Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,506,571 |
G→A |
54.5% |
G256G (GGC→GGT) |
yfbS ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,506,571 | 0 | G | A | 54.5%
| 12.4
/ 83.0
| 99 | G256G (GGC→GGT) | yfbS | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base G (29/16); new base A (43/11); total (72/27) |
| Fisher's exact test for biased strand distribution p-value = 1.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AACGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATCCGGGGCGAA > minE/1506514‑1506635
|
aaCGTTCACGATAACGCGACGAAACCGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1489817/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGGTGACGTTAGCGCCATAACGCTc > 1:417315/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATACCGCTc > 1:2186837/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2561837/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2082504/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1984645/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2186833/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2234645/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:667626/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1847352/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1833306/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1812344/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2479736/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1740732/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2532766/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:885560/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:2629179/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1490620/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1389183/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:587839/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:425160/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:1306921/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:3100386/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:900909/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:3251158/1‑69 (MQ=255)
aaCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTc > 1:101581/1‑69 (MQ=255)
aCGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGCTAGCGCCAt < 1:1783241/61‑1 (MQ=255)
tCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTa < 1:1106277/69‑1 (MQ=255)
tAACGCGACGAAAACGCC‑CCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTgag < 1:2536807/69‑1 (MQ=255)
aaCGCGACGAAATCGCCGCCAGCGTTCAACACCGTTGACGTTAGCGCCATAACGCTCACGTAATTTgag < 1:1167207/69‑1 (MQ=255)
aaCGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTgag < 1:218324/69‑1 (MQ=255)
aCGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTgag < 1:1360836/68‑1 (MQ=255)
aGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:1562906/69‑1 (MQ=255)
aGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:3325288/69‑1 (MQ=255)
aGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:1944691/69‑1 (MQ=255)
aGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:2450911/69‑1 (MQ=255)
aGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:2846184/69‑1 (MQ=255)
aGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:1353016/69‑1 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACTTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:2404824/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTgaga > 1:1975993/1‑49 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTg > 1:94951/1‑63 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGCCCAAt > 1:1492457/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCaa > 1:1265655/1‑68 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:3059620/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:2589399/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:3018104/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:895347/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:891384/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:3224354/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:411442/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:345296/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:3355321/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:3429928/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:818378/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:814195/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:770109/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:1996005/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:757971/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:1902827/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:22446/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:687173/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:2546606/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:2403023/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:624061/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:246128/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:1664365/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:201513/1‑69 (MQ=255)
gCGTTCAACACCGATGACGTTAGCACCATAACGCTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:2421059/1‑69 (MQ=255)
gCGTTCAACACAGATGACGTTAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAAt > 1:1746644/1‑69 (MQ=255)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:51494/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:757350/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:578591/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:1084989/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:3325019/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:1564483/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:1899741/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:2272811/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:2387348/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:2701024/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:2984966/1‑38 (MQ=38)
tCAACACCGATGACGTTAGCACCATAACGTTCACGTaa > 1:327901/1‑38 (MQ=38)
acCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGa < 1:134659/69‑1 (MQ=255)
gATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATcc < 1:1590121/69‑1 (MQ=255)
aTGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATcc < 1:626901/68‑1 (MQ=255)
gACGTTTGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATCCgg > 1:441444/1‑68 (MQ=255)
gACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCaa < 1:1243018/53‑1 (MQ=255)
gACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATCCggg > 1:597353/1‑69 (MQ=255)
gACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATCCggg > 1:2054223/1‑69 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:2084769/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:959691/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:1138439/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:3380156/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:2052085/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:2928920/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:3046915/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:236819/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:2425349/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:2924991/69‑1 (MQ=255)
tAGCACCATAACGTTCACGTAATTTGAGATCGTCCAGTCGTTGACCAATCATTGGCGATCCGGGGCGaa < 1:526215/69‑1 (MQ=255)
|
AACGTTCACGATAACGCGACGAAAACGCCGCCAGCGTTCAACACCGATGACGTTAGCGCCATAACGCTCACGTAATTTGAGATCATCCAGCCGTTGACCAATCATTGGCGATCCGGGGCGAA > minE/1506514‑1506635
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
