Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,573,449 |
A→T |
53.3% |
T94T (ACT→ACA) |
gltX ← |
glutamyl‑tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,573,449 | 0 | A | T | 53.3%
| 6.4
/ 68.9
| 60 | T94T (ACT→ACA) | gltX | glutamyl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base A (11/17); new base T (12/20); total (23/37) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
TTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGGTAGTACG > minE/1573387‑1573516
|
ttCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGccc > 1:2176627/1‑69 (MQ=255)
ttCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGccc > 1:3338483/1‑69 (MQ=255)
ttCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGccc < 1:3189730/69‑1 (MQ=255)
ttCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGccc < 1:3017674/69‑1 (MQ=255)
ttCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGccc < 1:2368495/69‑1 (MQ=255)
ttCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGcc > 1:794498/1‑68 (MQ=255)
tGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGc > 1:2423972/1‑69 (MQ=255)
tGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGc > 1:1989247/1‑69 (MQ=255)
ttCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTg > 1:3388404/1‑69 (MQ=255)
cgcgCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGccc < 1:2916442/53‑1 (MQ=255)
cgcgCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTga > 1:2924493/1‑68 (MQ=255)
cgcgCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGACCTCTTCCAGCATCTga > 1:1947463/1‑68 (MQ=255)
ttCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACcgc < 1:87098/69‑1 (MQ=255)
ttCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACcgc < 1:1702803/69‑1 (MQ=255)
ttCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACcgc < 1:2446819/69‑1 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAg > 1:2917352/1‑68 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:2395971/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:251745/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:221319/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:3313515/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:600124/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:745027/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:1693374/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:749961/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:1623322/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:1581296/1‑69 (MQ=255)
gcTCTTTAGAGCAATAGCATTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGc > 1:1493552/1‑69 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:3199270/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:3266097/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:99293/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:426777/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:3169925/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:675765/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:797642/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2855880/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2731/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2581605/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:1522818/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:1669136/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:1853576/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2068180/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2138542/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:216566/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2242387/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2263173/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:242082/68‑1 (MQ=255)
aTTTATAAGCTGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTc < 1:2670440/68‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCTATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:117812/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:2167098/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:207584/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:1966731/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:1914519/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:1416007/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:853216/69‑1 (MQ=255)
ttATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTgg < 1:1192860/69‑1 (MQ=255)
tataAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGgt > 1:2263609/1‑69 (MQ=255)
tataAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGgt > 1:2150918/1‑69 (MQ=255)
tataAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGgt > 1:2920457/1‑69 (MQ=255)
cAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGGTAGTACg < 1:2499345/69‑1 (MQ=255)
cAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGGTAGTACg < 1:2568650/69‑1 (MQ=255)
|
TTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGTTTGGTCTGGTAGTACG > minE/1573387‑1573516
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
