Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,614,829 |
G→C |
54.0% |
R317R (CGC→CGG) |
eutG ← |
predicted alcohol dehydrogenase in ethanolamine utilization |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,614,829 | 0 | G | C | 54.0%
| 9.4
/ 71.7
| 63 | R317R (CGC→CGG) | eutG | predicted alcohol dehydrogenase in ethanolamine utilization |
| Reads supporting (aligned to +/- strand): ref base G (12/17); new base C (13/21); total (25/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCGTTAATAGCGTCACGATCGTCGGATTTTTTAGTTCGCAGTGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACA > minE/1614766‑1614878
|
cgcgTTAATAGCGTCACGATCGTCGGATTTTTTAGTTCGCAGTGCCCGACCAATCTGACTAAAGCGtt < 1:2402344/68‑1 (MQ=255)
cgcgTTAATAGCGTCACGATCGTCGGATTTTTTAGTTCGCAGTGCCCGACCAATCTGACTAAAGCGtt < 1:1957400/68‑1 (MQ=255)
cgcgTTAATAGCGTCACGATCGTCGGATTTTTTAGTTCGCAGTGCCCGACCAATCTGACTAAAGCGtt < 1:1573386/68‑1 (MQ=255)
cgcgTTAATAGCGTCACGATCGTCGGATTTTTTAGTTCGCAGTGCCCGACCAATCTGACTAAAGCGtt < 1:3216040/68‑1 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:2291892/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:2499816/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:2130547/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:2630033/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:3062612/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:307836/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:1549951/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:1477823/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:3284152/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:788178/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:1264599/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:832287/1‑69 (MQ=255)
cACGATCGTCGGATTTTTTAGTTCGCAGCGCCCGACCAATCTGACTAAACCGATCACGACAAACCATcc > 1:996341/1‑69 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTa > 1:1070808/1‑46 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATGACCGTTGGCAGCaa < 1:1569114/69‑1 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa > 1:3278712/1‑69 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa < 1:311930/69‑1 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa < 1:3337290/69‑1 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa > 1:2828117/1‑69 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa > 1:2739105/1‑69 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa > 1:928152/1‑69 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa < 1:2623201/69‑1 (MQ=255)
tGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCaa > 1:1614215/1‑69 (MQ=255)
tGCCCGA‑CAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAAc > 1:2997834/1‑69 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:2747598/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:2214978/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:1607465/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:305878/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:2840055/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:480666/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:1439596/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:1205614/65‑1 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACa > 1:555080/1‑69 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACa > 1:1556207/1‑69 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACa > 1:3306212/1‑69 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACa > 1:3073772/1‑69 (MQ=255)
cccGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACa > 1:397220/1‑69 (MQ=255)
cccaCCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGgcagc < 1:1649632/61‑1 (MQ=255)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:3299799/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:1339114/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:1586328/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:524678/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:128789/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:1210828/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:917660/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:1109031/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:3292330/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:3286119/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:1517011/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:31785/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:3116640/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:1647013/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:266981/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:2006790/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:2166080/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:2175269/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:2493490/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTcc < 1:2441626/47‑1 (MQ=39)
gACCAATCTGACTAAACCGATCACGACAAACCATCCGGTTAAATTca < 1:2182437/47‑2 (MQ=38)
|
CGCGTTAATAGCGTCACGATCGTCGGATTTTTTAGTTCGCAGTGCCCGACCAATCTGACTAAAGCGTTCACGACAAACCATCCGGTTAAATTCCATCACCGTTGGCAGCAACA > minE/1614766‑1614878
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
