Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,664,043 |
C→T |
64.5% |
L393L (CTG→CTA) |
guaA ← |
GMP synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,664,043 | 0 | C | T | 64.5%
| 46.4
/ 44.7
| 76 | L393L (CTG→CTA) | guaA | GMP synthetase |
| Reads supporting (aligned to +/- strand): ref base C (16/11); new base T (11/38); total (27/49) |
| Fisher's exact test for biased strand distribution p-value = 2.35e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
CCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTC > minE/1663982‑1664094
|
ccAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGccc < 1:1215090/68‑1 (MQ=255)
ccAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGccc < 1:446647/68‑1 (MQ=255)
ccAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGccc < 1:2466639/68‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1090982/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:3085974/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:3081904/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:3185094/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:2920766/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:243841/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:2276346/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:2188998/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:2139310/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1673375/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1513509/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1504727/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:14793/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1367041/69‑1 (MQ=255)
aaCACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1431082/69‑1 (MQ=255)
acacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1630358/68‑1 (MQ=255)
gacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:2709860/2‑69 (MQ=255)
cacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:2337563/1‑69 (MQ=255)
cacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:1885355/1‑69 (MQ=255)
cacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:2639289/1‑69 (MQ=255)
cacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:431136/1‑69 (MQ=255)
cacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:2819081/1‑69 (MQ=255)
cacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCa > 1:2846999/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGaa > 1:1235681/1‑67 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGGcc > 1:3122633/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:2459164/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:283012/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:3017798/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:3208853/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:1917976/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:3184735/1‑69 (MQ=255)
aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAcc > 1:179438/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:1254743/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:1286442/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:626340/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:3160164/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:2426778/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:1309051/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:1638860/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:18754/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:814228/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:203428/1‑69 (MQ=255)
cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTCCAGACCaa > 1:806339/1‑69 (MQ=255)
ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGccc < 1:2997472/41‑1 (MQ=255)
ggAACGGGTGACGGTACAACATGTCATACGGTAGGCCCAGCTc < 1:1613144/43‑1 (MQ=255)
gTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAg < 1:1201965/69‑1 (MQ=255)
gTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAg < 1:3083738/69‑1 (MQ=255)
tGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAg < 1:823626/68‑1 (MQ=255)
tGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGc < 1:1926311/69‑1 (MQ=255)
tGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGc < 1:1924579/69‑1 (MQ=255)
tGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGc < 1:18336/69‑1 (MQ=255)
tGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGc < 1:2289271/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:429232/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:3392861/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:882541/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:74780/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:995702/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:744288/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:3111593/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:3055034/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:3052728/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2979555/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2798081/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2698047/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2543452/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2539140/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2337841/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2277340/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:2116762/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:1963477/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:1423014/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:1379565/69‑1 (MQ=255)
tACAACATGTCATACGGTAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTc < 1:1093061/69‑1 (MQ=255)
|
CCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCTTTC > minE/1663982‑1664094
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
