Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,886,458 |
A→G |
33.3% |
T640T (ACA→ACG) |
barA → |
hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,886,458 | 0 | A | G | 33.3%
| 73.1
/ 52.3
| 96 | T640T (ACA→ACG) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| Reads supporting (aligned to +/- strand): ref base A (30/34); new base G (10/22); total (40/56) |
| Fisher's exact test for biased strand distribution p-value = 1.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAACCGAT > minE/1886393‑1886524
|
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:2867342/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:3164234/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:1950162/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:3214731/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:1635109/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:1385188/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:3317120/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:460596/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:2277450/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:2448624/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:1175396/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:752975/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:678896/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:2356675/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGc > 1:723286/1‑69 (MQ=255)
gTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGATGAAACCATTAACACCTACACGc > 1:209191/1‑69 (MQ=255)
tCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGcc < 1:2382651/69‑1 (MQ=255)
gCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtg < 1:2239520/69‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:3333412/67‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:2891397/67‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:420822/67‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:279035/67‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:1099806/67‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:1213841/67‑1 (MQ=255)
aaaCTCAAGCAAGATGGTATCGGCGCGTGTCCGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:2095530/67‑1 (MQ=255)
ggTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:2967943/69‑1 (MQ=255)
ggTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:1903604/69‑1 (MQ=255)
ggTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:3144744/69‑1 (MQ=255)
ggTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:1016376/69‑1 (MQ=255)
ggTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:1986022/69‑1 (MQ=255)
ggTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:3249181/69‑1 (MQ=255)
gTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTtgcctg < 1:1239609/51‑1 (MQ=255)
gTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:3312959/68‑1 (MQ=255)
gTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:1386143/68‑1 (MQ=255)
aTCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:3096685/69‑1 (MQ=255)
aTCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:3124107/69‑1 (MQ=255)
aTCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:1075248/69‑1 (MQ=255)
aTCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:775360/69‑1 (MQ=255)
aTCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:867339/69‑1 (MQ=255)
aTCGGCGCGTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:239624/69‑1 (MQ=255)
gcgTGTCTGCTGAAACCATTAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGtcat < 1:1958330/63‑1 (MQ=255)
ctgctgAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGt < 1:37205/54‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:2538935/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:2947058/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:317822/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:3176316/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt > 1:2416872/1‑69 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt > 1:1581125/1‑69 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt > 1:161824/1‑69 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:2008658/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:1187058/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:2212349/69‑1 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt > 1:2258933/1‑69 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt > 1:10171/1‑69 (MQ=255)
gAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCt < 1:1045466/69‑1 (MQ=255)
ccATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTg < 1:2551079/69‑1 (MQ=255)
ccATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTg < 1:1982318/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:1240590/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:337763/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:352694/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:3284754/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:1280492/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:2531791/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:1895612/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:10044/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:602692/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:922288/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:1065199/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:2863490/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:745618/69‑1 (MQ=255)
ttAACACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTATTGCCt < 1:440434/69‑1 (MQ=255)
ttAAAACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTGTCATCACAAACAAAACACGCTTTTGCCt < 1:689859/69‑1 (MQ=255)
aaCACGTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:2898071/1‑39 (MQ=37)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:512951/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:997750/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:357094/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:1360380/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:3280675/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:2561926/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:2016002/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:266751/1‑39 (MQ=38)
aaCACCTACGCGCCTGTTGCCTGCCCTGACAGAATTTTg > 1:202002/1‑39 (MQ=38)
acacCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTg < 1:1061388/63‑1 (MQ=255)
ccTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAAcc < 1:1955496/69‑1 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:2181997/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:884061/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:826598/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:2229162/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:722600/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:133643/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:3140972/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:1299557/1‑50 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTa < 1:660037/64‑1 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTa < 1:483617/64‑1 (MQ=255)
tACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTa < 1:2552570/64‑1 (MQ=255)
tACACGACTGTTGCCTGCCCTGACGGAATTTTGTCATCACaaacaaaaca > 1:439474/1‑50 (MQ=255)
cacGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAACCGAt > 1:2209107/1‑68 (MQ=255)
cacGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAACCGAt > 1:2383965/1‑68 (MQ=255)
cacGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAACCGAt > 1:2488722/1‑68 (MQ=255)
|
GTCAATGCTGAAAAACTCAAGCAAGATGGTATCGGCGCGTGTCTGCTGAAACCATTAACACCTACACGCCTGTTGCCTGCCCTGACGGAATTTTGTCATCACAAACAAAACACGCTTTTGCCTGTAACCGAT > minE/1886393‑1886524
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
