Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,969,046 |
C→A |
52.4% |
T47N (ACC→AAC) ‡ |
yggG → |
predicted peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,969,046 | 0 | C | A | 52.4%
| ‑4.3
/ 100.5
| 82 | T47N (ACC→AAC) ‡ | yggG | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base C (25/14); new base A (24/19); total (49/33) |
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCG > minE/1968988‑1969108
|
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:2384250/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:3163300/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:3124636/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:2860894/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:2474302/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:448233/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:733338/1‑60 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAcc > 1:147595/1‑60 (MQ=255)
ctcATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGAt < 1:3191133/67‑1 (MQ=255)
ctcATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGAt < 1:1732432/67‑1 (MQ=255)
caGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCa < 1:41883/68‑1 (MQ=255)
caGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCa < 1:417275/68‑1 (MQ=255)
caGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCa < 1:2094042/68‑1 (MQ=255)
caGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCa < 1:534440/68‑1 (MQ=255)
aGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGgaga > 1:821692/1‑68 (MQ=255)
aGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGgaga > 1:2770788/1‑68 (MQ=255)
gCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCg > 1:2090877/1‑49 (MQ=255)
gCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCg > 1:846724/1‑49 (MQ=255)
gCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCg > 1:3082810/1‑49 (MQ=255)
ttttCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATg > 1:2358568/1‑67 (MQ=255)
tttCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATgcc < 1:2844454/58‑3 (MQ=38)
tttCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATgcc < 1:2406913/58‑3 (MQ=38)
tttCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATgcc < 1:588951/58‑3 (MQ=38)
tttCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATgcc < 1:2171939/58‑3 (MQ=38)
tttCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATgcc < 1:591392/58‑3 (MQ=38)
aGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcgac < 1:1968658/68‑1 (MQ=255)
aGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcgac < 1:1435413/68‑1 (MQ=255)
aGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcgac < 1:1990900/68‑1 (MQ=255)
tGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGga < 1:3237328/46‑1 (MQ=255)
tGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGga < 1:1240331/46‑1 (MQ=255)
tGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGga < 1:781799/46‑1 (MQ=255)
tGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGga < 1:2489271/46‑1 (MQ=255)
gAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGga < 1:862186/45‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:2991797/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:3385010/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:29211/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:2897352/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:2850079/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:1104304/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:3392692/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:2718744/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:450899/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:1906844/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:1888614/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:1815304/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:2131257/64‑1 (MQ=255)
tGATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGAtt < 1:1823782/64‑1 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:1045587/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:266202/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:2003705/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:3141251/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:955619/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:594836/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:216827/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:944942/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:578339/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:542250/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:1366852/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:2597019/1‑69 (MQ=255)
gATGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:501843/1‑69 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:109581/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:3205535/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:83824/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:3147771/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:305351/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:1490780/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:1590745/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:2153467/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:267305/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:2670166/1‑68 (MQ=255)
aTGCGCAGGTGAAAAAACTGAGCGATCAGGCATGCCAGGAGATGGACAGCAAAGCGACGATTGCgcca > 1:2627907/1‑68 (MQ=255)
cgcAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc > 1:2410956/1‑68 (MQ=255)
cgcAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc > 1:1372812/1‑68 (MQ=255)
cgcAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc > 1:1828444/1‑68 (MQ=255)
cgcAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc > 1:3185222/1‑68 (MQ=255)
cgcAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc > 1:2978034/1‑68 (MQ=255)
cgcAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgcca > 1:2272316/1‑65 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcca > 1:2402918/1‑63 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAg > 1:1267775/1‑67 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGc > 1:1343955/1‑68 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:2458978/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:2632556/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:1868184/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:3393068/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:1620233/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:2784999/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:1535811/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:850942/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCg > 1:3312044/1‑69 (MQ=255)
tGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATAGCGCCAGCCAATAg > 1:2695544/1‑67 (MQ=255)
|
CTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCG > minE/1968988‑1969108
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
