Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,156,629 |
G→A |
71.1% |
G73G (GGC→GGT) |
obgE ← |
GTPase involved in cell partioning and DNA repair |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,156,629 | 0 | G | A | 71.1%
| 73.0
/ 32.5
| 76 | G73G (GGC→GGT) | obgE | GTPase involved in cell partioning and DNA repair |
| Reads supporting (aligned to +/- strand): ref base G (4/18); new base A (10/44); total (14/62) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGCACTTTAATCGTCACGTCTTTACCGCGCTTACCGGTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGATAAGCGTG > minE/2156576‑2156686
|
ggCACTTTAATCGTCACGTCTTTACCGCGCTTACCGGTACAGTCGCGGCTTGCGCCATTCTGACcgcg < 1:462197/68‑1 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:2566396/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:3376024/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:2378122/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:1876314/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:3195900/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:681309/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:2933592/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:834479/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:1325927/1‑69 (MQ=255)
aCGTCTTTACCGCGCTTACCGGTACAGTCTAGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGAt > 1:2150443/1‑69 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCTCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:468834/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:287199/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:2841064/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:3066834/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:3285618/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:2956248/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:3304085/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:2408350/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:2386232/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:299117/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:3363124/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:3123098/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:3413873/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:2171045/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:872315/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:2062348/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:453127/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:857380/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:531082/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:85667/69‑1 (MQ=255)
cgcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGa < 1:1716074/69‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGAGCGCGCTCTGCACGGa < 1:529021/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:907398/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:807703/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:766222/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:3136117/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:635810/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:3242669/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:576003/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:3346998/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:418049/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:3430808/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2995929/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:1175521/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2004016/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2051852/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2118457/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2362669/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2468055/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2468964/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:2679223/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTACACGGa < 1:1640716/51‑1 (MQ=255)
gcTTACCGGTACAGTCTCGGCTTGCACAGTTCTGACCGCGCTCTGCACGGa < 1:777451/51‑1 (MQ=255)
cTTACCGGTACAGTCTCGGCTTGCACCGTTCTGACCGCGCTCTGCACGGa < 1:1572463/50‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:3337216/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:168127/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:1788567/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:1797808/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:1801780/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:1881706/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:2766193/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:2050122/68‑1 (MQ=255)
ggTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:353625/68‑1 (MQ=255)
tACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGa < 1:2370680/66‑1 (MQ=255)
cAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:1836803/55‑1 (MQ=255)
cAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:669564/55‑1 (MQ=255)
cAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:2140309/55‑1 (MQ=255)
cAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:2160614/55‑1 (MQ=255)
cAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:2433504/55‑1 (MQ=255)
cAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:3120594/55‑1 (MQ=255)
aGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAAc < 1:1368742/54‑1 (MQ=255)
gcgGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGATAAGCgtg > 1:2713830/1‑67 (MQ=255)
gcgGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGATAAGCgtg > 1:411519/1‑67 (MQ=255)
gcgGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGATAAGCgtg > 1:1210869/1‑67 (MQ=255)
gcgGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGATAAGCgtg > 1:117145/1‑67 (MQ=255)
|
GGCACTTTAATCGTCACGTCTTTACCGCGCTTACCGGTACAGTCGCGGCTTGCGCCATTCTGACCGCGCTCTGCACGGAAAGATTTTTCAAAACGATAATCGATAAGCGTG > minE/2156576‑2156686
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
