Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,284,437 |
G→A |
50.0% |
A367A (GCC→GCT) |
argH ← |
argininosuccinate lyase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,284,437 | 0 | G | A | 50.0%
| ‑4.3
/ 61.4
| 68 | A367A (GCC→GCT) | argH | argininosuccinate lyase |
| Reads supporting (aligned to +/- strand): ref base G (6/28); new base A (13/21); total (19/49) |
| Fisher's exact test for biased strand distribution p-value = 1.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCAACAATATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTGAATGCC > minE/2284372‑2284496
|
ccAACAATATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggc < 1:1835767/68‑1 (MQ=255)
ccAACAATATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggc < 1:153779/68‑1 (MQ=255)
ccAACAATATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggc < 1:831208/68‑1 (MQ=255)
ccAACAATATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggc < 1:555585/68‑1 (MQ=255)
aacaaTATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggcgtt < 1:2087134/69‑1 (MQ=255)
aacaaTATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggcgtt < 1:1845686/69‑1 (MQ=255)
aacaaTATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggcgtt < 1:739970/69‑1 (MQ=255)
aacaaTATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggcgtt < 1:1108832/69‑1 (MQ=255)
acaaTATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggcgtt < 1:829380/68‑1 (MQ=255)
acaaTATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGtggc < 1:2419452/65‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCTCCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:1095723/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:2146481/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:2323765/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:732713/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:2530461/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:635815/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:1640982/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:519858/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:2594347/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:802705/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:1467721/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:494677/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:3049074/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:913335/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:386437/68‑1 (MQ=255)
gcgcCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAAccc < 1:3304457/68‑1 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:3357985/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:2685519/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:2092886/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:3341926/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:1967606/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:1925731/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:921012/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:1802613/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgc > 1:2026436/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgc > 1:371832/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgc > 1:2474568/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgc > 1:3091339/1‑67 (MQ=255)
cgcgGAACGGTACGCCTTTCGCCACAAGATAATCCGCCAGTTCAGTAGCGTTGGCGTAACCctgctgcg > 1:1382473/1‑67 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCctg > 1:1106065/1‑61 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:279036/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:330337/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:3235632/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:1421024/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:1566820/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:2401652/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:60557/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGc < 1:2159411/67‑1 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCg > 1:1881631/1‑69 (MQ=255)
ggAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCg > 1:1885438/1‑69 (MQ=255)
ccTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCaa < 1:2824732/69‑1 (MQ=255)
ccTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCaa < 1:508610/69‑1 (MQ=255)
ccTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCaa < 1:1727011/69‑1 (MQ=255)
ccTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCaa > 1:458066/1‑69 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:674541/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:1022429/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:968564/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:3261859/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:1051026/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:116901/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:1285351/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:2215210/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:2565270/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:2891844/67‑1 (MQ=255)
gCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:3411299/67‑1 (MQ=255)
aGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTc > 1:1518541/1‑69 (MQ=255)
aGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTc > 1:912243/1‑69 (MQ=255)
aTCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTg < 1:2063656/69‑1 (MQ=255)
aTCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTg < 1:2034143/69‑1 (MQ=255)
aTCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTg < 1:1393491/69‑1 (MQ=255)
aTCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTg < 1:3165543/69‑1 (MQ=255)
aTCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTg < 1:846079/69‑1 (MQ=255)
cAGTTCAGTAGCGTTGGCGTAACCCTGCTGCGCCGCTTCCTGGCAACGCGGACGTTTCACCTGAATGcc < 1:225554/69‑1 (MQ=255)
cAGTTCAGTAGCGTTGGCGTAACCCTGCTGCGCCGCTTCCTGGCAACGCGGACGTTTCACCTGAATGcc < 1:3036713/69‑1 (MQ=255)
cAGTTCAGTAGCGTTGGCGTAACCCTGCTGCGCCGCTTCCTGGCAACGCGGACGTTTCACCTGAATGcc < 1:1892476/69‑1 (MQ=255)
cAGTTCAGTAGCGTTGGCGTAACCCTGCTGCGCCGCTTCCTGGCAACGCGGACGTTTCACCTGAATGcc < 1:18671/69‑1 (MQ=255)
cAGTTCAGTAGCGTTGGCGTAACCCTGCTGCGCCGCTTCCTGGCAACGCGGACGTTTCACCTGAATGcc < 1:3248874/69‑1 (MQ=255)
ttCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTg < 1:12371/47‑1 (MQ=255)
|
CCAACAATATGGTGCGCCTCGCGGAACGGTACGCCTTTCGCCACCAGATAATCCGCCAGTTCGGTGGCGTTGGCGTAACCCTGCTGAGCCGCTTCCTGGCAACGTGGACGTTTCACCTGAATGCC > minE/2284372‑2284496
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
