Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,323,988 |
A→G |
42.8% |
G122G (GGT→GGC) |
pfkA ← |
6‑phosphofructokinase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,323,988 | 0 | A | G | 42.8%
| 38.6
/ 111.0
| 140 | G122G (GGT→GGC) | pfkA | 6‑phosphofructokinase I |
| Reads supporting (aligned to +/- strand): ref base A (15/65); new base G (9/51); total (24/116) |
| Fisher's exact test for biased strand distribution p-value = 6.53e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 |
Only 100 of 140 total aligned reads displayed.
CGCAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGAACCGTC > minE/2323925‑2324044
|
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1830529/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1526523/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1627848/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:2680867/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:2620358/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:356830/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1758871/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1774343/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1197555/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:3431107/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1887719/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:2492382/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:2965222/69‑1 (MQ=255)
cgcAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:225602/69‑1 (MQ=255)
aCCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGcc < 1:1232839/69‑1 (MQ=255)
aCCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGcc < 1:1969669/69‑1 (MQ=255)
aCCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGcc < 1:1442287/69‑1 (MQ=255)
aCCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGcc < 1:1492874/69‑1 (MQ=255)
aCCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGcc < 1:1036516/69‑1 (MQ=255)
aCCGATAGTGTAGTCAGTCCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGcc < 1:2600713/69‑1 (MQ=255)
ccGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGGCCGAt < 1:1679263/56‑1 (MQ=255)
gTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCa < 1:2737151/68‑1 (MQ=255)
gTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCa < 1:455944/68‑1 (MQ=255)
gTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCa < 1:1948146/68‑1 (MQ=255)
gTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAg > 1:863715/1‑69 (MQ=255)
cAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGa < 1:2065172/68‑1 (MQ=255)
cAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGa < 1:1391987/68‑1 (MQ=255)
cAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGa < 1:1378567/68‑1 (MQ=255)
cAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGa < 1:1149629/68‑1 (MQ=255)
cAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGa < 1:1048312/68‑1 (MQ=255)
cAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGa < 1:3104375/68‑1 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGt > 1:1271729/1‑63 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGt > 1:2022765/1‑63 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACg < 1:214949/69‑1 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACg < 1:2052233/69‑1 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACg < 1:2983608/69‑1 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACg < 1:783791/69‑1 (MQ=255)
aGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACg < 1:2646296/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGTAAGcc < 1:2797048/52‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGc < 1:3329063/68‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGc < 1:2509577/68‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGc < 1:2330758/68‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:2566018/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:174382/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:369072/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:457259/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:492319/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:894999/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCa < 1:906295/69‑1 (MQ=255)
tGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCAATTTCGGTCAGACGc < 1:1021370/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2805684/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2958014/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:696612/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:1021697/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2153687/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2585933/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:1481015/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2032772/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2097454/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2272391/68‑1 (MQ=255)
tttGATGTCGTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTg < 1:2477968/68‑1 (MQ=255)
tGTCGTTGGCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCAgcc < 1:15261/68‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCTATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCa > 1:491103/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGaa > 1:3122742/1‑38 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGCCGCATTGCACCCa > 1:678000/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCa > 1:1086626/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCa > 1:906299/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCa > 1:549846/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCa > 1:3261724/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCa > 1:2536878/1‑67 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:1159536/69‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:805878/69‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:702928/69‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:1629942/69‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:956716/69‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:19338/69‑1 (MQ=255)
tCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATg < 1:1970027/69‑1 (MQ=255)
gTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGaa > 1:663968/1‑36 (MQ=255)
gTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGt > 1:1652146/1‑68 (MQ=255)
gTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGt > 1:2859481/1‑68 (MQ=255)
gTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGt > 1:2245098/1‑68 (MQ=255)
gTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGt > 1:2978205/1‑68 (MQ=255)
gTTGTCGATAGTGCCCGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGt > 1:3306394/1‑68 (MQ=255)
gTTGTCGATAGTGCACGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGt > 1:318941/1‑68 (MQ=255)
aGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGAACCGTc > 1:1432796/1‑69 (MQ=255)
aGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGAACCGTc > 1:2177008/1‑69 (MQ=255)
aGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGAACCGTc > 1:747737/1‑69 (MQ=255)
cccGGCAGGCCTATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:1048199/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCTCCCATGTAGGaa < 1:3345674/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:2395814/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:229515/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:1856244/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:959288/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:1373939/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:745018/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:2946056/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:689388/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:597672/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:561601/60‑1 (MQ=255)
cccGGCAGGCCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGaa < 1:1611773/60‑1 (MQ=255)
|
CGCAGTGAAGAAACCGATAGTGTAGTCAGTGCCTTTGATGTCGTTGTCGATAGTGCCCGGCAGACCGATGCACGGGAAGCCCATTTCGGTCAGACGCATTGCACCCATGTAGGAACCGTC > minE/2323925‑2324044
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
