Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,366,910 |
G→A |
51.5% |
H181H (CAC→CAT) |
pepQ ← |
proline dipeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,366,910 | 0 | G | A | 51.5%
| ‑1.8
/ 88.9
| 97 | H181H (CAC→CAT) | pepQ | proline dipeptidase |
| Reads supporting (aligned to +/- strand): ref base G (19/28); new base A (27/23); total (46/51) |
| Fisher's exact test for biased strand distribution p-value = 2.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGTCAGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCAGTTTTGAAGG > minE/2366844‑2366974
|
ggTCAGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTg < 1:1623736/69‑1 (MQ=255)
ggTCAGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTg < 1:3427145/69‑1 (MQ=255)
aGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCg < 1:1765794/69‑1 (MQ=255)
aGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCg < 1:2064063/69‑1 (MQ=255)
aGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCg < 1:815420/69‑1 (MQ=255)
aTAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGtt < 1:2869942/69‑1 (MQ=255)
aTAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGtt < 1:130054/69‑1 (MQ=255)
aTAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGtt < 1:2027909/69‑1 (MQ=255)
aTAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGtt < 1:2419413/69‑1 (MQ=255)
aTAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGGGACCGtt < 1:1631549/69‑1 (MQ=255)
tAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGtt < 1:2563640/68‑1 (MQ=255)
tGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCa < 1:672633/69‑1 (MQ=255)
tGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCa < 1:448723/69‑1 (MQ=255)
gTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCa > 1:1179259/1‑68 (MQ=255)
gTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCa > 1:1524312/1‑68 (MQ=255)
gTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAt < 1:2428815/69‑1 (MQ=255)
ttGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtt > 1:2930871/1‑69 (MQ=255)
ttGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtt > 1:2805443/1‑69 (MQ=255)
ttGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtt > 1:2285818/1‑69 (MQ=255)
ttGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtt > 1:291966/1‑69 (MQ=255)
ttGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtt > 1:2694739/1‑69 (MQ=255)
ttGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtt > 1:92114/1‑69 (MQ=255)
ttGATATCG‑ACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAttt > 1:667608/1‑69 (MQ=255)
gATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCAtttt > 1:1519941/1‑69 (MQ=255)
gAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTgcgc > 1:722079/1‑69 (MQ=255)
tCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCa < 1:2532268/69‑1 (MQ=255)
tCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCa < 1:1690436/69‑1 (MQ=255)
tCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCa < 1:2213421/69‑1 (MQ=255)
tCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCa < 1:129868/69‑1 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCt > 1:2020809/1‑57 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:3087618/1‑69 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:1572289/1‑69 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:2188650/1‑69 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:3271252/1‑69 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:1135637/1‑69 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:3335491/1‑69 (MQ=255)
ccAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAg > 1:3399418/1‑69 (MQ=255)
gaacggaacgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGcc < 1:2148899/69‑1 (MQ=255)
gaacggaacgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGcc < 1:455731/69‑1 (MQ=255)
gaacggaacgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGcc < 1:1133416/69‑1 (MQ=255)
gaacggaacgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGcc < 1:156617/69‑1 (MQ=255)
aacgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCg < 1:2713988/69‑1 (MQ=255)
aacgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCg < 1:1524208/69‑1 (MQ=255)
cgCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCa < 1:2562681/35‑1 (MQ=255)
tcttctGCCGGGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:3101744/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2887236/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:1112644/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:279989/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:956562/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:91848/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2845335/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:809845/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:759655/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:3077651/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2889802/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:473714/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:330012/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:3297549/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2948199/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:1056488/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:1923652/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2709107/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:198673/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:1664552/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2132236/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:1496493/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2286849/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2364270/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:2455845/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:248721/1‑68 (MQ=255)
tcttctGCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTcg > 1:1305082/1‑68 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:755124/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1310760/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:723905/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1328287/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1490656/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1285275/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:887139/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1171457/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1696124/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1937165/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:1851070/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2044591/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2180841/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:317471/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:3108996/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2309961/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2965090/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2403718/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2512767/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2552048/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2650775/68‑1 (MQ=255)
gCCGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2700930/68‑1 (MQ=255)
ccGCGCGATGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCGGtttt < 1:2587741/67‑1 (MQ=255)
cgcgGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCAGTTTTGAAgg < 1:774443/69‑1 (MQ=255)
cgcgGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCAGTTTTGAAgg < 1:1140852/69‑1 (MQ=255)
gcgGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCAGTTTTGAAgg < 1:3412115/68‑1 (MQ=255)
|
GGTCAGATAGGCAATGTTGATATCGAACTCGCTCATGCCAGAACGGAACGCTTCTTCTGCCGCGCGGTGACCGTTGACCGCCATTTTCTGCGCTTCACGCATACAGGCCAGTTCGTACTCAGTTTTGAAGG > minE/2366844‑2366974
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
