Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,396,732 |
A→G |
58.6% |
Y152Y (TAT→TAC) |
corA ← |
magnesium/nickel/cobalt transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,396,732 | 0 | A | G | 58.6%
| 33.7
/ 56.7
| 82 | Y152Y (TAT→TAC) | corA | magnesium/nickel/cobalt transporter |
| Reads supporting (aligned to +/- strand): ref base A (15/19); new base G (29/19); total (44/38) |
| Fisher's exact test for biased strand distribution p-value = 1.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCCTCGTCGTACTCATCGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCG > minE/2396666‑2396798
|
cgcCTCGTCGTACTCATCGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCtata < 1:3156722/69‑1 (MQ=255)
cgcCTCGTCGTACTCATCGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCtata < 1:1838559/69‑1 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2931996/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2929664/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2582398/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:3224385/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:334415/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:390435/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2094385/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2514215/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2505345/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:737141/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:754465/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:811367/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:2407193/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:3058610/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCGGCTCAACTGCTACAGGTCGCTGTAGata > 1:1081559/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACCCAGCTCAACTGCTCCAGGTCGCTGTAGata > 1:671670/1‑69 (MQ=255)
tcgtcgTACTCATCGCCCTGATGCCCTTCCATAATTACACGGCTCAACTGCTCCAGGTCGCTGTAGata > 1:500293/1‑69 (MQ=255)
aTCGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTc > 1:2553830/1‑69 (MQ=255)
cGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCa < 1:1722650/68‑1 (MQ=255)
cGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCa < 1:1592267/68‑1 (MQ=255)
cGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCa < 1:837447/68‑1 (MQ=255)
aTGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCaa > 1:986752/1‑69 (MQ=255)
aTGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCa > 1:369299/1‑68 (MQ=255)
gCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCaa < 1:2295926/67‑1 (MQ=255)
gCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCaa < 1:1559378/67‑1 (MQ=255)
gCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCaa < 1:564487/67‑1 (MQ=255)
cTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGt > 1:1089965/1‑68 (MQ=255)
cTTACATAATCACCCGGCTAAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTg > 1:445365/1‑67 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATc > 1:2564914/1‑57 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:3124588/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:3177351/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:2699624/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:708574/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:722376/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:2515749/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:1019320/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:1688257/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:1344265/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:163063/1‑69 (MQ=255)
ttCCATAATTACCCGGCTCAACTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACTGTTc > 1:1244628/1‑69 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTc < 1:2172299/41‑1 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTc < 1:1671076/41‑1 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTc < 1:2992693/41‑1 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTc < 1:1916684/41‑1 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCa < 1:2237127/48‑1 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTg > 1:768883/1‑69 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTg > 1:1365775/1‑69 (MQ=255)
aTCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTg > 1:2866103/1‑69 (MQ=255)
gCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCa < 1:3410839/40‑1 (MQ=255)
taCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:157784/45‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:3320862/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:3225860/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:3368898/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:3119334/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:1453782/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:2910468/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:2909890/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:13449/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:281052/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:2706658/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:2085263/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:2122296/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:1195589/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:1012127/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:762847/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCCAACt < 1:2281144/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATCTGCAAACt < 1:3020960/46‑1 (MQ=255)
aaCTGCTCCAGGTCGCTGTAGATATTTTCAATTTCATATGCCAACt < 1:1409183/46‑1 (MQ=39)
tGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATcc < 1:3298439/69‑1 (MQ=255)
tGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATcc < 1:1520204/69‑1 (MQ=255)
ggTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:1013580/68‑1 (MQ=255)
ggTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:215692/68‑1 (MQ=255)
ggTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:2499003/68‑1 (MQ=255)
ggTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCCAACAGATCCagcagc < 1:1640898/68‑1 (MQ=255)
gTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:1138325/67‑1 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:2709450/1‑69 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:1236200/1‑69 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:122176/1‑69 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:2483874/1‑69 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:82330/1‑69 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:972373/1‑69 (MQ=255)
cGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACt > 1:2359661/1‑69 (MQ=255)
tataGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:152247/68‑1 (MQ=255)
tataGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:2907124/68‑1 (MQ=255)
tataGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:2091040/68‑1 (MQ=255)
tataGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:1179002/68‑1 (MQ=255)
tataGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:2378532/68‑1 (MQ=255)
|
CGCCTCGTCGTACTCATCGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCG > minE/2396666‑2396798
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
