Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,400,903 |
G→A |
50.5% |
L176L (CTC→CTT) |
yigB ← |
predicted hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,400,903 | 0 | G | A | 50.5%
| ‑2.3
/ 91.4
| 97 | L176L (CTC→CTT) | yigB | predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (30/18); new base A (29/20); total (59/38) |
| Fisher's exact test for biased strand distribution p-value = 8.36e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 |
CCACGTCAGTGGTGAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAGCGCG > minE/2400848‑2400968
|
ccacGTCAGTGGTGAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCgaa > 1:1904206/1‑66 (MQ=255)
ccacGTCAGTGGTGAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCa > 1:303112/1‑68 (MQ=255)
ccacGTCAGTGGTGAGATCGT‑CCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAg > 1:2002894/1‑68 (MQ=255)
tCAGTGGTGAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCa > 1:1841065/1‑67 (MQ=255)
ggtgAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTa < 1:1974259/69‑1 (MQ=255)
ggtgAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTa < 1:2043056/69‑1 (MQ=255)
ggtgAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTa < 1:2592991/69‑1 (MQ=255)
ggtgAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTa < 1:3054535/69‑1 (MQ=255)
gagaTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACat < 1:401171/69‑1 (MQ=255)
gagaTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACat < 1:1146226/69‑1 (MQ=255)
gaTCGTCCCCTACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1409210/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1659416/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1797347/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1478213/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:191353/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1702160/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1409519/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:406804/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:691020/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:34510/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:3404758/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1284605/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:2100533/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:2147927/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1142637/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:3271970/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:2481475/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:1067277/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:2598814/60‑4 (MQ=255)
gaTCGTCCCCGACATGTAAGATCTCACCGATCGGCACGTTAAGTTTTTCCGCCGCCagta < 1:2982314/60‑4 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATc > 1:1956605/1‑69 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATc > 1:3184165/1‑69 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATc > 1:959562/1‑69 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATc > 1:952083/1‑69 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATc > 1:1370992/1‑69 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACACATc > 1:1379013/1‑69 (MQ=255)
aTCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTATCCGCAGCCAAAAAGTACATATc > 1:3316488/1‑69 (MQ=255)
aTCGACCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATc > 1:1274250/1‑69 (MQ=255)
cGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCg > 1:1350946/1‑68 (MQ=255)
cAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACg > 1:512223/1‑69 (MQ=255)
cAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACg > 1:2486762/1‑69 (MQ=255)
gTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:2484042/69‑1 (MQ=255)
tAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:1460458/68‑1 (MQ=255)
tAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:631514/68‑1 (MQ=255)
tAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:1883399/68‑1 (MQ=255)
tAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:2056456/68‑1 (MQ=255)
tAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:1061653/68‑1 (MQ=255)
tAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTg < 1:854722/68‑1 (MQ=255)
aGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAgc > 1:3022510/1‑69 (MQ=255)
aGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAgc > 1:1044282/1‑69 (MQ=255)
aTCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTgcgcgc > 1:3254618/1‑69 (MQ=255)
aTCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAgcgc > 1:2166222/1‑69 (MQ=255)
aTCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAgcgc > 1:800342/1‑69 (MQ=255)
aTCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAgcgc > 1:1122722/1‑69 (MQ=255)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:3236482/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:3272100/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:440926/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:734785/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:3301241/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:3229626/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:711580/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:3222384/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:707668/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:683000/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:571602/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1037626/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1989534/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1344377/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1210763/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1523768/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1537530/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1081351/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1692197/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1782095/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:186064/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1997158/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:2102633/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:2360175/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:2375132/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:2473070/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1015/3‑50 (MQ=25)
caccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:2992143/3‑50 (MQ=25)
aaccGATCGGCACGTTAAGTTTTTCCGCCGCCAGTAAGTACATGTCGCTg > 1:1075678/3‑50 (MQ=25)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCTCTGAACGGTATTGAg > 1:3386127/1‑55 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:96022/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:938017/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:1040414/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:1633524/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:499362/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:1989145/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCgg > 1:2684652/1‑66 (MQ=255)
cGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCACGTGCgg > 1:647950/1‑66 (MQ=255)
gTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAgcgcg < 1:1371458/69‑1 (MQ=255)
gTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAgcgcg < 1:1443310/69‑1 (MQ=255)
gTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAgcgcg < 1:1227816/69‑1 (MQ=255)
gTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAgcgcg < 1:2213096/69‑1 (MQ=255)
gTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAgcgcg < 1:3071822/69‑1 (MQ=255)
|
CCACGTCAGTGGTGAGATCGTCCCCAACATGTAAGATCTCGCCGATCGGCACGTTGAGTTTTTCCGCAGCCAAAAAGTACATATCGCTGAACGGTTTTGAGCGCCCGTGCGGGCCAGCGCG > minE/2400848‑2400968
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
