Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,522,289 |
C→G |
23.6% |
G104G (GGG→GGC) |
yicG ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,522,289 | 0 | C | G | 23.6%
| 116.0
/ 33.5
| 72 | G104G (GGG→GGC) | yicG | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (32/23); new base G (13/4); total (45/27) |
| Fisher's exact test for biased strand distribution p-value = 2.53e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 |
ACCGCCGCGACAACGGCAATAATTGGGCCGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAGG > minE/2522233‑2522354
|
aCCGCCGCGACAACGGCAATAATTGGGCCGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATa > 1:636723/1‑66 (MQ=255)
aCCGCCGCGACAACGGCAATAATTGGGCCGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAg > 1:3026965/1‑67 (MQ=255)
aCCGCCGCGACAACGGCAATAATTGGGCCGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAg > 1:1175152/1‑67 (MQ=255)
gccgcGACAACGGCAATAATTGGGCCGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGaaaa < 1:1343284/68‑1 (MQ=255)
gcgACAACGGCAATAATTGGGCCGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGacc < 1:2888607/69‑1 (MQ=255)
gcgACAACGGCAATAATTGGGCCGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGacc < 1:1973775/69‑1 (MQ=255)
gcgACAACGGCAATAATTGGGCCGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGacc < 1:882605/69‑1 (MQ=255)
gcgACAACGGCAATAATTGGGCCGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGacc < 1:1531079/69‑1 (MQ=255)
ccGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAg < 1:654687/68‑1 (MQ=255)
ccGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAg < 1:1224525/68‑1 (MQ=255)
ccGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAg < 1:448192/68‑1 (MQ=255)
ccGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc < 1:3359508/69‑1 (MQ=255)
ccGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc < 1:1733038/69‑1 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGaaaa > 1:2889432/1‑43 (MQ=38)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGCCCACCAGTCCGAGCGCATCGAGc > 1:2270878/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:1612999/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:1690697/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:736429/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:2446755/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:3098868/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:1198581/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:376349/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:2002678/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:209230/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:2896782/1‑68 (MQ=255)
cGTGTCCCATATCCAGTGCAACCTGTGCGCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGc > 1:2270547/1‑68 (MQ=255)
gTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCAc < 1:63577/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:2875539/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:1105191/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:2390937/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:1383332/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:2282203/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:926476/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:3200086/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:3279395/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:3291794/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:922542/69‑1 (MQ=255)
tatCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAaca < 1:591093/69‑1 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGac > 1:514465/1‑36 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTc > 1:502154/1‑44 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:681279/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:2409512/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:2405395/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:23946/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:235708/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:848975/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:464657/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:2000259/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:1915692/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:1879526/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:1861817/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:101450/1‑69 (MQ=255)
atCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:1322709/1‑69 (MQ=255)
tCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAacac > 1:2675763/1‑68 (MQ=255)
tCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACt > 1:618973/1‑69 (MQ=255)
tCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACt > 1:1728634/1‑69 (MQ=255)
tCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACt > 1:2951207/1‑69 (MQ=255)
cAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCa > 1:1432840/1‑69 (MQ=255)
cAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCa > 1:1305677/1‑69 (MQ=255)
cAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCa > 1:1735905/1‑69 (MQ=255)
aCCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAgg < 1:925402/69‑1 (MQ=255)
aCCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAgg < 1:1096313/69‑1 (MQ=255)
aCCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAgg < 1:2887300/69‑1 (MQ=255)
aCCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAgg < 1:2238478/69‑1 (MQ=255)
aCCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAgg < 1:1634081/69‑1 (MQ=255)
gtgCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACCCTTTGCGCAGGTaa > 1:3191025/1‑68 (MQ=255)
gtgCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTaa > 1:44750/1‑68 (MQ=255)
gtgCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTaa > 1:3395034/1‑68 (MQ=255)
gtgCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTaa > 1:2752143/1‑68 (MQ=255)
gtgCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTaa > 1:2397359/1‑68 (MQ=255)
gtgCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTaa > 1:1840747/1‑68 (MQ=255)
gtgCCCCGATGATAGAAAAGACCA‑CAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAgg > 1:3149185/1‑69 (MQ=255)
ccccGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAgg < 1:595705/67‑1 (MQ=255)
ccccGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAgg < 1:2587660/67‑1 (MQ=255)
ccccGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAgg < 1:1474227/67‑1 (MQ=255)
ccccGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAgg < 1:1108963/67‑1 (MQ=255)
ccccGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAgg < 1:94520/67‑1 (MQ=255)
|
ACCGCCGCGACAACGGCAATAATTGGGCCGTGCCCCATATCCAGTGCAACCTGTGCCCCGATGATAGAAAAGACCACCAGTCCGAGCGCATCGAGCACCAGAAACACTTTGCGCAGGTAAGG > minE/2522233‑2522354
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
