Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,554,371 |
G→A |
53.8% |
L89L (CTC→CTT) |
envC ← |
protease with a role in cell division |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,554,371 | 0 | G | A | 53.8%
| 8.3
/ 78.1
| 91 | L89L (CTC→CTT) | envC | protease with a role in cell division |
| Reads supporting (aligned to +/- strand): ref base G (26/16); new base A (18/31); total (44/47) |
| Fisher's exact test for biased strand distribution p-value = 2.12e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGCTTCTTC > minE/2554315‑2554424
|
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:2274620/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:2308866/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:1744151/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:234418/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:3147799/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:344898/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:416736/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:44421/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:19461/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:1983639/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:2706489/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:1202171/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:1186044/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:2670687/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:2220498/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:1167499/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:821932/1‑69 (MQ=255)
tgctCTAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGTTTTGc > 1:2216472/1‑69 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2961031/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1743104/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1754142/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2282230/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1773414/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2565059/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1873859/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1888388/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2136500/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:274140/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1304659/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:246307/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2468640/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2408550/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:609840/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1169026/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1212643/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1300762/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:58978/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:575225/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1450366/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1456388/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:3413859/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2804135/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2797881/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTCttt < 1:203316/57‑1 (MQ=255)
ttGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATCAAGCGTGttt < 1:1681677/57‑1 (MQ=255)
cAATCGACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:1689299/53‑1 (MQ=255)
gACGCGTTCATCTCATCAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACgg > 1:972738/1‑69 (MQ=255)
gACGCGTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:3120414/48‑1 (MQ=255)
aCGCTTTCATCTCATCAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2743124/47‑1 (MQ=255)
gcgTTCATCTCATCAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTg < 1:2505200/69‑1 (MQ=255)
gcgTTCATCTCATCAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTg < 1:685408/69‑1 (MQ=255)
gcgTTCATCTCATCAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTg < 1:882413/69‑1 (MQ=255)
atctcatcAATCTGTTTATTCAGTTGATTAAGCGTGttt < 1:2553423/39‑1 (MQ=38)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTa < 1:1031950/54‑1 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTa > 1:1415883/1‑54 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTa < 1:1614813/54‑1 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTa > 1:1919689/1‑54 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCtt > 1:1498901/1‑64 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCtt > 1:2181536/1‑64 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCtt > 1:458189/1‑64 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCtt > 1:1384327/1‑64 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCtt > 1:872662/1‑64 (MQ=255)
tcatcaATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCt > 1:1019603/1‑63 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:1478414/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:536048/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:3107578/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:632526/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:1080727/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:1068434/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:1658310/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:824117/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:2084783/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:2671647/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:1037842/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:2609846/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:898896/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:2245262/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCt > 1:950805/1‑48 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACg > 1:2110981/1‑52 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCg > 1:112969/1‑69 (MQ=255)
tCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGct < 1:2450087/68‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:823068/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:1610464/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:3414835/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:3371581/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:2597466/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:2940920/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:1638298/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:2652252/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGcttct < 1:2733377/65‑1 (MQ=255)
tATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGCttcttc < 1:2846301/67‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCTCAGCTTACg < 1:2830677/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:2494857/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:2386249/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:933879/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:1760053/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:1624157/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:3099257/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:1392415/35‑1 (MQ=255)
tgattgaGCGTGTTTTGCGTTTCGCGCAGCTTACg < 1:1561820/35‑1 (MQ=255)
|
TGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCGCTTCTTC > minE/2554315‑2554424
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
