Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,855,148 |
G→A |
27.1% |
G194G (GGC→GGT) |
yjeS ← |
predicted Fe‑S electron transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,855,148 | 0 | G | A | 27.1%
| 98.9
/ 34.0
| 88 | G194G (GGC→GGT) | yjeS | predicted Fe‑S electron transport protein |
| Reads supporting (aligned to +/- strand): ref base G (44/20); new base A (7/17); total (51/37) |
| Fisher's exact test for biased strand distribution p-value = 1.36e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
GAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAATTCGCCTAAAA > minE/2855081‑2855212
|
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTg > 1:1105771/1‑68 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTg > 1:163987/1‑68 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGc > 1:1983218/1‑69 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGc > 1:2754713/1‑69 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGc > 1:2371354/1‑69 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGc > 1:2367294/1‑69 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGc > 1:3361684/1‑69 (MQ=255)
gAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGc > 1:416524/1‑69 (MQ=255)
tCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCa < 1:222639/68‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:1196772/69‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:232846/69‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:1032617/69‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:3278133/69‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:3239159/69‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:1939939/69‑1 (MQ=255)
gACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCAtcc < 1:1860301/69‑1 (MQ=255)
tGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGAc > 1:2597160/1‑69 (MQ=255)
tGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGAc > 1:2931522/1‑69 (MQ=255)
tGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGAc > 1:1835567/1‑69 (MQ=255)
tGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGAc > 1:2894155/1‑69 (MQ=255)
tGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGAc > 1:1002773/1‑69 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGAtac < 1:1249320/69‑3 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:3112487/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:2532289/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:3227867/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:2871364/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:2865319/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:2809574/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:1047922/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:1217954/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:419036/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:1493617/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:364900/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:1806411/69‑1 (MQ=255)
aTGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCCACTGGTTGATcc < 1:291670/69‑1 (MQ=255)
tGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:1944172/68‑1 (MQ=255)
tGGCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:3221820/68‑1 (MQ=255)
ggCTCCGGTCGGGCAAATCGTCATACAGGCCACGCATTTACCGCATCCTTCCTCGACTGGTTGATcc < 1:647996/67‑1 (MQ=255)
ctggCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCgg < 1:2519760/67‑1 (MQ=255)
cGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCgg < 1:526118/69‑1 (MQ=255)
cGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCgg < 1:3407542/69‑1 (MQ=255)
gggCAAATTGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCgg < 1:273273/68‑1 (MQ=255)
gTCATACAGGCCACGCGTTTACCGCATCCTTCCTc > 1:3084907/1‑35 (MQ=38)
gTCATACAGGCCACGCATTTACCGCATCCTTCCTc > 1:394722/1‑35 (MQ=255)
gTCATACAGGCCACGCATTTACCGCATCCTTCCTc > 1:641912/1‑35 (MQ=255)
gTCATACAGGCCACGCATTTACCGCATCCTTCCTc > 1:245751/1‑35 (MQ=255)
gTCATACAGGCCACGCATTTACCGCATCCTTCCTc > 1:1903048/1‑35 (MQ=255)
gTCATACAGGCCACGCATTTACCGCATCCTTCCTc > 1:666498/1‑35 (MQ=255)
gTCATACAGGCCACGCATTTAACGCATCCTTCCTc > 1:1745706/1‑35 (MQ=37)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:295013/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:3307469/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:934561/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:2681610/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:1008218/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:1680457/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:2403224/69‑1 (MQ=255)
aTACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc < 1:2438020/69‑1 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTgg > 1:1883194/1‑35 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGAt > 1:2620344/1‑40 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATc > 1:802175/1‑59 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:2924184/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:594704/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:2652259/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:38543/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:383207/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:1978585/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:61778/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:627590/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:321768/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCg > 1:2541640/1‑60 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCaa > 1:645061/1‑68 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCaa > 1:1702321/1‑68 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:1179080/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:1118290/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:762446/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:810224/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2719063/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:583501/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:1474338/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:1485228/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2119757/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2343396/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2409073/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2573547/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2979006/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2563941/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:2570562/1‑69 (MQ=255)
cAGGCCACGCATTTGCCGAATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAAt > 1:1115920/1‑69 (MQ=255)
cAGGACACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGc > 1:2546673/1‑66 (MQ=255)
tGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAATTCGCCTaaaa > 1:2466993/1‑66 (MQ=255)
|
GAGCATCGACGGTATATGGCTCGACGATGGCACCGGTCGGGCAAATCGTCATACAGGCCACGCATTTGCCGCATCCTTCCTCGACTGGTTGATCCACGGGCAGCGGAATATCGACCAGCAATTCGCCTAAAA > minE/2855081‑2855212
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
