Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F54 I1 R1
|
44 |
120.8 |
6135323 |
93.2% |
5718121 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,582,206 |
Δ1,222 bp |
IS1‑mediated |
[yhhZ]–yrhA |
[yhhZ], yrhA |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3582206 |
3584130–3583428 |
1223–1925 |
166 [1] |
[56] 61 |
[yhhZ]–[insB1] |
[yhhZ], yrhA, insA, [insB1] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3582205 | 1 (0.010) | 164 (1.350) |
91/198 |
0.1 |
99.4% |
coding (343/1179 nt) |
yhhZ |
putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
| ? | NC_000913 |
3583428 = |
NA (NA) | noncoding (1/768 nt) |
IS1 |
repeat region |
GATK/CNVnator alignment
N/A
