Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F112 I0 R1	51	112.5	5500062	95.1%	5230558	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,798,235	A→T	16.9%	intergenic (+28/+4)	waaL → / ← waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,798,235	0	A	T	16.9%	337.4 / 58.5	135	intergenic (+28/+4)	waaL/waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
Reads supporting (aligned to +/- strand): ref base A (49/63); new base T (12/11); total (61/74)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.89e-01

Only 100 of 138 total aligned reads displayed.

TTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTAT  >  NC_000913/3798137‑3798334

ttCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                    <  1:2419519/100‑1 (MQ=255)

  ccAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAAc                                                                                                  <  2:166564/100‑1 (MQ=255)

  ccAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAAc                                                                                                  >  1:2434036/1‑100 (MQ=255)

   cAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAAc                                                                                                  >  2:516230/1‑99 (MQ=255)

      ttATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAc                                                                                              <  2:54069/100‑1 (MQ=255)

         tCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCActtc                                                                                           <  1:2328506/100‑1 (MQ=255)

           nttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtctt                                                                                         >  1:1962844/2‑100 (MQ=255)

           aTTATATCCTCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtct                                                                                          <  2:579475/99‑1 (MQ=255)

           aTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCActtctt                                                                                         >  2:59147/1‑100 (MQ=255)

           aTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtctt                                                                                         <  2:2456487/100‑1 (MQ=255)

           aTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtctt                                                                                         >  1:1427683/1‑100 (MQ=255)

           aTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTAActtctt                                                                                         >  2:2254287/1‑100 (MQ=255)

            ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTa                                                                                        <  1:1033827/100‑1 (MQ=255)

             tataTCCGCTATAGTCCTTTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCActtct                                                                                          <  2:1907669/97‑1 (MQ=39)

             tataTCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCACTTCTTaa                                                                                       <  2:2015584/100‑2 (MQ=255)

             tataTCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCACTTCTTa                                                                                        <  2:1058577/99‑1 (MQ=255)

               tatCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCt                                                                                     >  1:558308/1‑100 (MQ=255)

               tagctgCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATc                                                                                      <  2:2652822/94‑1 (MQ=255)

                atCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTGATTAAGAATAAACAAGTTTATGAAGTGAGTTAAAACTCACTTCTTATCta                                                                                    >  2:683094/1‑100 (MQ=255)

                atCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCACTTCTTaaact                                                                                    <  2:1996957/100‑5 (MQ=38)

                    gCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACa                                                                                >  1:1031732/1‑100 (MQ=255)

                     cTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCACTTCTTaaacttgttt                                                                               <  1:2339635/100‑10 (MQ=37)

                       ataGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACt                                                                             <  1:806212/100‑1 (MQ=255)

                          gTCCTCTTGCTCGTCATTAATAATCGTAAAAATACAATTAATTAAGAATAAACAACTTTAAGAAGCGAGCTAAAAATGACTTCTTATCtat                                                                                   >  2:2330482/1‑91 (MQ=255)

                            ccTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtc                                                                        >  2:2084626/1‑100 (MQ=255)

                             ctctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtct                                                                       <  1:477614/100‑1 (MQ=255)

                              tctTACTCGTAATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTaa                                                                          <  2:1228854/96‑1 (MQ=255)

                               ctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                                                     >  1:1079348/1‑100 (MQ=255)

                                ttACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCtt                                                                    <  1:2364924/100‑1 (MQ=255)

                                 tACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCttt                                                                   <  1:1331388/100‑1 (MQ=255)

                                  aCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTATTTa                                                                  >  2:1337378/1‑100 (MQ=255)

                                   cTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTAc                                                                 <  2:1144001/100‑1 (MQ=255)

                                     cGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTATTTACTg                                                               >  1:312860/1‑100 (MQ=255)

                                     cGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAATAAGTTAAAACTCACTTCTTATCTATACAACTTAATATCTTTACt                                                                >  2:2681542/1‑99 (MQ=255)

                                        cATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAt                                                            <  2:1546046/100‑1 (MQ=255)

                                         aTTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAtt                                                           <  1:1614388/100‑1 (MQ=255)

                                           taataaTCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAg                                                         >  2:2351369/1‑100 (MQ=255)

                                              taatCTTAACAATATAATTAATTAACAATAAACAATTTTAAGAAGTTAGTTAAATCTTACTTCTTATCTATACATCTTAATTTCTTTACTGAATTAGTTa                                                      <  2:2180025/100‑1 (MQ=255)

                                              taatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTa                                                      >  1:2175047/1‑100 (MQ=255)

                                              taatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTa                                                      >  1:1314166/1‑100 (MQ=255)

                                                 tCGTAACAATGCAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATATATACAACTTAAGCGCTTTACTGAATTAGTTaaa                                                    <  2:1414910/99‑1 (MQ=255)

                                                 tCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAg                                                   <  1:2215595/100‑1 (MQ=255)

                                                   gTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGACTTAGTTAAAGtt                                                 >  1:379598/1‑100 (MQ=255)

                                                     aaCAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                               <  1:2588187/100‑1 (MQ=255)

                                                     aaCAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                               <  1:584845/100‑1 (MQ=255)

                                                     aaCAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                               <  1:865874/100‑1 (MQ=255)

                                                      acaatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCa                                              <  2:2128098/100‑1 (MQ=255)

                                                       caatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAg                                             <  2:1136777/100‑1 (MQ=255)

                                                       caatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAg                                             >  1:1071931/1‑100 (MQ=255)

                                                       caatacaatTAATTAAGAATAAACAAGTTGAAGAAGTTAGTTAAAACTCACTTCTTATCTATACAATTTAATCTCTTTACTGAATTAGTTAAAGTTTCAg                                             <  2:1650814/100‑1 (MQ=255)

                                                        aatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCatt                                            >  2:1255502/1‑98 (MQ=255)

                                                        aatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAg                                             <  2:2464143/99‑1 (MQ=255)

                                                        aatacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGt                                            >  1:1434126/1‑100 (MQ=255)

                                                        aatacaatTAATTAAGAATAAACAACTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCa                                              <  2:1670103/98‑1 (MQ=255)

                                                         atacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTa                                           >  2:1749246/1‑100 (MQ=255)

                                                            caatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCg                                        >  1:1597839/1‑100 (MQ=255)

                                                            caatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCg                                        >  1:1875152/1‑100 (MQ=255)

                                                            caatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCg                                        <  1:2276434/100‑1 (MQ=255)

                                                            caatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCg                                        >  2:2691450/1‑100 (MQ=255)

                                                             aattaattAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGa                                       <  1:582120/100‑1 (MQ=255)

                                                                  attaaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCt                                  >  1:370858/1‑100 (MQ=255)

                                                                   ttaaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtt                                 <  2:321533/100‑1 (MQ=255)

                                                                   ttaaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtt                                 >  1:252333/1‑100 (MQ=255)

                                                                    taaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCttt                                >  1:1531534/1‑100 (MQ=255)

                                                                     aaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtttt                               >  2:233826/1‑100 (MQ=255)

                                                                     aaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtttt                               <  1:1009085/100‑1 (MQ=255)

                                                                      aGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTa                              <  1:2705775/100‑1 (MQ=255)

                                                                      aGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTa                              >  1:1904061/1‑100 (MQ=255)

                                                                       gAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTAc                             <  1:1710320/100‑1 (MQ=255)

                                                                         aTAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCg                           <  1:2156807/100‑1 (MQ=255)

                                                                          tAAACGAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAATTAAAGATTCAGTATCGATATCTTTTACCgc                          >  2:113046/1‑99 (MQ=255)

                                                                            aaCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtat                        >  2:1398583/1‑100 (MQ=255)

                                                                            aaCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtat                        >  2:1377598/1‑100 (MQ=255)

                                                                             aCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtata                       <  2:942794/100‑1 (MQ=255)

                                                                              cAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTatat                      >  1:1772801/1‑100 (MQ=255)

                                                                              cAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTatat                      >  2:2436477/1‑100 (MQ=255)

                                                                              cAAGTTTAAGAAGTGAGTTAAAACGCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtata                       >  1:627936/1‑99 (MQ=255)

                                                                               aaGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATg                     <  1:2260772/100‑1 (MQ=255)

                                                                                 gTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGtt                   >  2:1880822/1‑100 (MQ=255)

                                                                                 gTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGtt                   >  1:585681/1‑100 (MQ=255)

                                                                                   ttAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgg                 <  1:1271096/100‑1 (MQ=255)

                                                                                   ttAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTAACGTATATGTTgg                 >  2:1291388/1‑100 (MQ=255)

                                                                                    tAAGAAGTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTggg                >  1:155250/1‑100 (MQ=255)

                                                                                    tAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTggg                <  1:746530/100‑1 (MQ=255)

                                                                                     aagaagTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgggg               <  2:1454365/100‑1 (MQ=255)

                                                                                      agaagTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGTGa              >  2:375124/1‑100 (MQ=255)

                                                                                      agaagTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGa              <  1:616314/100‑1 (MQ=255)

                                                                                       gaagTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGAt             >  2:1939945/1‑100 (MQ=255)

                                                                                       gaagTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGAt             >  2:288034/1‑100 (MQ=255)

                                                                                          gTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACt          >  2:866024/1‑100 (MQ=255)

                                                                                          gTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACt          <  1:2028198/100‑1 (MQ=255)

                                                                                              gTTAAAACTCACTTCTTATTTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTGTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAtt       <  2:698231/99‑1 (MQ=255)

                                                                                              gTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAATTTTCAGTATCGATATTTTTTACCGTATATGTTGGGGATACTAtt       >  2:1609367/1‑99 (MQ=255)

                                                                                              gTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAttt      <  2:1572135/100‑1 (MQ=255)

                                                                                              gTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAttt      >  2:696017/1‑100 (MQ=255)

                                                                                              gTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAttt      >  2:1247431/1‑100 (MQ=255)

                                                                                               ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg     <  1:1908835/100‑1 (MQ=255)

                                                                                               ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg     <  2:2276745/100‑1 (MQ=255)

                                                                                               ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg     <  1:782360/100‑1 (MQ=255)

                                                                                                  aaaCTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAGAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGtat  <  1:1971305/100‑1 (MQ=255)

TTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTAT  >  NC_000913/3798137‑3798334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A