Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F70 I1 R1 13 113.0 5677813 94.3% 5354177 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 702,352 Δ21 bp coding (380‑400/1149 nt) nagA ← N‑acetylglucosamine‑6‑phosphate deacetylase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 702352 702372 21 114 [0] [0] 115 nagA N‑acetylglucosamine‑6‑phosphate deacetylase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 7023510 (0.000)113 (1.000) 77/196 0.3 100% coding (401/1149 nt) nagA N‑acetylglucosamine‑6‑phosphate deacetylase
?NC_000913 702373 = 0 (0.000)coding (379/1149 nt) nagA N‑acetylglucosamine‑6‑phosphate deacetylase

GATK/CNVnator alignment

N/A