Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F64 I1 R1
|
17 |
68.2 |
3417408 |
93.4% |
3191859 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,058,570 |
A→T |
intergenic (‑160/+96) |
serA ← / ← rpiA |
D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,058,570 | 0 | A | T | 100.0%
| 229.3
/ NA
| 63 | intergenic (‑160/+96) | serA/rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (26/37); total (26/37) |
AAAATAATATTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTATTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGTTCCCCCGTCAG > NC_000913/3058473‑3058664
|
aaaaTAATATTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGatttttt < 2:2450301/100‑1 (MQ=255)
aaaaTAATATTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGatttttt < 2:1718808/100‑1 (MQ=255)
taataTTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTaga < 1:127908/100‑1 (MQ=255)
taataTTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTaga < 2:577613/100‑1 (MQ=255)
taataTTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTaga < 1:577613/100‑1 (MQ=255)
taataTTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTaga < 2:127908/100‑1 (MQ=255)
aataTTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTagag < 2:2514486/100‑1 (MQ=255)
tatTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCa > 2:2260233/1‑100 (MQ=255)
atTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCaa > 2:2022547/1‑100 (MQ=255)
tGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATc < 2:1778623/100‑1 (MQ=255)
gCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCg < 2:2211852/100‑1 (MQ=255)
cGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGa > 2:2118181/1‑100 (MQ=255)
tccgatctGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGAc < 2:1237324/93‑1 (MQ=255)
ggCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGAc < 2:1778737/100‑1 (MQ=255)
gCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACa < 2:210583/100‑1 (MQ=255)
gCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACa < 1:210583/100‑1 (MQ=255)
atatGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACagat > 2:192882/1‑97 (MQ=255)
atatGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACagat > 1:192882/1‑97 (MQ=255)
tatGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTg < 2:2533289/100‑1 (MQ=255)
tGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGcc < 2:2039919/100‑1 (MQ=255)
tGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGcc > 2:2464032/1‑100 (MQ=255)
aaCGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTg < 2:33793/100‑1 (MQ=255)
aaCGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTg < 1:33793/100‑1 (MQ=255)
cGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGt > 1:155926/1‑100 (MQ=255)
cGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGt < 2:396809/100‑1 (MQ=255)
cGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGt < 1:396809/100‑1 (MQ=255)
cGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGt > 2:155926/1‑100 (MQ=255)
gCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAg > 2:2369116/1‑100 (MQ=255)
cGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGc > 2:1335353/1‑100 (MQ=255)
cgcgATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTg < 2:2278529/100‑1 (MQ=255)
aTGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGacac < 2:1773107/100‑1 (MQ=255)
ttGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATg < 2:360130/100‑1 (MQ=255)
ttGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATg < 1:360130/100‑1 (MQ=255)
tGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGt > 1:490465/1‑100 (MQ=255)
tGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGt > 2:490465/1‑100 (MQ=255)
tGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGt > 2:2032100/1‑100 (MQ=255)
gAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTc < 2:842507/100‑1 (MQ=255)
gAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTc < 1:842507/100‑1 (MQ=255)
atatCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCaaa < 2:2183763/100‑1 (MQ=255)
tatCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAAt < 2:1108537/100‑1 (MQ=255)
cGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCATATTTAAt < 2:1352633/100‑1 (MQ=255)
gCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATg < 2:1891493/100‑1 (MQ=255)
aaGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAag < 2:1052776/100‑1 (MQ=255)
aGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAaga > 2:203943/1‑100 (MQ=255)
aGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAaga > 1:203943/1‑100 (MQ=255)
aGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAaga < 2:1870491/100‑1 (MQ=255)
tAATTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGaa < 2:1867265/100‑1 (MQ=255)
aTTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAtt > 2:792376/1‑100 (MQ=255)
aTTCTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAtt > 1:792376/1‑100 (MQ=255)
cTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAttttt > 2:1665903/1‑100 (MQ=255)
cTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAttttt > 1:306954/1‑100 (MQ=255)
cTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAttttt < 2:2354791/100‑1 (MQ=255)
cTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAttttt < 2:1156616/100‑1 (MQ=255)
cTTGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAttttt > 2:306954/1‑100 (MQ=255)
ttGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAtttttt > 2:1637520/1‑100 (MQ=255)
ttGGATGAATATGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAAtttttt < 2:1157054/100‑1 (MQ=255)
atatGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACgggg > 2:2545096/1‑100 (MQ=255)
atGCTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGa > 2:1169954/1‑100 (MQ=255)
cTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGt > 1:661002/1‑100 (MQ=255)
cTGGTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGt > 2:661002/1‑100 (MQ=255)
ggTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGTTc < 2:588592/100‑1 (MQ=255)
ggTTTAGAGGATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGTTc < 1:588592/100‑1 (MQ=255)
ggATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGTTCCCCCGTCa > 2:1235170/1‑100 (MQ=255)
ggATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGTTCCCCCGTCa < 2:1025452/100‑1 (MQ=255)
gATTTTTTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGCAGAGAATTTTTTTAACGGGGGAGGTTCCCCCGTCAg < 2:1811350/100‑1 (MQ=255)
|
AAAATAATATTGCGGCAATATGAACGTTTGCGTCGCGATGTTGAGGAAATATCACGCAAAGGTAATTCTTGGATGAATATGCTGGTTTAGAGGATTTATTTAGAGCAATCGACAATTGCCTGGTAAAAGCGTGACACATGTCACCAAATTTAATGAAGAGAATTTTTTTAACGGGGGAGGTTCCCCCGTCAG > NC_000913/3058473‑3058664
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
