Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F232 I0 R1 243 156.3 7646460 93.8% 7172379 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,296,060 C→T 100% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT96.1% 237.7 / 0.0 105intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base C (2/3);  new base T (52/48);  total (54/51)
Fisher's exact test for biased strand distribution p-value = 6.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

TAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT  >  NC_000913/4295963‑4296155
                                                                                                  |                                                                                               
tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc                                                                                               <  1:3788924/100‑1 (MQ=18)
tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc                                                                                               <  1:1722022/100‑1 (MQ=18)
 gccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc                                                                                              >  2:1906467/3‑100 (MQ=11)
 aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                              >  2:8189/1‑100 (MQ=17)
 aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                              >  1:3536906/1‑100 (MQ=18)
 aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                              <  1:3254581/100‑1 (MQ=18)
 aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                              >  1:1727115/1‑100 (MQ=18)
  aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt                                                                                             <  2:3644890/100‑1 (MQ=18)
   cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                              <  2:533539/98‑1 (MQ=18)
   cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTg                                                                                            >  2:2338359/1‑100 (MQ=17)
   cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTg                                                                                            >  2:473788/1‑100 (MQ=17)
    gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa                                                                                           >  1:291231/1‑100 (MQ=18)
     cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                          <  2:3642047/100‑1 (MQ=18)
     cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                          <  2:3141378/100‑1 (MQ=17)
     cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                          <  2:2877323/100‑1 (MQ=18)
      gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg                                                                                         >  2:2166581/1‑100 (MQ=18)
      gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg                                                                                         >  1:563242/1‑100 (MQ=18)
      gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg                                                                                         >  1:1285207/1‑100 (MQ=18)
      gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg                                                                                         <  2:275821/100‑1 (MQ=18)
       tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                                        <  1:3190133/100‑1 (MQ=18)
        cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCg                                                                                       >  1:2737005/1‑100 (MQ=18)
        cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCg                                                                                       <  2:588641/100‑1 (MQ=18)
        cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCg                                                                                       >  2:1754923/1‑100 (MQ=17)
          tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc                                                                                     <  1:723990/100‑1 (MQ=18)
          tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc                                                                                     >  1:3691761/1‑100 (MQ=18)
          tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc                                                                                     >  2:1618663/1‑100 (MQ=18)
           aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg                                                                                    >  1:930756/1‑100 (MQ=18)
           aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg                                                                                    >  1:434046/1‑100 (MQ=17)
            tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGc                                                                                   <  2:38055/100‑1 (MQ=18)
            tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGc                                                                                   <  2:2540481/100‑1 (MQ=18)
             cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGca                                                                                  <  2:3058032/100‑2 (MQ=18)
             cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt                                                                                  >  1:680564/1‑100 (MQ=18)
             cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt                                                                                  >  1:3399033/1‑100 (MQ=17)
               ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                                >  2:3631499/1‑100 (MQ=18)
               ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                                <  1:3350850/100‑1 (MQ=25)
               ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                                <  2:373863/100‑1 (MQ=25)
               ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                                >  1:1617153/1‑100 (MQ=25)
                gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                               >  1:1601218/1‑100 (MQ=25)
                gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                               >  1:1657325/1‑100 (MQ=25)
                 ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                              >  1:473761/1‑100 (MQ=25)
                 ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                              >  1:771049/1‑100 (MQ=25)
                 ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                              <  1:2409832/100‑1 (MQ=25)
                  cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg                                                                             >  1:55443/1‑100 (MQ=25)
                  cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg                                                                             >  1:3271470/1‑100 (MQ=25)
                   tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc                                                                            <  1:3030654/100‑1 (MQ=25)
                   tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc                                                                            >  1:2998630/1‑100 (MQ=38)
                   tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc                                                                            >  1:3266884/1‑100 (MQ=25)
                    aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑GTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg                                                                             <  2:2107830/98‑1 (MQ=255)
                    aCGCCAGACAGCGCAATAGCCTGATTCACCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTCATGTGACGCTTGcc                                                                              >  2:1893285/1‑97 (MQ=11)
                     cggcAGACAGCGCAATGGCCTGATTTAGCGTGA‑GTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg                                                                             <  2:2107694/94‑1 (MQ=11)
                      gCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc                                                                         <  1:200517/100‑1 (MQ=25)
                       ccAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc                                                                         >  1:2471260/1‑99 (MQ=25)
                       ccAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt                                                                        <  1:3170584/100‑1 (MQ=25)
                       ccAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTACGTCGGATAAGGCGATTACGCCGCACCCGACATCCATGCCTGATGCGACGCTTGCCGCGt                                                                          >  2:3494402/1‑98 (MQ=11)
                        cAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                       <  2:1415723/100‑1 (MQ=25)
                        cAGACAGCGCAATAGCATGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt                                                                        <  2:3755218/99‑1 (MQ=255)
                         aGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                       <  2:2671/99‑1 (MQ=25)
                          gcctgcgcGATGGCCTGCCTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa                                                                      <  2:457838/95‑1 (MQ=11)
                          gACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                     >  2:2137189/1‑100 (MQ=12)
                          gACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                     <  1:408595/100‑1 (MQ=25)
                           aCAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                    <  1:746477/100‑1 (MQ=38)
                           aCAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                    <  1:2397627/100‑1 (MQ=25)
                           aCAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                    <  1:2578294/100‑1 (MQ=25)
                            cAGCGCAATAGCCTGATTTGGCGTGATTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCATCAATGTCTGATGCGATGC‑TGACGTGTCTTATCa                                                                   >  1:3298021/1‑100 (MQ=11)
                            cAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                   <  1:1102003/100‑1 (MQ=25)
                            cAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCATTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                   >  1:1742139/1‑100 (MQ=255)
                             aGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                  >  1:1131902/1‑100 (MQ=25)
                              gcgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                 >  1:3318726/1‑100 (MQ=38)
                              gcgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                 >  1:3799951/1‑100 (MQ=25)
                              gcgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                 >  2:815295/1‑100 (MQ=25)
                              gcgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                  >  1:2976614/1‑99 (MQ=25)
                              gcgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCATGCCGCGTCTTATCAgg                                                                 >  1:1692522/1‑100 (MQ=255)
                              ccgcAATGGCATGATTTAGCGTGA‑ATTTGTAGGACGGATAAGACGTGTACGCCGCATAGTACATCAATGCCTGATGCGACGCTTGCCGCGTCTTCTCAg                                                                  >  2:801525/2‑99 (MQ=11)
                               cggacgcgCCGGAGTTAGCGTGA‑TTGTGTAGTTCGGACAAGGCGTAGACGCCGCAGCCGACATGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                 <  1:3623820/92‑1 (MQ=14)
                               cgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                >  2:2877876/1‑100 (MQ=25)
                               cgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                <  1:2865219/100‑1 (MQ=25)
                               cgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                <  2:2597264/100‑1 (MQ=25)
                               cgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                <  2:2146620/100‑1 (MQ=25)
                               cgcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                >  2:1112568/1‑100 (MQ=25)
                                gctatggCCTGATTGAGCGTGA‑TTTTGTAGGTGGGTTAAGGGGTTTGCGCCCCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                <  2:366736/93‑1 (MQ=11)
                                gcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                               <  1:1288356/100‑1 (MQ=25)
                                gcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                               <  2:1321326/100‑1 (MQ=25)
                                gcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                               <  1:1653452/100‑1 (MQ=25)
                                gcAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                               >  2:2381549/1‑100 (MQ=25)
                                gcAATAGCCTGATTTAGCGTGA‑TTTTCTAGGTCGCATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                   <  2:1868295/96‑1 (MQ=11)
                                gcAATAGCATGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                               <  2:2608330/100‑1 (MQ=255)
                                  aaTAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                             >  1:3393725/1‑100 (MQ=25)
                                   aTAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat                                                            >  1:3111337/1‑99 (MQ=25)
                                    taccatGATTTAGCGTGA‑TTTTGTGGGTCTGATAAGTCGTATACGCCCCACCATGCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatc                                                           <  2:753661/95‑3 (MQ=2)
                                     tccgatctttAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct                                                          <  2:1301844/93‑4 (MQ=11)
                                     aGCCTGATTTAGCGTGA‑TTTTGTAGGTCGTATAAGGCGTTTACGCCGCGTCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct                                                          <  2:1443416/100‑4 (MQ=11)
                                     aGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                             >  2:2723363/1‑97 (MQ=17)
                                      gCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                                         >  2:3398772/1‑96 (MQ=9)
                                      gCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                                         <  1:1335814/100‑5 (MQ=12)
                                      gCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                                         >  1:1117584/1‑96 (MQ=12)
                                      gCCAGATTGAGCGTCA‑TTTTTTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                                         <  2:1605735/100‑5 (MQ=11)
                                       ccTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctta                                                        >  2:744679/1‑95 (MQ=2)
                                       ccTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctta                                                        >  2:2743406/1‑95 (MQ=2)
                                       ccTGATTTAGCGTGA‑TTTTGTAGGTCGGATAACGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCCTCTTATCCGGCCt                                                              >  1:2614931/1‑94 (MQ=11)
                                                                                                aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTac  <  2:2646771/98‑2 (MQ=17)
                                                                                                  |                                                                                               
TAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGA‑TTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT  >  NC_000913/4295963‑4296155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A