Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F255 I1 R1 77 120.7 6116409 93.2% 5700493 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,587,690 Δ1 bp coding (742/915 nt) mrr → methylated adenine and cytosine restriction protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,587,6870G.97.7% 383.9 / 1.4 87coding (739/915 nt)mrrmethylated adenine and cytosine restriction protein
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base . (41/44);  total (42/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.05e-01

AGAAAGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTGGGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGCCTGGTGCAC  >  NC_000913/4587589‑4587785
                                                                                                  |                                                                                                  
agaAAGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTgg                                                                                                   >  2:2430829/1‑100 (MQ=255)
 gaAAGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTggg                                                                                                  >  1:2486398/1‑100 (MQ=255)
 gaAAGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTggg                                                                                                  >  1:1747275/1‑100 (MQ=255)
 gaAAGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTggg                                                                                                  <  1:1894916/100‑1 (MQ=255)
  aaaGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTgggt                                                                                                 >  1:1334191/1‑99 (MQ=255)
      tttATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGttt                                                                                            <  2:1590789/100‑1 (MQ=255)
      tttATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCAAAGAAAAAAAAAAAAGCGAAACGT‑GGGTGttt                                                                                            <  2:2683690/100‑1 (MQ=255)
       ttATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GCGTGTtta                                                                                           <  2:2135715/100‑1 (MQ=255)
         aTGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTttatt                                                                                         <  1:688315/100‑1 (MQ=255)
          tGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTttatta                                                                                        <  1:1340998/100‑1 (MQ=255)
          tGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTttatta                                                                                        >  1:2113670/1‑100 (MQ=255)
           gTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTAc                                                                                       >  2:2835881/1‑100 (MQ=255)
           gTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTAc                                                                                       <  2:1393600/100‑1 (MQ=255)
           gTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTAc                                                                                       >  1:1981760/1‑100 (MQ=255)
            ttCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTAcc                                                                                      >  1:1426357/1‑100 (MQ=255)
            ttCAGGCAAAACGTTGGCAGAATACTGTAATCAGGCCAGAATTACATGCATTTTACGGCAAAAAAAAAAAGAAAAAAGCGAAACGT‑GGGTGTTTATTAcc                                                                                      <  2:120846/100‑1 (MQ=255)
              cAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCAc                                                                                    <  1:501509/100‑1 (MQ=255)
                ggCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACtt                                                                                  >  2:626672/1‑100 (MQ=255)
                ggCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACtt                                                                                  >  1:16011/1‑100 (MQ=255)
                     aaCGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGa                                                                             <  1:2939/100‑1 (MQ=255)
                      aCGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGAt                                                                            >  2:1361435/1‑100 (MQ=255)
                      aCGTTGGCAGAATACTGTAAGCAAGACAGAATTACAGGCATTTTACGGCGAAAAAAAAAAACAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGAt                                                                            <  2:1970608/100‑1 (MQ=255)
                        gTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGAttt                                                                          <  2:2381713/100‑1 (MQ=255)
                        gTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGAttt                                                                          >  1:2260916/1‑100 (MQ=255)
                        gTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGAttt                                                                          <  1:75864/100‑1 (MQ=255)
                          tGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTAc                                                                        >  1:2312557/1‑100 (MQ=255)
                          tGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTAc                                                                        <  2:1705938/100‑1 (MQ=255)
                          tGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTAc                                                                        >  2:2537591/1‑100 (MQ=255)
                           ggCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTGGGGTGTTTATTACCACTTCTGGCTTTa                                                                         >  1:560292/1‑99 (MQ=255)
                           ggCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACt                                                                       >  2:864640/1‑100 (MQ=255)
                           ggCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACt                                                                       >  2:1897686/1‑100 (MQ=255)
                            gCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACtt                                                                      >  1:714285/1‑100 (MQ=255)
                               gAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTtctc                                                                   <  2:1194261/100‑1 (MQ=255)
                               gAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTtctc                                                                   <  1:961489/100‑1 (MQ=255)
                                aaTACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCa                                                                  <  2:2465526/100‑1 (MQ=255)
                                aaTACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCa                                                                  <  1:956286/100‑1 (MQ=255)
                                  tACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAgg                                                                <  1:944890/100‑1 (MQ=255)
                                   aCTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGgc                                                               >  2:1002133/1‑100 (MQ=255)
                                    cTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGgcg                                                              >  2:972477/1‑100 (MQ=255)
                                    cTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGgcg                                                              >  2:971997/1‑100 (MQ=255)
                                      gTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGcgcg                                                            >  2:278741/1‑100 (MQ=255)
                                       tAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGt                                                           <  1:393870/100‑1 (MQ=255)
                                             ggtcAGAATTACAGGCATTTTACGGCGCTCTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTCTTACCACTTCTGGATTTACTTCTCTGGCGCGTGACttt                                                     <  2:1884786/97‑1 (MQ=255)
                                             ggcCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACttt                                                     >  2:720099/1‑100 (MQ=255)
                                               ccAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGc                                                   <  2:2639040/100‑1 (MQ=255)
                                                cAGACTTACAGGCCTTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGcc                                                  <  1:1977600/100‑1 (MQ=255)
                                                cAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGcc                                                  >  2:1620394/1‑100 (MQ=255)
                                                cAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGcc                                                  >  2:1658131/1‑100 (MQ=255)
                                                 aGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGccc                                                 <  1:1658150/100‑1 (MQ=255)
                                                 aGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGccc                                                 <  1:484189/100‑1 (MQ=255)
                                                 aGAATTACAGGCATTTTACGGCGCACTGACTAAGAAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGccc                                                 <  2:2566806/100‑1 (MQ=255)
                                                    aTTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAAt                                              <  1:2815098/100‑1 (MQ=255)
                                                    aTTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAAt                                              >  1:1985646/1‑100 (MQ=255)
                                                     ttACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATc                                             <  2:1720410/100‑1 (MQ=255)
                                                       aCAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCg                                           <  2:958479/100‑1 (MQ=255)
                                                        cAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGt                                          >  1:2946920/1‑100 (MQ=255)
                                                        cAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGt                                          <  1:2430861/100‑1 (MQ=255)
                                                         aGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGt                                          >  2:1775481/1‑99 (MQ=255)
                                                             aTTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑AGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAgg                                     >  2:1639509/1‑100 (MQ=255)
                                                              ttttACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAggg                                    <  1:2877130/100‑1 (MQ=255)
                                                                 tACGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTAt                                 >  1:2912313/1‑100 (MQ=255)
                                                                  aCGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATg                                >  2:110171/1‑100 (MQ=255)
                                                                  aCGGCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATg                                >  1:1852353/1‑100 (MQ=255)
                                                                    ggCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGgt                              >  2:1851854/1‑100 (MQ=255)
                                                                    ggCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGgt                              <  2:2609204/100‑1 (MQ=255)
                                                                    ggCGCACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGgt                              >  2:181870/1‑100 (MQ=255)
                                                                     gcgcACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGgtg                             >  1:2001169/1‑100 (MQ=255)
                                                                     gcgcACTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGgtg                             <  1:2615662/100‑1 (MQ=255)
                                                                         aCTGGCTGGGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTgttgg                         <  1:1520964/100‑1 (MQ=255)
                                                                           tggctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTgttggtt                       <  2:553744/100‑1 (MQ=255)
                                                                           tggctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTgttggtt                       <  2:2486365/100‑1 (MQ=255)
                                                                           tggctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTgttggtt                       >  2:2347474/1‑100 (MQ=255)
                                                                            ggctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTgttggttg                      >  1:1243466/1‑100 (MQ=255)
                                                                            ggctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTgttggttg                      >  2:2840210/1‑100 (MQ=255)
                                                                             gctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGa                     >  2:1237917/1‑100 (MQ=255)
                                                                             gctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGa                     <  2:733768/100‑1 (MQ=255)
                                                                              ctggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGAt                    >  1:453803/1‑100 (MQ=255)
                                                                               tggGCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATg                   >  2:2806991/1‑100 (MQ=255)
                                                                                gggCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATgg                  <  2:632753/100‑1 (MQ=255)
                                                                                gggCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATgg                  <  1:1586067/100‑1 (MQ=255)
                                                                                  gCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATgggg                <  2:1985622/100‑1 (MQ=255)
                                                                                  gCAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATgggg                >  2:360225/1‑100 (MQ=255)
                                                                                   cAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGa               >  2:1735825/1‑100 (MQ=255)
                                                                                   cAAAAAGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGa               >  2:1256687/1‑100 (MQ=255)
                                                                                    aaaaaGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGaa              <  1:626680/100‑1 (MQ=255)
                                                                                     aaaaGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGCGGGTATGGTGTTGGTTTATGGGGAAc             >  2:1184775/1‑100 (MQ=255)
                                                                                        aGCGAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGcc          <  1:1256699/100‑1 (MQ=255)
                                                                                          cGAAACGT‑GGGTGTTTATTACCACTGCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGcc          >  2:440433/1‑98 (MQ=255)
                                                                                           gAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGCCTgg       <  2:702863/100‑1 (MQ=255)
                                                                                           gAAACGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGCCTgg       <  1:720107/100‑1 (MQ=255)
                                                                                             aaCGT‑GGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGCCTGGTg     <  1:1477515/100‑1 (MQ=255)
                                                                                                 tGGGGTGTTTGTTACCACTTCTGGCTTTCCTTCTAAGGACGGTGACATTGCCCAATCCGTCTAAGATATGCTGTTGCTTGATGGCGAACGCCTGTTTCAc  <  2:560285/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
AGAAAGTTTATGTTCAGGCAAAACGTTGGCAGAATACTGTAGGCAGGCCAGAATTACAGGCATTTTACGGCGCACTGGCTGGGCAAAAAGCGAAACGTGGGGTGTTTATTACCACTTCTGGATTTACTTCTCAGGCGCGTGACTTTGCCCAATCCGTCGAGGGTATGGTGTTGGTTGATGGGGAACGCCTGGTGCAC  >  NC_000913/4587589‑4587785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A