Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I1 R1
|
132 |
116.1 |
5785507 |
94.2% |
5449947 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,200,184 |
(A)7→5 |
intergenic (+90/‑96) |
yjaG → / → hupA |
DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,200,179 | 0 | A | . | 98.6%
| 316.8
/ ‑2.2
| 73 | intergenic (+85/‑102) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (28/44); total (28/45) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
| * | NC_000913 | 4,200,180 | 0 | A | . | 98.6%
| 316.9
/ ‑2.4
| 73 | intergenic (+86/‑101) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (28/44); total (28/45) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 |
TTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAG > NC_000913/4200081‑4200272
||
tttttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaa < 1:780937/100‑1 (MQ=255)
tttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa > 2:828452/1‑100 (MQ=255)
tCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaag < 1:2288892/100‑2 (MQ=255)
cAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaag > 2:1101606/1‑98 (MQ=255)
aGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtg < 1:773311/100‑4 (MQ=255)
aGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtg > 2:2019844/1‑97 (MQ=255)
aGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtg < 1:1590138/100‑4 (MQ=255)
aGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa > 2:2345244/1‑96 (MQ=255)
gCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtgg < 2:2373494/100‑5 (MQ=255)
gCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtgg > 1:976219/1‑96 (MQ=255)
cAATAAGACCAGAAAACGTTATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtggc < 1:2020632/100‑6 (MQ=255)
cAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtggc > 1:1898822/1‑95 (MQ=255)
cAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtggc < 2:1464879/100‑6 (MQ=255)
aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtggct > 2:234565/1‑94 (MQ=255)
aTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaagtggcta > 1:2856950/1‑93 (MQ=255)
aaGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATc < 1:1773595/100‑1 (MQ=255)
aaGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATc > 2:825983/1‑100 (MQ=255)
gACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCgg > 2:207182/1‑100 (MQ=255)
ngAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCg > 1:291515/2‑100 (MQ=255)
aGAAAACGTGCTTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCg < 2:1898808/100‑1 (MQ=255)
aGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCg > 1:1376393/1‑100 (MQ=255)
aaaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCgtg < 1:940683/100‑1 (MQ=255)
aaaaCGTGATTTAACGCCTGATGTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCgtg < 2:670483/100‑1 (MQ=255)
aCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTAt < 1:1605771/100‑1 (MQ=255)
cGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATg < 2:1049718/100‑1 (MQ=255)
gTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGc < 2:126523/100‑1 (MQ=255)
gTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGc < 2:580540/100‑1 (MQ=255)
gTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGc < 2:264146/100‑1 (MQ=255)
tGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCa < 1:250876/100‑1 (MQ=255)
tGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTGCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑ACAAAGTGGCTATCGGTGCGTGTATGCa < 1:1758975/100‑1 (MQ=255)
gATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:56535/1‑100 (MQ=255)
gATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAg < 1:710300/100‑1 (MQ=255)
aTTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:571826/100‑1 (MQ=255)
aTTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAgg < 2:508498/100‑1 (MQ=255)
tttAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGga > 2:786014/1‑100 (MQ=255)
ttAACGCCTGAGTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGgag < 2:698188/100‑1 (MQ=255)
cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTg > 1:211592/1‑100 (MQ=255)
cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTg > 2:516564/1‑100 (MQ=255)
gCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGc < 2:491367/100‑1 (MQ=255)
gCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGc < 1:1299169/100‑1 (MQ=255)
tGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt < 2:976217/100‑1 (MQ=255)
tGATTTGTCGTACCTGGAGTCTTCCCTTTCACCGCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGAAGAGTGCTAt > 2:1896664/1‑100 (MQ=255)
aTTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTc > 1:284469/1‑100 (MQ=255)
tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGTGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTCTTc > 2:2377482/1‑99 (MQ=255)
tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTgg > 1:2389191/1‑100 (MQ=255)
tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTgg > 2:1367260/1‑100 (MQ=255)
cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAt < 2:2335321/100‑1 (MQ=255)
cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAt < 1:2531697/100‑1 (MQ=255)
gTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAtt < 1:234566/100‑1 (MQ=255)
tACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAt < 2:1934063/98‑1 (MQ=255)
tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc < 1:1081276/100‑1 (MQ=255)
cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt > 1:2193734/1‑100 (MQ=255)
tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCg < 1:2097385/100‑1 (MQ=255)
cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTcaa > 2:1759428/1‑98 (MQ=255)
cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGa > 2:2711193/1‑100 (MQ=255)
ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt > 2:1732809/1‑100 (MQ=255)
ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:721025/100‑1 (MQ=255)
cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATg > 2:1507444/1‑100 (MQ=255)
ttCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCt > 2:221044/1‑100 (MQ=255)
tCGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCtt > 1:1375788/1‑100 (MQ=255)
ccccccccGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGGGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTa < 1:2546492/98‑1 (MQ=255)
cGCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTa < 1:1507452/100‑1 (MQ=255)
gCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAg > 1:147421/1‑100 (MQ=255)
gCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAg < 1:863573/100‑1 (MQ=255)
gCCCCCCGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAg < 1:12684/100‑1 (MQ=255)
ccccccGTCTGGTCTACACTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGc < 2:831924/100‑1 (MQ=255)
cccccGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCa < 2:2594014/100‑1 (MQ=255)
cccccGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCa < 1:2884342/100‑1 (MQ=255)
cGTCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCg < 1:185058/100‑1 (MQ=255)
gTCTGGTCTACATTTGGGGGGCTAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGc < 2:696642/100‑1 (MQ=255)
tCTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGAt < 1:825984/100‑1 (MQ=255)
cTGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATa > 1:1130059/1‑100 (MQ=255)
tGGTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaa > 2:2566849/1‑100 (MQ=255)
tgTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaaa < 2:2350943/99‑1 (MQ=255)
ggTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaaa > 2:1031640/1‑100 (MQ=255)
tagaccagacggggggCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAac < 2:2364759/90‑1 (MQ=255)
gTCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaaaa > 1:2350958/1‑99 (MQ=255)
tCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAaca < 2:284468/100‑1 (MQ=255)
tCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAaca > 2:2144027/1‑100 (MQ=255)
tCTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAaca > 1:2283338/1‑100 (MQ=255)
cTACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAacac < 1:2103012/100‑1 (MQ=255)
tACATTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAAcaca < 2:2594128/100‑1 (MQ=255)
aTTTGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTg < 1:1504200/100‑1 (MQ=255)
ttGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAAGACATTg < 2:2792354/98‑1 (MQ=255)
tGGGGGGCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTaa > 2:2310940/1‑100 (MQ=255)
ggggggCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAg < 2:1130055/100‑1 (MQ=255)
ggggggCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAg < 1:2254201/100‑1 (MQ=255)
ggggggCG‑‑AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAg < 1:1305096/100‑1 (MQ=255)
||
TTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAG > NC_000913/4200081‑4200272
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
