Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F228 I1 R1 66 128.3 6536509 94.2% 6157391 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,184,487 Δ1 bp intergenic (‑21/‑353) ribB ← / → yqiC 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/BMFP family putative fusogenic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,184,4840A.97.9% 634.5 / 4.9 145intergenic (‑18/‑356)ribB/yqiC3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/BMFP family putative fusogenic protein
Reads supporting (aligned to +/- strand):  ref base A (2/1);  new base . (69/73);  total (71/74)
Fisher's exact test for biased strand distribution p-value = 6.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.33e-01

Only 100 of 153 total aligned reads displayed.

TCCTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTAAAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTACTCTC  >  NC_000913/3184389‑3184579
                                                                                               |                                                                                               
tCCTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTaaatt                                                                                             <  1:1710033/100‑3 (MQ=255)
 ccTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTaaatta                                                                                            >  2:824337/1‑97 (MQ=255)
 ccTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTaaatta                                                                                            >  1:2702829/1‑97 (MQ=255)
  cTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTaaattat                                                                                           >  1:1476930/1‑96 (MQ=255)
  cTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTaaattat                                                                                           >  1:296523/1‑96 (MQ=255)
  attCACGCAGCGCAGCCAGTGCATTTTCAGCACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGTTTGATGGTAAAAAACCCTCACTaaattat                                                                                           >  2:346079/2‑96 (MQ=255)
   ttCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATAAAAAAAAAAAAAACCTCACT‑AAATTATg                                                                                         <  2:421707/100‑1 (MQ=255)
    tCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATgg                                                                                        <  2:1162180/100‑1 (MQ=255)
      aCGCAGCGCAGCAAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGAAAAAAAAAAAAAAAACCTCACTaaattat                                                                                           <  2:3139965/96‑5 (MQ=255)
         cagcgcagcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTAcc                                                                                   <  2:1633177/100‑1 (MQ=255)
          agcgcagcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCa                                                                                  >  1:1522830/1‑100 (MQ=255)
           gcgcagcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAg                                                                                 <  1:2830063/100‑1 (MQ=255)
           gcgcagcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAg                                                                                 <  2:190307/100‑1 (MQ=255)
               agcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATc                                                                             >  2:2636954/1‑100 (MQ=255)
               agcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATc                                                                             <  2:1424939/100‑1 (MQ=255)
                gcCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCa                                                                            >  1:3188518/1‑100 (MQ=255)
                  cAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAgg                                                                          <  1:3043791/100‑1 (MQ=255)
                   ngTGCATTTTAAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAggg                                                                         >  1:2915760/2‑100 (MQ=255)
                   aGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAggg                                                                         >  2:1317681/1‑100 (MQ=255)
                   aGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAggg                                                                         <  2:1228913/100‑1 (MQ=255)
                    gTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGc                                                                        <  1:2190147/100‑1 (MQ=255)
                    gTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGc                                                                        <  2:2373663/100‑1 (MQ=255)
                    gTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGc                                                                        <  1:1439037/100‑1 (MQ=255)
                      gCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCa                                                                       <  1:9336/99‑1 (MQ=255)
                      gCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAg                                                                      <  2:1522192/100‑1 (MQ=255)
                      gCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAg                                                                      >  1:643853/1‑100 (MQ=255)
                      gCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAg                                                                      <  2:2730409/100‑1 (MQ=255)
                       cATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGt                                                                     >  1:227840/1‑100 (MQ=255)
                       cATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGt                                                                     >  2:588036/1‑100 (MQ=255)
                          tttCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCtt                                                                  <  2:427063/100‑1 (MQ=255)
                           ttCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTa                                                                 <  2:2978312/100‑1 (MQ=255)
                              atcacGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAg                                                                <  2:2758036/96‑1 (MQ=255)
                              aaCACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATACAAGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGa                                                              <  2:1766276/100‑1 (MQ=255)
                               ncacGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAg                                                             >  2:1708530/2‑100 (MQ=255)
                               acacGTTCGAAAGGCGTACCAAAAGACGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAgg                                                               <  2:3178130/98‑1 (MQ=255)
                                cacGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGt                                                            <  1:2638504/100‑1 (MQ=255)
                                  cGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTAAAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTg                                                           <  2:514065/100‑1 (MQ=255)
                                  cGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTgg                                                          >  2:1532197/1‑100 (MQ=255)
                                  cGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTgg                                                          >  1:431369/1‑100 (MQ=255)
                                      cGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTggcggc                                                      >  2:3234035/1‑100 (MQ=255)
                                       gAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTggcggc                                                      >  2:1889844/1‑99 (MQ=255)
                                       gAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCa                                                     >  2:1760158/1‑100 (MQ=255)
                                       gAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCa                                                     >  2:838490/1‑100 (MQ=255)
                                       gAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGCTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCa                                                     >  2:294606/1‑100 (MQ=255)
                                        aaaGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCat                                                    >  2:2155952/1‑100 (MQ=255)
                                         aaGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCata                                                   <  2:239693/100‑1 (MQ=255)
                                         aaGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCata                                                   <  1:2980987/100‑1 (MQ=255)
                                          aGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCatat                                                  <  2:2526014/100‑1 (MQ=255)
                                           ggCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCatat                                                  >  1:2588215/1‑99 (MQ=255)
                                           ggCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCAtata                                                 >  2:639208/1‑100 (MQ=255)
                                           ggCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCAtata                                                 >  2:2073046/1‑100 (MQ=255)
                                            gCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAg                                                <  1:96560/100‑1 (MQ=255)
                                            gCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAg                                                >  2:1686988/1‑100 (MQ=255)
                                             cGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAg                                                <  1:214479/99‑1 (MQ=255)
                                             cGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGc                                               >  1:326403/1‑100 (MQ=255)
                                              gTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGcc                                              <  1:1212487/100‑1 (MQ=255)
                                               tACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCa                                             >  1:97329/1‑100 (MQ=255)
                                               tACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCa                                             <  2:2379770/100‑1 (MQ=255)
                                                 ccAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCaaa                                           >  1:173008/1‑100 (MQ=255)
                                                  cAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCaaaa                                          >  2:3032229/1‑100 (MQ=255)
                                                  cAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCaaaa                                          <  1:550872/100‑1 (MQ=255)
                                                   aaaaGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTAAAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCaaaa                                          >  1:2879928/1‑100 (MQ=255)
                                                   aaaaGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAAt                                         <  2:2778447/100‑1 (MQ=255)
                                                   aaaaGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAAt                                         <  2:45647/100‑1 (MQ=255)
                                                   aaaaGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAAt                                         <  2:45649/100‑1 (MQ=255)
                                                   aaaaGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAAt                                         >  1:2368567/1‑100 (MQ=255)
                                                    aaaGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATa                                        >  1:3265539/1‑100 (MQ=255)
                                                      agagGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAAc                                      <  1:858723/100‑1 (MQ=255)
                                                      agagGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAAc                                      <  1:2608505/100‑1 (MQ=255)
                                                       gagGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACg                                     >  1:77060/1‑100 (MQ=255)
                                                        agGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGt                                    <  1:1804305/100‑1 (MQ=255)
                                                                aGCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGt                            <  2:3185510/100‑1 (MQ=255)
                                                                 gCGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTc                           <  1:929843/100‑1 (MQ=255)
                                                                  cGTCTGATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTcc                          >  2:372040/1‑100 (MQ=255)
                                                                      tGATTCATGGTAAAAAAACCTCACTAAAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATg                       >  2:525798/1‑100 (MQ=255)
                                                                       gATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGcc                     >  2:1148695/1‑100 (MQ=255)
                                                                       gATTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGcc                     <  1:1520610/100‑1 (MQ=255)
                                                                        aTTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGccc                    >  2:2818710/1‑100 (MQ=255)
                                                                        aTTCATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGccc                    >  2:739668/1‑100 (MQ=255)
                                                                           cATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGAc                 >  1:113460/1‑100 (MQ=255)
                                                                           cATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGAc                 <  2:2588183/100‑1 (MQ=255)
                                                                           cATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGAc                 <  1:1060899/100‑1 (MQ=255)
                                                                           cATGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGAc                 >  1:1786229/1‑100 (MQ=255)
                                                                            aTGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGAAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACa                >  2:2714338/1‑100 (MQ=255)
                                                                             tGGTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAg               >  2:1529693/1‑100 (MQ=255)
                                                                               gTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGaa             >  2:883444/1‑100 (MQ=255)
                                                                               gTAAAAAAACCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGaa             >  2:2414422/1‑100 (MQ=255)
                                                                                 aaaaaaaCCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATc           >  2:1228755/1‑100 (MQ=255)
                                                                                 aaaaaaaCCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATc           >  1:1172966/1‑100 (MQ=255)
                                                                                  aaaaaaCCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCg          <  1:2155978/100‑1 (MQ=255)
                                                                                      aaCCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTAc      >  1:2576942/1‑100 (MQ=255)
                                                                                       aCCTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTAct     >  1:3065599/1‑100 (MQ=255)
                                                                                        ccTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTActc    >  2:2069782/1‑100 (MQ=255)
                                                                                        ccTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTActc    >  1:815701/1‑100 (MQ=255)
                                                                                        ccTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTActc    <  2:712934/100‑1 (MQ=255)
                                                                                        ccTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTActc    <  2:214879/100‑1 (MQ=255)
                                                                                        ccTCACT‑AAATGATGGGTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACTTGAGCGGGTCCATGCCCGACAGAATCGTTAct     <  1:2582488/99‑1 (MQ=255)
                                                                                         cTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCTAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGtt        <  2:2888960/95‑1 (MQ=255)
                                                                                         cTCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTActct   >  1:718907/1‑100 (MQ=255)
                                                                                          tCACT‑AAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTActctc  >  2:1624808/1‑100 (MQ=255)
                                                                                               |                                                                                               
TCCTTCACGCAGCGCAGCCAGTGCATTTTCAACACGTTCGAAAGGCGTACCAAAAGAGGAAAGTAGCGTCTGATTCATGGTAAAAAAACCTCACTAAAATTATGGTTACCAGAATCAGGGCAGTCTTAGGAGTGGCGGCATATAGCCAAAATAACGTGAGCGGGTCCATGCCCGACAGAATCGTTACTCTC  >  NC_000913/3184389‑3184579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A