Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F200 I1 R1
|
100 |
75.0 |
3643689 |
96.7% |
3523447 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
436,026 |
G→A |
T131T (ACG→ACA) |
thiL → |
thiamine monophosphate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 436,026 | 0 | G | A | 100.0%
| 207.9
/ NA
| 60 | T131T (ACG→ACA) | thiL | thiamine monophosphate kinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (26/34); total (26/34) |
GCTTGAGTCCTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACGTTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCGGGC > NC_000913/435930‑436119
|
gCTTGAGTCCTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTg < 2:1020363/100‑1 (MQ=255)
ttGAGTCCTTCAGCGACAGTTTGTTTGATCTTCTTAATTATTACGATATGCAACCCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTggg < 2:1542229/100‑1 (MQ=255)
ttGAGTCCTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTggg < 1:893421/100‑1 (MQ=255)
tCCTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATcc < 1:1337181/100‑1 (MQ=255)
ccTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCa > 2:533132/1‑100 (MQ=255)
cTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCAc > 2:174869/1‑100 (MQ=255)
cAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGc < 2:225548/100‑1 (MQ=255)
aGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCt > 1:1655953/1‑100 (MQ=255)
cAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGtt > 2:322796/1‑100 (MQ=255)
gtttgtttGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCTCGCGTGAGCCATTATCAATGACATTGGGTATACACGGATTTGtt > 2:560876/1‑98 (MQ=255)
gtttgtttGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTcc < 2:613520/100‑1 (MQ=255)
gtttgtttGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTcc < 1:655860/100‑1 (MQ=255)
gtttgATCTTCTCAATTATTACGATATGCAACTCAGTGGCGGCGATACCACGCGTGGGCCATTATCAATGACAGTGGGTATCCACGGCTTTGTTCCGATg < 2:984274/100‑1 (MQ=255)
tttgATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATg < 2:277408/99‑1 (MQ=255)
tgtgATCTATTCAATTATTACGATATGTATTTTATTAGCGGCGATACCACGCGTGGACGATTATCATTGACATTGTGTATCCACGTCATTTTTCCAATgg < 1:121709/98‑1 (MQ=255)
tgATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGa < 1:836200/100‑1 (MQ=255)
tctcAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGcc > 1:1223734/1‑100 (MQ=255)
tctcAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGcc < 1:1414130/100‑1 (MQ=255)
ctcAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCt > 2:1506051/1‑100 (MQ=255)
cAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTa > 2:448761/1‑100 (MQ=255)
cAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTa > 1:746434/1‑100 (MQ=255)
ttatttCGTTATGCAATTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAAcg < 2:1121598/100‑1 (MQ=255)
ttattaCGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAAcg < 1:533128/100‑1 (MQ=255)
ttattaCGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAAcg < 2:1241239/100‑1 (MQ=255)
tattaCGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAAcgc > 1:1654667/1‑100 (MQ=255)
attaCGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAAcgcg > 2:226355/1‑100 (MQ=255)
taCGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGAGct > 1:1748966/1‑100 (MQ=255)
tatGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTggg < 1:1016064/100‑1 (MQ=255)
gCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCg < 1:322794/100‑1 (MQ=255)
cAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGa > 2:1398121/1‑100 (MQ=255)
aCTCATTGGTGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGaaa > 1:931683/1‑100 (MQ=255)
aCTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGaaa > 2:797327/1‑100 (MQ=255)
cTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAAc < 1:1389629/100‑1 (MQ=255)
cTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAAc > 1:1585192/1‑100 (MQ=255)
cATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCg < 2:1342747/100‑1 (MQ=255)
aTTGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCgg < 2:1654678/100‑1 (MQ=255)
tGGCGGCGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGt < 2:820456/100‑1 (MQ=255)
ggcggcGATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTg > 1:454009/1‑100 (MQ=255)
cgATACCACGCGTGGGCTATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTgg < 1:140563/100‑1 (MQ=255)
gATACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGa < 1:746856/100‑1 (MQ=255)
aTACCACGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGAt > 2:650598/1‑100 (MQ=255)
aCGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTAtg < 2:1081108/100‑1 (MQ=255)
aCGCGTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTAtg < 2:746438/100‑1 (MQ=255)
cgtgTGGGACATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTTACTGGATCTAtg < 2:1194809/96‑1 (MQ=255)
gcgTGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGTGCTCTGGGGCGAAACCGGGTGACTGGATCTAtgtg > 2:1053975/1‑100 (MQ=255)
cgTGGGCCATTATCAATGACATTGGGTATCAACGGCTTTGTTCCGATAGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGa > 1:581617/1‑100 (MQ=255)
tGGGCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGAcc < 1:307840/100‑1 (MQ=255)
gggCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCg < 2:1424590/100‑1 (MQ=255)
ggCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCgg < 2:1382598/100‑1 (MQ=255)
ggCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCgg > 1:823847/1‑100 (MQ=255)
gCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGt > 2:316136/1‑100 (MQ=255)
gCCATTATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGt > 2:1131247/1‑100 (MQ=255)
tATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACAcc < 2:1318204/100‑1 (MQ=255)
tATCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACAcc < 2:1300596/100‑1 (MQ=255)
aTCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCg > 1:1218372/1‑100 (MQ=255)
aTCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCg < 1:1702599/100‑1 (MQ=255)
tCAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCgg < 1:1683695/100‑1 (MQ=255)
cAATGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCggg > 2:723223/1‑100 (MQ=255)
aaTGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCGGGc > 2:431937/1‑100 (MQ=255)
aaTGACATTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCGGGc < 2:282753/100‑1 (MQ=255)
|
GCTTGAGTCCTTCAGCGACAGTTTGTTTGATCTTCTCAATTATTACGATATGCAACTCATTGGCGGCGATACCACGCGTGGGCCATTATCAATGACGTTGGGTATCCACGGCTTTGTTCCGATGGGACGAGCCTTAACGCGCTCTGGGGCGAAACCGGGTGACTGGATCTATGTGACCGGTACACCGGGC > NC_000913/435930‑436119
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
