Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,971 |
C→A |
23.0% |
intergenic (‑181/+127) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,971 | 0 | C | A | 23.0%
| 632.9
/ 167.6
| 260 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (101/97); new base A (51/9); total (152/108) |
| Fisher's exact test for biased strand distribution p-value = 1.27e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.69e-01 |
Only 100 of 276 total aligned reads displayed.
AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705872‑3706070
|
aGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgc < 1:40734/100‑1 (MQ=255)
gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg < 2:939433/100‑1 (MQ=255)
gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:2047096/1‑100 (MQ=255)
ggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg > 1:4027725/1‑100 (MQ=255)
gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc < 2:1722038/100‑1 (MQ=255)
gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc > 2:2718919/1‑100 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 1:2796947/1‑100 (MQ=255)
gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 2:3772715/1‑100 (MQ=255)
gAAGTATTACTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa > 2:614698/1‑100 (MQ=255)
aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 1:3458102/1‑100 (MQ=255)
aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc > 2:214347/1‑100 (MQ=255)
tATTGCTGCCGCATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGc < 2:1990355/100‑1 (MQ=37)
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:173194/99‑1 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:3879637/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGAGGCGTTAACGCCTTa > 2:4205702/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2252936/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:1922185/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:725844/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3463314/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 1:1128012/100‑1 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGACGGATGCGGCGCTAACGCCTTAt > 1:815827/1‑98 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:189310/100‑1 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:1318253/99‑1 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 2:2285025/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc > 1:2900690/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:3968923/100‑2 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:557144/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:4047473/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:2829508/100‑3 (MQ=37)
tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a > 2:1686129/1‑100 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGTGTTAACGCCTTATCCGGCCT‑‑Ac < 2:1106875/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 2:3414368/100‑1 (MQ=255)
cgttGCACGCAGAGGTACAGCGCCCCCGGGTATATAGATTGTTGTCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 1:3858042/96‑1 (MQ=21)
cgcTGTTCGCAGAGGCACAGCGCTACCGGGTATACAGATTGGTGACAAAGTGCGCTTTGTTTATTCCGGATAAGGCGTTATCGCCGCATCCGGCAT‑‑aaac < 1:1002361/100‑4 (MQ=21)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1877786/1‑100 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 2:1767500/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg > 2:2511361/1‑100 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 1:553713/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg > 2:3558195/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:147500/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:30512/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGACT‑‑AC‑AAAATCGTGCa < 2:2504511/100‑1 (MQ=255)
gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCaaa > 1:928784/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑tt > 1:2217753/1‑100 (MQ=255)
cacgGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCa > 2:1513226/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCa > 2:2106436/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAAt > 2:318890/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAAt < 2:1035893/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAAt < 1:2854196/100‑1 (MQ=255)
aGCGCCACCGGGTCTACAGATTGTTGACAAAGTGCGCCTTGTTTATACCAGATTCGGCGTTCACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTTAATa > 1:462295/1‑100 (MQ=17)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACAtt > 1:1640697/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTg < 2:2369967/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑g < 1:3031665/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑g < 1:3330410/100‑1 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAAt > 1:3634956/1‑100 (MQ=255)
caatcAGATTGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCT‑‑AC‑AAAGTCGTATAAACTGCAATACATTgaattta < 1:2977455/96‑7 (MQ=17)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑g < 2:2217759/100‑1 (MQ=255)
gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAg > 2:2848951/7‑99 (MQ=17)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGcc > 1:727115/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTg < 1:2007268/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTg < 2:1370459/99‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATa < 1:1218830/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATa < 2:67276/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATa > 2:3252168/1‑100 (MQ=255)
tGCGCGTTGTTTATGCCGGATTCGGAGTTATCGGCTTATCTGGCCT‑‑AC‑AAAATCGTGCAAA‑CTCAAGACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCgg < 1:2624705/100‑1 (MQ=18)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGa > 1:641080/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1567754/100‑1 (MQ=255)
cTTTGTTTCTGCCGGATGCTGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GCATTTTC‑‑GTAGGCCTGATAAGTGGAgc < 1:2049830/99‑1 (MQ=17)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:1531116/100‑1 (MQ=255)
nctttgtaggCCGGATAAGGCGTTAACGCCGCATCAGGCATTAAC‑AAAGTCCTGCAGA‑TTCAATATATTG‑CA‑GGTACTGC‑‑GTAGGCCTGATAAGCGTAgc > 1:3130058/10‑100 (MQ=9)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:3805391/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa > 2:3497768/1‑100 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt < 2:2900702/100‑1 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:1600225/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCT‑‑AC‑AAGAACGTGCAAA‑TTCAACAAATTGTGATGCATCCT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:115490/6‑100 (MQ=21)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:280641/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAACCGCGCAAA‑TTCAATATATTG‑CG‑GAGAAAAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:3956919/5‑100 (MQ=18)
taggCCGGATAAGGCGTTTACGCCGCATCTGGCCT‑‑AC‑AAATTCTTCCAAA‑TTCAATATATTG‑CA‑GAAATCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:289032/4‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAA‑TTCAATATATTG‑TG‑GGCTCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1948027/4‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAA‑TTCAATAGATTG‑CA‑GAGATTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3130402/4‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATAGATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:2997110/1‑100 (MQ=255)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:184129/1‑100 (MQ=255)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:2558163/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCACCCGGCCT‑‑AC‑AAAAGCATGCAAA‑TTCAATATATTG‑CA‑GAGTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2596725/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAA‑TTCAATATATTG‑CA‑GGACCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:384718/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTGTGCAAA‑TTCAATATATTG‑CA‑GGAAACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 2:504554/3‑100 (MQ=18)
aggCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:3035489/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:1432903/100‑1 (MQ=255)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:2339764/100‑1 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑TC‑AAAAGCATGCAAA‑TTCAATATATTG‑CA‑GAGTTCAC‑‑ATAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2569422/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAA‑TTCAATATATTG‑TG‑GGCTCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1959008/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAA‑TTCAATATATTG‑C‑‑‑AATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2640927/2‑100 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3434330/1‑99 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:3743114/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:4083402/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAA‑TTCAATATATTG‑CA‑GAAACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2704278/1‑99 (MQ=18)
ggATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:3306813/1‑100 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg > 1:1841852/1‑100 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2425261/1‑100 (MQ=255)
cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATACGCGGAGCGCATCAGGCATTtttgcct < 2:2605978/100‑1 (MQ=255)
|
AGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAA‑TTCAATACATTG‑CA‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705872‑3706070
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
