breseq  version 0.29.0  revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 36,231 T→C 100% intergenic (‑69/+40) caiD ← / ← caiC carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase
RA 162,973 G→A 100% C290Y (TGT→TAT)  hrpB → putative ATP‑dependent helicase
RA 171,343 G→A 38.2% A257T (GCC→ACC)  fhuD → iron(3+)‑hydroxamate import ABC transporter periplasmic binding protein
JC 190,553 Δ14 bp 100% coding (680‑693/726 nt) rpsB → 30S ribosomal subunit protein S2
RA 194,506 A→T 35.7% Q329L (CAG→CTG)  dxr → 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
RA 216,568 C→T 100% A146T (GCC→ACC)  yaeF ← putative lipoprotein
RA 235,082 A→G 47.0% K89K (AAA→AAG)  yafS → putative S‑adenosyl‑L‑methionine‑dependent methyltransferase
RA 236,541 C→T 100% R159* (CGA→TGA)  dnaQ → DNA polymerase III epsilon subunit
RA 247,107 G→A 49.3% K132K (AAG→AAA)  yafL → putative lipoprotein and C40 family peptidase
RA 252,589 G→C 15.5% A97P (GCA→CCA)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 252,594 G→C 15.4% W98C (TGG→TGC)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 350,119 T→G 49.9% G36G (GGT→GGG)  prpC → 2‑methylcitrate synthase
RA 356,492 A→G 46.8% T108A (ACG→GCG)  codA → cytosine/isoguanine deaminase
RA 358,599 G→A 45.5% A31V (GCG→GTG)  cynR ← transcriptional activator of cyn operon; autorepressor
RA 428,188 G→T 100% R181L (CGC→CTC)  secD → SecYEG protein translocase auxillary subunit
RA 474,643 G→T 48.7% V173V (GTC→GTA)  tesB ← acyl‑CoA thioesterase 2
RA 475,614 A→G 44.8% D79G (GAT→GGT)  ybaY → outer membrane lipoprotein
RA 481,968 A→G 43.1% G812G (GGT→GGC)  acrB ← multidrug efflux system protein
RA 488,815 G→A 44.0% A760A (GCG→GCA)  mscK → mechanosensitive channel protein, intermediate conductance, K+ regulated
RA 497,139:1 (T)5→6 100% intergenic (+145/‑36) htpG → / → adk protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase
RA 520,993 T→G 100% V193G (GTC→GGC)  ybbP → putative ABC transporter permease
RA 531,655 C→A 31.7% A189A (GCG→GCT)  allS ← allD operon transcriptional activator
RA 545,486 A→C 42.2% I293S (ATT→AGT)  allD ← ureidoglycolate dehydrogenase
RA 556,721 G→T 47.5% C51* (TGC→TGA)  ybcJ ← ribosome‑associated protein; putative RNA‑binding protein
RA 568,685 T→A 16.4% intergenic (+38/‑217) emrE → / → ybcK DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA 568,690 T→A 15.4% intergenic (+43/‑212) emrE → / → ybcK DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA 568,691 T→A 15.4% intergenic (+44/‑211) emrE → / → ybcK DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA 568,696 T→A 15.4% intergenic (+49/‑206) emrE → / → ybcK DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase
RA 569,160 G→T 17.6% D87Y (GAC→TAC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 569,161 A→C 16.4% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 606,299 A→T 50.7% V362E (GTG→GAG)  ybdK ← weak gamma‑glutamyl:cysteine ligase
RA 635,261 A→G 47.9% V39A (GTT→GCT)  ybdM ← Spo0J family protein, ParB‑like nuclease domain
RA 681,705 C→T 15.7% intergenic (+42/+18) djlC → / ← hscC J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor
RA 700,805 A→T 100% C264S (TGC→AGC)  nagC ← N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
RA 720,946 C→T 100% intergenic (+106/+110) ybfK → / ← kdpE uncharacterized protein/response regulator in two‑component regulatory system with KdpD
RA 756,886 T→A 55.9% L327Q (CTG→CAG)  sdhA → succinate dehydrogenase, flavoprotein subunit
RA 772,209 C→A 100% T251N (ACC→AAC)  cydA → cytochrome d terminal oxidase, subunit I
RA 833,889 C→T 34.4% L274L (CTA→TTA)  dinG → ATP‑dependent DNA helicase
RA 850,698 C→A 29.4% N83K (AAC→AAA)  ompX → outer membrane protein X
RA 850,995 T→G 15.1% intergenic (+30/+19) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 882,722 G→A 100% R5C (CGC→TGC)  deoR ← deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx
RA 882,856 C→A 47.7% R178L (CGT→CTT)  ybjG ← undecaprenyl pyrophosphate phosphatase
RA 894,155 T→G 100% D124E (GAT→GAG)  potF → putrescine ABC transporter periplasmic binding protein
RA 963,971 C→A 43.0% F48L (TTC→TTA)  ihfB → integration host factor (IHF), DNA‑binding protein, beta subunit
RA 1,022,600 C→T 40.1% Q428Q (CAG→CAA)  yccS ← putative transporter, FUSC superfamily inner membrane protein
RA 1,023,771 A→T 47.6% V38E (GTA→GAA)  yccS ← putative transporter, FUSC superfamily inner membrane protein
RA 1,034,751 Δ1 bp 37.0% coding (1498/1794 nt) hyaB → hydrogenase 1, large subunit
RA 1,070,115 C→A 31.0% P80P (CCG→CCT)  rutF ← flavin:NADH reductase
RA 1,075,612 C→T 54.1% E1091K (GAA→AAA)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,079,672 G→A 57.8% R123H (CGC→CAC)  putP → proline:sodium symporter
RA 1,087,715 C→T 46.9% M44I (ATG→ATA)  pgaC ← biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase
RA 1,100,233 G→A 100% intergenic (+39/‑63) ycdY → / → ycdZ redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein
RA 1,117,238 G→A 44.2% M144I (ATG→ATA)  yceA → putative rhodanese‑related sulfurtransferase
RA 1,125,966 C→A 46.5% T135T (ACC→ACA)  rimJ → ribosomal‑protein‑S5‑alanine N‑acetyltransferase
RA 1,128,973 G→A 23.0% D379N (GAC→AAC)  murJ → putative lipid II flippase
RA 1,143,125 C→T 100% D415N (GAC→AAC)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,193,289 T→A 54.8% Q162L (CAG→CTG)  mnmA ← tRNA(Gln,Lys,Glu) U34 2‑thiouridylase
RA 1,197,739 A→G 100% S167P (TCC→CCC)  ymfE ← e14 prophage; putative inner membrane protein
RA 1,224,157 A→G 40.8% intergenic (+250/+122) ycgI → / ← minE pseudogene/cell division topological specificity factor
RA 1,232,481 C→T 15.0% intergenic (+27/+19) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,282,840 G→T 53.5% E993* (GAG→TAG)  narG → nitrate reductase 1, alpha subunit
RA 1,292,944 T→C 100% intergenic (‑22/‑583) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
RA 1,315,705 T→C 49.6% K22K (AAA→AAG)  yciF ← putative rubrerythrin/ferritin‑like metal‑binding protein
RA 1,340,547 A→G 36.4% E102G (GAA→GGA)  yciS → DUF1049 family inner membrane protein, function unknown
RA 1,344,033 A→G 17.1% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 17.0% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 16.8% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,368,184 A→T 30.9% M36L (ATG→TTG)  pspA → regulatory protein for phage‑shock‑protein operon
RA 1,401,844 A→G 100% I471T (ATC→ACC)  abgB ← p‑aminobenzoyl‑glutamate hydrolase, B subunit
RA 1,406,098 C→T 15.5% D40D (GAC→GAT)  smrA → DNA endonuclease
RA 1,413,709 T→C 55.3% E11G (GAA→GGA)  ydaC ← DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein
RA 1,426,178 A→T 15.8% intergenic (+96/‑276) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,434,459 C→T 81.1% intergenic (‑235/+499) ynaE ← / ← ttcC cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
RA 1,460,438 T→C 46.5% L462S (TTG→TCG)  paaH → 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent
RA 1,482,222 A→T 15.1% intergenic (+21/+33) ynbD → / ← azoR putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent
RA 1,482,224 T→G 15.5% intergenic (+23/+31) ynbD → / ← azoR putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent
RA 1,482,227 C→A 15.4% intergenic (+26/+28) ynbD → / ← azoR putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent
RA 1,482,229 A→T 16.2% intergenic (+28/+26) ynbD → / ← azoR putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent
RA 1,501,912 T→A 100% I117I (ATT→ATA)  tehB → tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein
RA 1,515,267 A→T 34.8% D169V (GAT→GTT)  ydcV → putative ABC transporter permease
RA 1,519,159 A→T 61.2% T45S (ACA→TCA)  curA → curcumin/dihydrocurcumin reductase, NADPH‑dependent
RA 1,530,076:1 (A)7→8 100% coding (155/483 nt) ydcD → putative immunity protein for RhsE
RA 1,533,713 A→C 15.1% F47V (TTT→GTT)  yddH ← flavin reductase like‑protein
RA 1,564,601 A→G 40.1% F378S (TTT→TCT)  dosP ← oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator
RA 1,580,094 C→T 100% D233N (GAT→AAT)  ydeM ← putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,580,128 A→G 56.5% F221F (TTT→TTC)  ydeM ← putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,584,031 A→G 31.5% intergenic (‑72/+176) safA ← / ← ydeP two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase
RA 1,586,311 T→A 42.8% H59L (CAC→CTC)  ydeP ← putative oxidoreductase
RA 1,602,188 T→C 42.8% I233I (ATT→ATC)  lsrA → autoinducer 2 import ATP‑binding protein
RA 1,652,242 T→G 41.8% pseudogene (692/1158 nt) intQ → pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related
RA 1,665,195:1 (T)7→8 100% intergenic (+75/‑120) dmsD → / → clcB twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter
RA 1,681,932 T→C 100% P33P (CCA→CCG)  ydgC ← GlpM family inner membrane protein
RA 1,688,184 G→T 43.6% A65E (GCG→GAG)  fumA ← fumarate hydratase (fumarase A), aerobic Class I
RA 1,712,306:1 (T)7→8 100% intergenic (+148/‑463) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,712,518 (C)6→5 100% intergenic (+360/‑251) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,715,953 T→C 53.9% K424E (AAA→GAA)  tyrS ← tyrosyl‑tRNA synthetase
RA 1,720,629 T→C 38.1% T66A (ACT→GCT)  slyA ← global transcriptional regulator
RA 1,720,828 C→T 53.8% intergenic (‑4/‑197) slyA ← / → ydhI global transcriptional regulator/DUF1656 family putative inner membrane efflux pump associated protein
RA 1,728,444 C→A 100% T33N (ACC→AAC)  rnt → RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair
RA 1,806,158 T→C 35.6% intergenic (‑75/‑212) ydiY ← / → pfkB acid‑inducible putative outer membrane protein/6‑phosphofructokinase II
RA 1,808,281 (A)5→4 100% coding (486/861 nt) yniA → fructosamine kinase family protein
RA 1,809,610 A→G 42.3% E77E (GAA→GAG)  yniC → 2‑deoxyglucose‑6‑P phosphatase
RA 1,827,031 T→A 100% D410V (GAT→GTT)  astB ← succinylarginine dihydrolase
RA 1,835,227 T→C 39.4% F140F (TTT→TTC)  ydjZ → TVP38/TMEM64 family inner membrane protein
RA 1,841,079 C→A 36.2% A109S (GCG→TCG)  ynjF ← CDP‑alcohol phosphatidyltransferase family inner membrane protein
RA 1,856,333 T→G 15.9% E199A (GAG→GCG)  ydjH ← putative kinase
RA 1,864,758 G→A 15.6% intergenic (+24/+24) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,864,763 A→T 15.8% intergenic (+29/+19) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,868,859 Δ1 bp 15.9% intergenic (+17/‑96) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,870,983 C→T 36.9% A200V (GCG→GTG)  yeaI → putative membrane‑anchored diguanylate cyclase
RA 1,913,273 T→C 41.3% N515S (AAC→AGC)  prc ← carboxy‑terminal protease for penicillin‑binding protein 3
RA 1,925,214 T→C 43.2% I36T (ATC→ACC)  holE → DNA polymerase III, theta subunit
RA 1,946,955 G→A 49.8% A141V (GCC→GTC)  ruvC ← component of RuvABC resolvasome, endonuclease
RA 1,983,761 C→T 100% E437K (GAA→AAA)  araG ← L‑arabinose ABC transporter ATPase
RA 1,985,112 C→G 15.3% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 2,014,867 A→G 44.5% I547V (ATA→GTA)  fliF → flagellar basal‑body MS‑ring and collar protein
RA 2,019,158 G→A 43.6% S258N (AGT→AAT)  fliK → flagellar hook‑length control protein
RA 2,033,458 T→G 51.7% I9I (ATA→ATC)  yedR ← inner membrane protein
RA 2,036,066 A→C 40.9% T78P (ACG→CCG)  hchA → glyoxalase III and Hsp31 molecular chaperone
RA 2,071,321 A→G 100% intergenic (+110/‑218) yeeP → / → flu pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
RA 2,162,174 A→T 39.8% A237A (GCA→GCT)  iceT → putative citrate/iron‑citrate/zinc‑citrate efflux transporter
RA 2,173,363 Δ2 bp 100% intergenic (‑1/+1) gatC ← / ← gatC pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,181,824 A→G 42.0% A243A (GCA→GCG)  yegV → putative kinase
RA 2,191,432 C→T 100% G72S (GGC→AGC)  yehC ← putative periplasmic pilin chaperone
RA 2,210,811 C→T 100% pseudogene (1712/2001 nt) yehQ → pseudogene
RA 2,221,689 G→A 45.3% R101C (CGC→TGC)  bglX ← beta‑D‑glucoside glucohydrolase, periplasmic
RA 2,229,392 A→G 41.1% intergenic (+327/+46) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,255,991 A→T 18.7% K213* (AAA→TAA) ‡ yeiL → putative transcriptional regulator
RA 2,255,992 A→T 18.6% K213I (AAA→ATA) ‡ yeiL → putative transcriptional regulator
RA 2,269,044 T→C 40.0% F64S (TTC→TCC)  lpxT → lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase
RA 2,278,298 C→T 100% intergenic (‑61/+272) yejG ← / ← bcr uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter
RA 2,281,279 A→T 55.0% A216A (GCA→GCT)  yejH → putative ATP‑dependent DNA or RNA helicase
RA 2,365,836 T→C 42.9% intergenic (‑216/‑92) ais ← / → arnB putative LPS core heptose(II)‑phosphate phosphatase/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent
RA 2,379,796 C→T 43.9% R283H (CGC→CAC)  menF ← isochorismate synthase 2
RA 2,436,937 A→T 100% D305E (GAT→GAA)  pdxB ← erythronate‑4‑phosphate dehydrogenase
RA 2,469,656:1 (T)7→8 100% coding (526/1332 nt) gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
RA 2,474,878 T→C 15.8% intergenic (+22/‑106) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,474,881 G→A 16.1% intergenic (+25/‑103) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,485,264 G→A 47.6% W297* (TGG→TGA)  evgS → hybrid sensory histidine kinase in two‑component regulatory system with EvgA
RA 2,501,197 A→C 46.3% N23T (AAC→ACC)  ypdC → putative DNA‑binding protein
RA 2,509,578 C→T 41.9% intergenic (‑152/‑52) glk ← / → yfeO glucokinase/putative ion channel protein
RA 2,518,507 G→A 44.7% R14H (CGC→CAC)  yfeC → DUF1323 family putative DNA‑binding protein
RA 2,521,967 C→A 100% A171S (GCG→TCG)  xapR ← transcriptional activator of xapAB
RA 2,563,518:1 (A)5→6 100% intergenic (+401/‑74) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,564,525 G→A 100% M1M (ATG→ATA) † yffS → CPZ‑55 prophage; uncharacterized protein
RA 2,567,608 Δ1 bp 39.6% coding (500/1227 nt) eutH ← ethanolamine transporter
RA 2,597,891 A→T 38.4% T325T (ACT→ACA)  bamC ← BamABCDE complex OM biogenesis lipoprotein
RA 2,600,288 C→T 100% S128L (TCG→TTG)  gcvR → transcriptional repressor, regulatory protein accessory to GcvA
RA 2,671,759 C→A 35.7% R179R (CGG→AGG)  hcaB → 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase
RA 2,682,158 T→C 42.7% K196K (AAA→AAG)  yphG ← DUF4380 domain‑containing TPR repeat protein
RA 2,751,923 T→C 42.3% G43G (GGT→GGC)  recN → recombination and repair protein
RA 2,767,667 T→G 15.1% intergenic (+312/‑43) rnlB → / → yfjP CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
RA 2,767,670 C→A 15.1% intergenic (+315/‑40) rnlB → / → yfjP CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
RA 2,810,756 G→A 100% intergenic (+77/‑14) ygaH → / → mprA putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,758 G→A 100% intergenic (+79/‑12) ygaH → / → mprA putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,872 C→T 15.9% H35Y (CAC→TAC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,873 A→G 16.1% H35R (CAC→CGC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,817,931 T→C 47.8% intergenic (‑71/+128) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,827,362 A→G 46.4% M1M (ATG→GTG) † srlB → glucitol/sorbitol‑specific enzyme IIA component of PTS
RA 2,852,356 T→A 100% L74Q (CTG→CAG)  hypD → hydrogenase maturation protein
RA 2,887,352 T→A 100% intergenic (‑133/+226) ygcB ← / ← cysH Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent
RA 2,897,501 C→A 16.6% D124Y (GAT→TAT)  ygcS ← putative MFS sugar transporter; membrane protein
RA 2,966,637 A→G 39.0% S600P (TCA→CCA)  ptsP ← PEP‑protein phosphotransferase enzyme I; GAF domain containing protein
RA 2,980,746 C→T 15.6% intergenic (‑111/+18) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,981,031 G→T 37.1% C384* (TGC→TGA)  araE ← arabinose transporter
RA 2,989,323 (A)8→7 100% coding (20/483 nt) yqeJ → uncharacterized protein
RA 2,993,889 T→A 19.2% intergenic (+33/‑50) ygeI → / → pbl uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family
RA 3,016,405 C→T 43.1% L116F (CTT→TTT)  ygfK → putative Fe‑S subunit oxidoreductase subunit
RA 3,134,852 A→G 53.8% intergenic (+29/+20) yghT → / ← pitB putative ATP‑binding protein/phosphate transporter
RA 3,171,863 A→G 15.3% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,195,102 G→A 40.4% intergenic (+277/‑39) ibsD → / → ibsE toxic membrane protein/toxic membrane protein
RA 3,244,987 C→T 52.2% intergenic (‑246/‑237) uxaC ← / → exuT uronate isomerase/hexuronate transporter
RA 3,267,608 C→T 18.0% intergenic (+10/‑246) tdcR → / → yhaB L‑threonine dehydratase operon activator protein/uncharacterized protein
RA 3,360,916 (A)6→5 100% intergenic (+300/‑260) gltD → / → gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA 3,379,744 G→T 44.3% T85N (ACC→AAC)  zapE ← divisome ATPase
RA 3,410,196 T→A 24.5% intergenic (+245/‑84) prmA → / → dusB methyltransferase for 50S ribosomal subunit protein L11/tRNA‑dihydrouridine synthase B
RA 3,410,649 A→G 52.8% I124V (ATC→GTC)  dusB → tRNA‑dihydrouridine synthase B
RA 3,427,065:1 +A 100% intergenic (‑32/+11) alaU ← / ← ileU tRNA‑Ala/tRNA‑Ile
RA 3,427,068 Δ1 bp 100% intergenic (‑35/+8) alaU ← / ← ileU tRNA‑Ala/tRNA‑Ile
RA 3,452,057 A→T 100% I77N (ATC→AAC)  rplD ← 50S ribosomal subunit protein L4
RA 3,466,858 G→C 52.6% A45G (GCC→GGC)  bfd ← bacterioferritin‑associated ferredoxin
RA 3,471,357 C→T 16.3% intergenic (‑28/+43) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,471,361 T→G 15.9% intergenic (‑32/+39) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,471,362 C→A 15.6% intergenic (‑33/+38) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,490,088 A→G 54.2% G31G (GGT→GGC)  argD ← bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
RA 3,542,123 G→T 31.6% G573C (GGC→TGC)  feoB → ferrous iron transporter protein B and GTP‑binding protein; membrane protein
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,574,062 A→T 49.0% C273S (TGC→AGC)  asd ← aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding
RA 3,582,272 G→A 52.7% C137Y (TGT→TAT)  yhhZ → putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity
RA 3,594,073 G→T 51.2% T45N (ACC→AAC)  livG ← branched‑chain amino acid ABC transporter ATPase
RA 3,622,796 T→G 100% L1202R (CTG→CGG)  rhsB → Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
RA 3,636,979 A→T 47.8% D144E (GAT→GAA)  yhiN ← putative oxidoreductase
RA 3,648,042 T→C 100% intergenic (‑254/‑486) dinQ ← / → arsR UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor
RA 3,651,556 C→T 37.4% pseudogene (266/741 nt) yhiS → pseudogene
RA 3,658,780 A→G 40.4% T139A (ACG→GCG)  gadE → gad regulon transcriptional activator
RA 3,678,937 T→A 56.3% Q84L (CAG→CTG)  yhjH ← cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated
RA 3,701,868 C→A 40.6% R334L (CGT→CTT)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,704,719 G→T 52.7% P15T (CCG→ACG)  dppC ← dipeptide/heme ABC transporter permease
RA 3,705,970 G→A 22.4% intergenic (‑180/+128) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,971 C→A 23.0% intergenic (‑181/+127) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,978 A→C 22.6% intergenic (‑188/+120) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,984 T→G 30.3% intergenic (‑194/+114) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,705,985 T→C 30.3% intergenic (‑195/+113) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,706,017 C→T 24.3% intergenic (‑227/+81) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,706,048 G→T 27.0% intergenic (‑258/+50) dppB ← / ← dppA dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
RA 3,707,989 A→G 43.6% intergenic (‑284/+627) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,795,591 G→A 58.6% S221S (TCG→TCA)  waaF → ADP‑heptose:LPS heptosyltransferase II
RA 3,802,190 T→C 38.3% K290R (AAA→AGA)  waaO ← UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
RA 3,822,089 T→A 26.8% intergenic (+38/‑17) gmk → / → rpoZ guanylate kinase/RNA polymerase, omega subunit
RA 3,828,954 T→C 44.2% S4P (TCC→CCC)  xanP → xanthine permease
RA 3,853,909 A→G 100% intergenic (+267/‑13) tisB → / → emrD toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein
RA 3,910,662 A→T 100% D288E (GAT→GAA)  pstS ← phosphate ABC transporter periplasmic binding protein
RA 3,950,468 G→T 100% intergenic (+48/‑39) ilvL → / → ilvX ilvG operon leader peptide/uncharacterized protein
RA 3,965,149 A→T 44.8% V161E (GTG→GAG)  rhlB ← ATP‑dependent RNA helicase
RA 3,971,690 A→C 100% Q144P (CAG→CCG)  wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
RA 4,004,515 G→C 100% G61G (GGC→GGG)  yigI ← 4HBT thioesterase family protein
RA 4,105,396 A→T 58.0% L92Q (CTG→CAG)  cpxR ← response regulator in two‑component regulatory system with CpxA
RA 4,126,903 G→A 16.7% intergenic (‑93/‑110) priA ← / → rpmE Primosome factor n' (replication factor Y)/50S ribosomal subunit protein L31
RA 4,137,180 C→G 44.2% A160P (GCA→CCA)  yijF ← DUF1287 family protein
RA 4,168,540 T→A 100% intergenic (+93/‑101) gltT → / → rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
RA 4,186,296 T→G 19.2% I316S (ATC→AGC)  rpoC → RNA polymerase, beta prime subunit
RA 4,214,371 A→T 49.5% Q31L (CAG→CTG)  metA → homoserine O‑transsuccinylase
RA 4,235,689:1 +A 100% intergenic (+282/‑217) pgi → / → yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
MC JC 4,242,942 Δ66 bp 100% coding (510‑575/891 nt) malG ← maltose transporter subunit
RA 4,261,155 A→T 48.2% D186V (GAT→GTT)  yjbM → uncharacterized protein
RA 4,261,358 T→A 15.6% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,261,359 T→A 15.6% intergenic (+53/‑310) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,296,060 C→T 29.3% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,381:1 +GC 100% intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,310,468 T→G 41.1% E171D (GAA→GAC)  alsA ← D‑allose ABC transporter ATPase
RA 4,310,728 T→C 53.6% I85V (ATT→GTT)  alsA ← D‑allose ABC transporter ATPase
RA 4,318,840 A→T 48.9% L256Q (CTG→CAG)  phnJ ← carbon‑phosphorus lyase, SAM‑dependent
RA 4,323,955 T→G 42.5% N133T (AAC→ACC)  phnD ← phosphonate ABC transporter periplasmic binding protein
RA 4,356,445 A→T 16.8% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 16.8% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,370,670 C→A 50.3% intergenic (‑258/‑18) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
RA 4,422,895 C→G 15.7% A17G (GCC→GGC)  ulaE → L‑xylulose 5‑phosphate 3‑epimerase
RA 4,490,055 T→G 100% E3D (GAA→GAC)  yjgR ← DUF853 family protein with NTPase fold
RA 4,520,500 Δ1 bp 16.0% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 15.1% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,523,304 G→T 55.3% P264H (CCT→CAT)  yjhG ← putative dehydratase
RA 4,544,598 A→G 47.2% N99D (AAT→GAT)  fimC → periplasmic chaperone
RA 4,603,361 A→G 58.0% intergenic (‑503/‑116) yjjP ← / → yjjQ DUF1212 family inner membrane protein/putative transcriptional regulator
RA 4,615,859 T→G 100% T403P (ACC→CCC)  yjjI ← DUF3029 family protein, putative glycine radical enzyme
RA 4,627,706 T→G 46.4% F131C (TTT→TGT)  nadR → trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
RA 4,627,774 T→A 30.1% W154R (TGG→AGG)  nadR → trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
RA 4,631,700 T→C 100% L323P (CTT→CCT)  slt → lytic murein transglycosylase, soluble

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423699–3424600 3424600 1–902 96 [91] [95] 96 [rrfD]–[rrlD] [rrfD], [rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16653NA (NA)30 (0.210) 15/164 NT NA noncoding (1267/1345 nt) IS186 repeat region
?NC_000913 = 16691 NA (NA)noncoding (1305/1345 nt) IS186 repeat region
* ? NC_000913 = 20044NA (NA)13 (0.090) 8/168 NT NA noncoding (520/768 nt) IS1 repeat region
?NC_000913 = 20084 NA (NA)noncoding (480/768 nt) IS1 repeat region
* ? NC_000913 223597 =NA (NA)13 (0.090) 6/168 NT NA intergenic (+189/‑174) gmhB/rrsH D,D‑heptose 1,7‑bisphosphate phosphatase/16S ribosomal RNA of rrnH operon
?NC_000913 223624 = NA (NA)intergenic (+216/‑147) gmhB/rrsH D,D‑heptose 1,7‑bisphosphate phosphatase/16S ribosomal RNA of rrnH operon
* ? NC_000913 224059 =NA (NA)75 (0.530) 11/164 NT NA noncoding (289/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224082 = NA (NA)noncoding (312/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 224581NA (NA)6 (0.040) 4/164 NT NA noncoding (811/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224615 NA (NA)noncoding (845/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 225078 =NA (NA)48 (0.340) 16/164 NT NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 225998NA (NA)50 (0.340) 20/170 NT NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 226704 =NA (NA)40 (0.270) 9/170 NT NA noncoding (946/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 226730 = NA (NA)noncoding (972/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 227444NA (NA)47 (0.320) 17/168 NT NA noncoding (1686/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 227459 NA (NA)noncoding (1701/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 228016 =NA (NA)53 (0.370) 17/164 NT NA noncoding (2258/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 228041 = NA (NA)noncoding (2283/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228022NA (NA)42 (0.300) 8/164 NT NA noncoding (2264/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228033 NA (NA)noncoding (2275/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228108NA (NA)48 (0.330) 11/170 NT NA noncoding (2350/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 228124 NA (NA)noncoding (2366/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 2579070 (0.000)140 (1.000) 84/162 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
* ? NC_000913 274347 =NA (NA)35 (0.250) 12/164 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274370 =NA (NA)9 (0.060) 4/168 NT NA noncoding (780/1195 nt) IS5 repeat region
?NC_000913 274404 = NA (NA)noncoding (746/1195 nt) IS5 repeat region
* ? NC_000913 274525 =NA (NA)20 (0.140) 11/164 NT NA noncoding (625/1195 nt) IS5 repeat region
?NC_000913 274559 = NA (NA)noncoding (591/1195 nt) IS5 repeat region
* ? NC_000913 274620 =NA (NA)25 (0.180) 10/160 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 274695NA (NA)15 (0.100) 8/170 NT NA noncoding (455/1195 nt) IS5 repeat region
?NC_000913 = 274727 NA (NA)noncoding (423/1195 nt) IS5 repeat region
* ? NC_000913 274965 =NA (NA)47 (0.320) 16/172 NT NA noncoding (185/1195 nt) IS5 repeat region
?NC_000913 274991 = NA (NA)noncoding (159/1195 nt) IS5 repeat region
* ? NC_000913 = 277706NA (NA)5 (0.040) 4/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 315563 =NA (NA)21 (0.150) 10/158 NT NA noncoding (335/1255 nt) IS3 repeat region
?NC_000913 315599 = NA (NA)noncoding (371/1255 nt) IS3 repeat region
* ? NC_000913 = 315572NA (NA)16 (0.120) 6/158 NT NA noncoding (344/1255 nt) IS3 repeat region
?NC_000913 = 315588 NA (NA)noncoding (360/1255 nt) IS3 repeat region
* ? NC_000913 = 315646NA (NA)21 (0.140) 11/168 NT NA noncoding (418/1255 nt) IS3 repeat region
?NC_000913 = 315665 NA (NA)noncoding (437/1255 nt) IS3 repeat region
* ? NC_000913 = 316201NA (NA)34 (0.250) 8/160 NT NA noncoding (973/1255 nt) IS3 repeat region
?NC_000913 = 316220 NA (NA)noncoding (992/1255 nt) IS3 repeat region
* ? NC_000913 374930 =NA (NA)13 (0.090) 6/164 NT NA noncoding (1/436 nt) REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 2133462 = NA (NA)noncoding (31/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 381669NA (NA)46 (0.330) 17/164 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 = 381825NA (NA)21 (0.150) 9/164 NT NA noncoding (566/1331 nt) IS2 repeat region
?NC_000913 = 381833 NA (NA)noncoding (574/1331 nt) IS2 repeat region
* ? NC_000913 = 381837NA (NA)20 (0.140) 8/166 NT NA noncoding (578/1331 nt) IS2 repeat region
?NC_000913 = 381852 NA (NA)noncoding (593/1331 nt) IS2 repeat region
* ? NC_000913 = 381910NA (NA)54 (0.380) 10/166 NT NA noncoding (651/1331 nt) IS2 repeat region
?NC_000913 = 381923 NA (NA)noncoding (664/1331 nt) IS2 repeat region
* ? NC_000913 382110 =NA (NA)24 (0.170) 5/168 NT NA noncoding (851/1331 nt) IS2 repeat region
?NC_000913 382141 = NA (NA)noncoding (882/1331 nt) IS2 repeat region
* ? NC_000913 382237 =NA (NA)17 (0.120) 8/166 NT NA noncoding (978/1331 nt) IS2 repeat region
?NC_000913 382267 = NA (NA)noncoding (1008/1331 nt) IS2 repeat region
* ? NC_000913 = 382242NA (NA)31 (0.220) 12/166 NT NA noncoding (983/1331 nt) IS2 repeat region
?NC_000913 = 382260 NA (NA)noncoding (1001/1331 nt) IS2 repeat region
* ? NC_000913 382282 =NA (NA)40 (0.280) 12/166 NT NA noncoding (1023/1331 nt) IS2 repeat region
?NC_000913 382313 = NA (NA)noncoding (1054/1331 nt) IS2 repeat region
* ? NC_000913 = 382323NA (NA)17 (0.120) 10/168 NT NA noncoding (1064/1331 nt) IS2 repeat region
?NC_000913 = 382348 NA (NA)noncoding (1089/1331 nt) IS2 repeat region
* ? NC_000913 = 526041NA (NA)7 (0.050) 4/170 NT 100% coding (2781/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 526069 0 (0.000)coding (2809/4281 nt) rhsD Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 699425 =NA (NA)7 (0.050) 5/164 NT NA noncoding (1/98 nt) RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 699455 = NA (NA)noncoding (31/98 nt) RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 = 730045NA (NA)17 (0.120) 11/168 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 737179112 (0.730)21 (0.150) 9/166 NT 18.4% pseudogene (355/1137 nt) ybfL pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein
?NC_000913 = 3624757 82 (0.570)coding (380/1137 nt) yhhI putative transposase
* ? NC_000913 = 937227NA (NA)12 (0.090) 7/162 NT NA noncoding (4/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 937259 NA (NA)noncoding (36/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 1145931 =NA (NA)7 (0.050) 5/162 NT NA noncoding (4/75 nt) REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1145963 = NA (NA)noncoding (36/75 nt) REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1187036 =NA (NA)9 (0.060) 5/168 NT NA coding (1193/1227 nt) pepT peptidase T
?NC_000913 1187066 = NA (NA)coding (1223/1227 nt) pepT peptidase T
* ? NC_000913 1190580 =NA (NA)7 (0.050) 5/166 NT NA noncoding (1/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1190603 = NA (NA)intergenic (‑156/+13) phoP/purB response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase
* ? NC_000913 = 1209618108 (0.700)33 (0.260) 29/148 NT 22.7% pseudogene (2/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
?NC_000913 2471897 = 135 (1.060)pseudogene (226/579 nt) yfdL pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related
* ? NC_000913 = 1286639NA (NA)8 (0.060) 4/168 NT NA noncoding (46/72 nt) REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 1286665 NA (NA)noncoding (72/72 nt) REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1294420 =NA (NA)9 (0.060) 5/168 NT NA intergenic (+276/+6) tdk/insZ thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog
?NC_000913 1294445 = NA (NA)noncoding (961/980 nt) ISZ repeat region
* ? NC_000913 = 12994980 (0.000)150 (1.020) 91/170 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 1382894NA (NA)6 (0.040) 5/164 NT NA noncoding (28/74 nt) REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 1382910 NA (NA)noncoding (44/74 nt) REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 1432761NA (NA)15 (0.100) 8/170 NT NA coding (351/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
?NC_000913 = 1432785 NA (NA)coding (375/576 nt) tfaR Rac prophage; putative tail fiber assembly protein
* ? NC_000913 = 1468681NA (NA)78 (1.010)
+44 bp		 11/90 NT NA noncoding (560/1331 nt) IS2 repeat region
?NC_000913 1650843 = NA (NA)noncoding (1/706 nt) IS2 repeat region
* ? NC_000913 = 1636407106 (0.690)21 (0.170) 9/146 NT 18.0% intergenic (‑40/‑349) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
?NC_000913 = 1636432 104 (0.830)intergenic (‑65/‑324) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
* ? NC_000913 = 1909276102 (0.660)21 (0.160) 11/156 NT 17.9% intergenic (+112/+32) yobH/kdgR uncharacterized protein/KDG regulon transcriptional repressor
?NC_000913 = 1909289 104 (0.770)intergenic (+125/+19) yobH/kdgR uncharacterized protein/KDG regulon transcriptional repressor
* ? NC_000913 = 1974949131 (0.850)23 (0.160) 11/166 NT 15.3% coding (376/1965 nt) cheA fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein
?NC_000913 = 1974961 132 (0.920)coding (364/1965 nt) cheA fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein
* ? NC_000913 = 19785021 (0.010)105 (0.750) 65/162 NT 99.6% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein
* ? NC_000913 = 20668320 (0.000)27 (0.200) 13/160 NT 100% noncoding (522/1195 nt) IS5 repeat region
?NC_000913 = 2066857 NA (NA)noncoding (497/1195 nt) IS5 repeat region
* ? NC_000913 = 2133431NA (NA)13 (0.090) 8/164 NT NA intergenic (‑34/+59) wcaA/wzc putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase
?NC_000913 = 2133461 NA (NA)noncoding (30/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 = 2139701NA (NA)12 (0.080) 7/164 NT NA intergenic (+216/+58) yegH/asmA inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
?NC_000913 = 2139734 NA (NA)noncoding (33/37 nt) REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 2169619 =NA (NA)8 (0.060) 5/166 NT NA intergenic (+8/+74) yegS/gatR phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
?NC_000913 2169643 = NA (NA)intergenic (+32/+50) yegS/gatR phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
* ? NC_000913 = 2304696NA (NA)21 (0.150) 7/164 NT 24.6% noncoding (280/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2304728 70 (0.460)noncoding (312/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 2304789186 (1.210)28 (0.290)
+33 bp		 10/112 NT 19.4% noncoding (373/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 2305065 NA (NA)noncoding (649/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 2340313 =NA (NA)12 (0.080) 7/164 NT NA noncoding (1/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2340346 = NA (NA)noncoding (34/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2511352 =NA (NA)10 (0.070) 4/164 NT NA noncoding (1/88 nt) REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2511384 = NA (NA)noncoding (33/88 nt) REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 2539674NA (NA)25 (0.180) 18/164 NT NA intergenic (‑91/+43) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
?NC_000913 = 2539688 NA (NA)intergenic (‑105/+29) cysM/cysA cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit
* ? NC_000913 = 2593024NA (NA)11 (0.080) 7/164 NT NA noncoding (47/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2593056 NA (NA)noncoding (79/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 2618037NA (NA)15 (0.100) 8/166 NT NA intergenic (+100/+38) yfgD/hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
?NC_000913 = 2618053 NA (NA)intergenic (+116/+22) yfgD/hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
* ? NC_000913 2662311 =NA (NA)13 (0.090) 9/168 NT NA noncoding (3/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 2662337 = NA (NA)noncoding (29/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
* ? NC_000913 2726200 =NA (NA)80 (0.560) 13/166 NT NA intergenic (‑12/+81) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
?NC_000913 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
* ? NC_000913 2727847 =NA (NA)27 (0.180) 8/170 NT NA noncoding (1338/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727872 = NA (NA)noncoding (1313/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2727891 =NA (NA)72 (0.500) 18/166 NT NA noncoding (1294/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727910 = NA (NA)noncoding (1275/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2728214 =NA (NA)51 (0.350) 12/170 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 = 27294394 (0.030)10 (0.070) 8/168 NT 72.6% noncoding (6/76 nt) gltW tRNA‑Glu
?NC_000913 3943424 = NA (NA)intergenic (+75/‑11) rrsC/gltU 16S ribosomal RNA of rrnC operon/tRNA‑Glu
* ? NC_000913 = 2750110115 (0.750)20 (0.140) 10/162 NT 15.1% intergenic (+50/+5) yfjD/grpE UPF0053 family inner membrane protein/heat shock protein
?NC_000913 = 2750123 121 (0.870)coding (586/594 nt) grpE heat shock protein
* ? NC_000913 2937381 =NA (NA)12 (0.080) 7/164 NT NA intergenic (+22/‑87) fucI/fucK L‑fucose isomerase/L‑fuculokinase
?NC_000913 2937405 = NA (NA)intergenic (+46/‑63) fucI/fucK L‑fucose isomerase/L‑fuculokinase
* ? NC_000913 3163644 =NA (NA)14 (0.100) 6/160 NT NA noncoding (1/30 nt) REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3163674 = NA (NA)intergenic (‑193/+41) plsC/parC 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A
* ? NC_000913 3203112 =NA (NA)23 (0.160) 8/164 NT NA coding (1222/1239 nt) cca fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
?NC_000913 3203140 = NA (NA)intergenic (+11/+170) cca/bacA fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase
* ? NC_000913 = 3217490NA (NA)13 (0.090) 8/164 NT NA noncoding (57/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3217522 NA (NA)noncoding (89/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3281702 =NA (NA)10 (0.070) 6/164 NT NA noncoding (1/82 nt) REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3281734 = NA (NA)noncoding (33/82 nt) REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 3423749 =10 (0.070)5 (0.040) 4/164 NT 35.2% noncoding (39/120 nt) rrfD 5S ribosomal RNA of rrnD operon
?NC_000913 = 4040597 NA (NA)noncoding (81/120 nt) rrfA 5S ribosomal RNA of rrnA operon
* ? NC_000913 3428910 =23 (0.150)14 (0.100) 8/168 NT 39.2% intergenic (‑148/‑326) rrsD/yrdA 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein
?NC_000913 = 4207974 NA (NA)intergenic (‑442/‑173) purH/rrsE IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon
* ? NC_000913 3546222 =NA (NA)13 (0.090) 8/166 NT NA noncoding (1/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3546254 = NA (NA)noncoding (33/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 3555795 =NA (NA)10 (0.070) 7/162 NT NA intergenic (+5/+38) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
?NC_000913 3555821 = NA (NA)intergenic (+31/+12) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
* ? NC_000913 3619789 =NA (NA)4 (0.030) 3/172 NT 100% coding (598/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3619849 = 0 (0.000)coding (658/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3619974NA (NA)4 (0.030) 4/162 NT NA coding (783/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620019 NA (NA)coding (828/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620116NA (NA)20 (0.140) 7/166 NT 100% coding (925/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620152 0 (0.000)coding (961/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620220NA (NA)19 (0.130) 8/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3620569 =NA (NA)35 (0.240) 11/166 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620614NA (NA)31 (0.220) 9/166 NT 100% coding (1423/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620635 0 (0.000)coding (1444/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3621557 =NA (NA)7 (0.050) 4/170 NT NA coding (2366/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3621605 = NA (NA)coding (2414/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3622174NA (NA)10 (0.070) 5/168 NT 91.4% coding (2983/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3622205 1 (0.010)coding (3014/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3622466 =NA (NA)31 (0.210) 12/170 NT 49.6% coding (3275/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622497 = 33 (0.210)coding (3306/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3622540 =NA (NA)37 (0.260) 10/168 NT 100% coding (3349/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622556 = 0 (0.000)coding (3365/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3676121 =NA (NA)22 (0.160) 9/164 NT NA noncoding (1/161 nt) RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 3676146 = NA (NA)noncoding (26/161 nt) RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
* ? NC_000913 3898629 =NA (NA)20 (0.140) 11/162 NT NA intergenic (+20/+42) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
?NC_000913 3898659 = NA (NA)intergenic (+50/+12) cbrC/yieK UPF0167 family protein/putative 6‑phosphogluconolactonase
* ? NC_000913 = 394152130 (0.200)10 (0.070) 7/168 NT 26.1% intergenic (‑194/‑287) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
?NC_000913 = 3941548 NA (NA)intergenic (‑221/‑260) yieP/rrsC putative transcriptional regulator/16S ribosomal RNA of rrnC operon
* ? NC_000913 = 3943543NA (NA)13 (0.100) 6/156 NT 100% intergenic (+33/‑161) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 3943583 0 (0.000)intergenic (+73/‑121) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
* ? NC_000913 = 4035360NA (NA)23 (0.160) 10/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
* ? NC_000913 4040482 =NA (NA)71 (0.500) 14/166 NT NA intergenic (+59/‑35) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
* ? NC_000913 4132351 =NA (NA)9 (0.060) 4/162 NT NA noncoding (5/34 nt) REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4132381 = NA (NA)intergenic (+114/‑235) metL/metF Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
* ? NC_000913 4325806 =NA (NA)31 (0.220) 9/164 NT NA noncoding (5/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 4325838 = NA (NA)noncoding (37/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 4326250NA (NA)13 (0.090) 5/164 NT NA noncoding (449/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 4326380 NA (NA)noncoding (579/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 = 4326350NA (NA)14 (0.100) 10/164 NT NA noncoding (549/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 = 4326380 NA (NA)noncoding (579/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 4332016 =NA (NA)8 (0.060) 5/160 NT NA noncoding (3/32 nt) REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4332047 = NA (NA)intergenic (+43/‑69) proP/pmrR proline/glycine betaine transporter/putative membrane‑bound BasS regulator
* ? NC_000913 = 4415961NA (NA)15 (0.100) 9/166 NT NA noncoding (4/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4415991 NA (NA)noncoding (34/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 4415962 =NA (NA)15 (0.100) 11/166 NT NA noncoding (5/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4415992 = NA (NA)intergenic (+92/+25) aidB/yjfN DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein
* ? NC_000913 = 4457231NA (NA)15 (0.110) 12/164 NT NA noncoding (47/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4457264 NA (NA)noncoding (80/84 nt) REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 4460417 =NA (NA)19 (0.130) 10/168 NT NA noncoding (3/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4460445 = NA (NA)noncoding (31/84 nt) REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 4587878NA (NA)13 (0.090) 5/162 NT NA noncoding (7/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4587891 NA (NA)noncoding (20/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences