Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,627,774 |
T→A |
30.1% |
W154R (TGG→AGG) |
nadR → |
trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,627,774 | 0 | T | A | 30.1%
| 250.7
/ 150.2
| 178 | W154R (TGG→AGG) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base T (47/76); new base A (30/23); total (78/100) |
| Fisher's exact test for biased strand distribution p-value = 3.12e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.62e-01 |
Only 100 of 182 total aligned reads displayed.
CCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTA > NC_000913/4627675‑4627871
|
ccGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCt > 2:13620/1‑100 (MQ=255)
tCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGAt > 1:3492766/1‑100 (MQ=255)
cGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGTCTGGGAtg > 2:2765107/1‑100 (MQ=255)
cGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGAtg < 2:4151683/100‑1 (MQ=255)
cGTCTGCGTTGGTTATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGAtg < 2:1707118/100‑1 (MQ=255)
gTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGAtgt > 1:3216973/1‑100 (MQ=255)
cTGCGTTGGTTATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGAtgtgt > 2:2329817/1‑100 (MQ=255)
tGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGAtgtgt > 1:4063522/1‑99 (MQ=255)
gCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTgg < 1:1762220/100‑1 (MQ=255)
gCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTgg < 2:4068027/100‑1 (MQ=255)
gCGTTGGTTATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTgg < 1:3105734/100‑1 (MQ=255)
gCGTTGGTTATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCACACGGCTGGGATGTGTgg > 2:875054/1‑100 (MQ=255)
cGTTGGTTATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGa < 2:1606409/100‑1 (MQ=255)
gTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAg < 1:3646321/100‑1 (MQ=255)
gTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAg < 2:2187908/100‑1 (MQ=255)
ttGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGc < 2:1827917/100‑1 (MQ=255)
ttGGTTATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGc < 2:1346558/100‑1 (MQ=255)
ttATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACg < 2:1489733/100‑1 (MQ=255)
tATTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACgg < 2:1190967/100‑1 (MQ=255)
aTTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGc < 2:2039625/100‑1 (MQ=255)
aTTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGc < 1:2092688/100‑1 (MQ=255)
aTTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGc < 2:896524/100‑1 (MQ=255)
aTTGCAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGc > 2:1658167/1‑100 (MQ=255)
ttGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCa > 1:2413739/1‑100 (MQ=255)
gCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATc < 1:3881147/100‑1 (MQ=255)
cAAACTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCa < 2:3337209/100‑1 (MQ=255)
cTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCaaaa < 1:2410754/99‑1 (MQ=255)
cTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCaaaaa > 2:3887639/1‑100 (MQ=255)
cTTGTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCaaaaa > 2:61830/1‑100 (MQ=255)
tttAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGt > 2:2489681/1‑100 (MQ=255)
aaTATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTAt < 1:4108587/100‑1 (MQ=255)
tatCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATgg < 2:3990472/100‑1 (MQ=255)
tatCAGAAAAATATTCGCATTCATGCTCTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATgg < 1:3342322/100‑1 (MQ=255)
tCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCt > 2:962535/1‑100 (MQ=255)
tCAGAAAAATATTCGCATTCATACTTTCAACGAAGAGGTCATGGAGCCGTATCCGCAAGGAATGGATGTGTGGAGCAGCGGCATCAAAACGTTTATGGc > 1:340554/1‑99 (MQ=255)
cAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTg > 1:4223941/1‑100 (MQ=255)
aGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGa > 2:3776019/1‑100 (MQ=255)
gAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGaa < 2:1738507/100‑1 (MQ=255)
aaaTATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGaaaaa < 2:4228623/100‑1 (MQ=255)
atatTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAgg < 2:3648710/100‑1 (MQ=255)
atatTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAgg < 1:1381182/100‑1 (MQ=255)
ttCTCATTCATGCTTTGAACGAAGAGGGAAGGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAATGGAt < 1:1272149/100‑1 (MQ=255)
ttCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGAt < 2:4265930/100‑1 (MQ=255)
ttCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGAt > 1:2393321/1‑100 (MQ=255)
cGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATcc < 1:1627016/100‑1 (MQ=255)
cGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATcc < 2:1230555/100‑1 (MQ=255)
cGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGCCTGGGATGTGTGGAGCAACGGCATCAAAAAGCTTATGGCTGAAAAAGGGATcc > 2:567573/1‑100 (MQ=255)
cATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAg > 1:3569451/1‑100 (MQ=255)
aTTCATGCTTTCAACGAAGCGGGCATGGAGCCGTATCAGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGGTACTGGCTGAAAAAGGGATCCAGc > 1:606960/1‑100 (MQ=255)
aTTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGc > 2:3523642/1‑100 (MQ=255)
ttCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGcc > 2:2062018/1‑100 (MQ=255)
tCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGAATAAAAAAAAAAAAGGGATCCAGCCg < 1:1558706/100‑1 (MQ=255)
cATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCgg > 1:3194597/1‑100 (MQ=255)
cATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCgg > 1:3188053/1‑100 (MQ=255)
gCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatc < 2:2640453/100‑1 (MQ=255)
gCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatc < 1:271531/100‑1 (MQ=255)
ttCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGGGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctga > 1:1331387/1‑100 (MQ=255)
ttCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctga > 2:613045/1‑100 (MQ=255)
tCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctgat < 1:2978205/100‑1 (MQ=255)
tCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctgat > 2:3771448/1‑100 (MQ=255)
cAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctgttc < 2:3856323/100‑1 (MQ=255)
cAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGGGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCAAGCCGgatctgatc > 1:428565/1‑100 (MQ=255)
aaCGAAGAGGGCATGGAGTCGTATCCGCGCGGCTGGAATGTGTGGAGCAACGTCATCAAAAAGTTTATAGATAAAAAAGGGATCCGGCTGgatccctt < 1:3511659/98‑5 (MQ=255)
aaCGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGgatctgatct < 2:2223534/100‑1 (MQ=255)
aaCGAAGAGGGCATGGAGCCGTATCCGCACCGCTGGGATTTGTGGAGCGACGGCATCTAAAAAAAAAAAAAAAAAAAAGGGATCCAGCCGgatctgatc < 1:2763254/99‑1 (MQ=255)
aCGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTa > 2:3097841/1‑100 (MQ=255)
aCGAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTa > 1:2766348/1‑100 (MQ=255)
cGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCGGCTGgatccctttttc < 2:3121223/100‑9 (MQ=255)
cGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTac > 2:3165312/1‑100 (MQ=255)
cGAAGAGGGCATGGAGCCGTATCCGCACGGCCGGGATGTGTGGCGCAACGGCATCAAAAAGTTTAAGGCTGAAACAGGGATCCAGCCGGACATGATCTac > 1:299657/1‑100 (MQ=255)
cGAAGAGGGCATAGAGCCGTATCCGCACGACAGGGATGTGTGGAGCAACGGCATCAAAAAGAAAAAAAAAAAAAAAGGGATCCAGCCGGATCTGATCTac < 1:1469413/100‑1 (MQ=255)
gAAGAGGGCATGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTaca < 1:903712/100‑1 (MQ=255)
agagGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACAcc < 2:3358532/100‑1 (MQ=255)
agagGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGTTCTACAcc < 2:3195072/100‑1 (MQ=255)
gggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTATATAGATAAAAAAGGGATCCAGCCGGATCTGATCTACACCTCg < 1:2580730/100‑1 (MQ=255)
ggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCgg > 2:3455325/1‑100 (MQ=255)
ggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCgg < 2:3819211/100‑1 (MQ=255)
ggCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGAGACCCAGCCCGCTCTGATCTACACCTCgg < 1:3912741/100‑1 (MQ=255)
aTGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGgaag < 2:2872642/100‑1 (MQ=255)
tGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGgaaga < 2:3119519/100‑1 (MQ=255)
tGGAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGgaaga > 1:1428478/1‑100 (MQ=255)
gAGCCGTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGaagaag > 1:2827412/1‑100 (MQ=255)
agtcGTATCCGCACAGCTGAGATGTGTGGAGCAACGGCATCAAAAAGAAAAAAAATAAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGaagaag < 1:1843720/96‑1 (MQ=255)
aGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGc > 2:3607947/1‑100 (MQ=255)
gCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGcc > 1:3153419/1‑100 (MQ=255)
gTATCCGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGAt > 1:107470/1‑100 (MQ=255)
tCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATgcg < 1:3607933/100‑1 (MQ=255)
tCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATgcg < 2:3268632/100‑1 (MQ=255)
cGCACGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGcc > 1:3724375/1‑100 (MQ=255)
cACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCcac < 2:942513/100‑1 (MQ=255)
aCGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCcaca < 2:3354626/100‑1 (MQ=255)
cGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAg > 2:2653445/1‑100 (MQ=255)
cGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAg > 2:1058911/1‑100 (MQ=255)
cGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAg < 1:1152067/100‑1 (MQ=255)
cGGCAGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATTTTTTTTAATGATACGGCGACCACCGAGATCTACACCTCGGAAGAAGCCGATGCGCCACAg < 1:1485059/100‑1 (MQ=255)
ggCTGGGATGTGTGGAGCAACGGCATCAAAAAGAATATAACTAAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAg < 1:1701190/99‑1 (MQ=255)
gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGta < 2:19857/100‑1 (MQ=255)
gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGta < 2:1946919/100‑1 (MQ=255)
gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGAGCTACACCTCGGAAGAAGCCGATGCGCCACAGta > 1:557418/1‑100 (MQ=255)
gCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGACGGCGCCGGATGAGATCTACACCTCGGAAGAAGCCGATGCGCCACAGta < 1:2267153/100‑1 (MQ=255)
|
CCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCGTATCCGCACGGCTGGGATGTGTGGAGCAACGGCATCAAAAAGTTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTA > NC_000913/4627675‑4627871
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
