Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F56 I0 R1	215	141.2	6785521	95.3%	6466601	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,568,688	C→A	20.3%	intergenic (‑169/‑310)	mdtM ← / → yjiP	multidrug efflux system protein/pseudogene, transposase_31 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,568,688	0	C	A	20.3%	373.5 / 85.1	164	intergenic (‑169/‑310)	mdtM/yjiP	multidrug efflux system protein/pseudogene, transposase_31 family protein
Reads supporting (aligned to +/- strand): ref base C (63/66); new base A (19/14); total (83/81)
Fisher's exact test for biased strand distribution p-value = 4.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.04e-01

Only 100 of 166 total aligned reads displayed.

AGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAAT  >  NC_000913/4568589‑4568787

 ggCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCg                                                                                                    >  2:2039433/1‑100 (MQ=255)

  gCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCgg                                                                                                   >  2:1679856/1‑100 (MQ=255)

   cAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTACTCAACCACACTGCCTGTGAACACACAGACAGAGAGATACTTTCTGACTTCggg                                                                                                  <  1:64666/100‑1 (MQ=255)

    aGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAgg                                                                                                   >  1:2564277/1‑98 (MQ=255)

     ggTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCgg                                                                                                   >  1:2583884/1‑97 (MQ=255)

        gagaAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGa                                                                                             >  1:2015015/1‑100 (MQ=255)

        gagaAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGa                                                                                             >  1:178505/1‑100 (MQ=255)

           aaGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATg                                                                                          <  1:1261715/100‑1 (MQ=255)

           aaGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATg                                                                                          >  2:441478/1‑100 (MQ=255)

            aGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGt                                                                                         >  2:1233045/1‑100 (MQ=255)

            aGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGt                                                                                         >  1:593007/1‑100 (MQ=255)

            aGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGt                                                                                         >  1:350344/1‑100 (MQ=255)

             gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGta                                                                                        <  2:2909176/100‑1 (MQ=255)

             gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGta                                                                                        <  2:336984/100‑1 (MQ=255)

             gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGta                                                                                        >  1:548059/1‑100 (MQ=255)

             gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGta                                                                                        >  2:3088105/1‑100 (MQ=255)

                cAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATaa                                                                                     >  2:400511/1‑100 (MQ=255)

                    gagaCTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGAt                                                                                 <  2:813696/100‑1 (MQ=255)

                      gaCTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTa                                                                               <  2:2988819/100‑1 (MQ=255)

                        cTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACa                                                                             >  2:2544065/1‑100 (MQ=255)

                        cTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACa                                                                             >  2:3306092/1‑100 (MQ=255)

                        cTGCAAATGTACTGAATGTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTAc                                                                              >  1:2394540/1‑99 (MQ=255)

                         tGCAAATGTACTGAATTTCATGTAATCGACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACaa                                                                            <  1:1923594/100‑1 (MQ=255)

                           cAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAAt                                                                          <  1:36909/100‑1 (MQ=255)

                           cAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAAt                                                                          >  1:1654286/1‑100 (MQ=255)

                           cAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAAt                                                                          >  2:1896650/1‑100 (MQ=255)

                            aaaTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATa                                                                         <  2:1584775/100‑1 (MQ=255)

                            aaaTGTACTGAATTTCATGGAATCAACCACACTTCCTGTTAACACACAGACAGAGAAATACTTTCTGACTGCGGGTCAGAATGTATAACGATTACAAATa                                                                         <  1:141227/100‑1 (MQ=255)

                             aaTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAg                                                                        >  1:2788411/1‑100 (MQ=255)

                             aaTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAg                                                                        <  2:2167129/100‑1 (MQ=255)

                             aaTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAg                                                                        <  2:2216558/100‑1 (MQ=255)

                              aTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGt                                                                       <  1:657030/100‑1 (MQ=255)

                               tGTACTGAATTACATGTAATCACCCACACTGCCTGTAAACACACAAACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATACtc                                                                      <  2:747561/100‑1 (MQ=255)

                                gTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGAGTCAGAATGTATAACGATTACAAATAGtca                                                                     >  1:539702/1‑100 (MQ=255)

                                   cTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGtcatca                                                                  <  1:2887982/100‑1 (MQ=255)

                                    tGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAg                                                                 <  1:2792791/100‑1 (MQ=255)

                                    tGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAg                                                                 <  1:868383/100‑1 (MQ=255)

                                     gAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGc                                                                >  2:581550/1‑100 (MQ=255)

                                      aaTTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGca                                                               <  1:1523627/100‑1 (MQ=255)

                                          tCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACAtt                                                           <  1:2465001/100‑1 (MQ=255)

                                          tCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACAtt                                                           >  2:2705905/1‑100 (MQ=255)

                                            aTGTAATCAACCACACTGCCTGTGAACACACAGACAAAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTac                                                         >  2:2392695/1‑100 (MQ=255)

                                               tAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACAcc                                                      <  2:2942483/100‑1 (MQ=255)

                                                   cAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCtt                                                  >  2:1003662/1‑100 (MQ=255)

                                                   cAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGCCAGAATGTATAAACATTACAAATAGTAATCAGCACATTaca                                                        >  1:326954/1‑94 (MQ=255)

                                                    aaCCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTg                                                 <  1:784064/100‑1 (MQ=255)

                                                    aaCCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTg                                                 <  1:146271/100‑1 (MQ=255)

                                                    aaCCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTg                                                 <  2:2803104/100‑1 (MQ=255)

                                                     aCCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGa                                                >  1:198892/1‑100 (MQ=255)

                                                       cacaCTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAAt                                              >  2:2273019/1‑100 (MQ=255)

                                                       cacaCTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAAt                                              <  2:1574950/100‑1 (MQ=255)

                                                       cacaCTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAAt                                              <  1:104780/100‑1 (MQ=255)

                                                        acacTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAACTAGTCATCAGCACATTACACCTCTTGAAtt                                             <  1:1975167/100‑1 (MQ=255)

                                                        acacTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAAtt                                             <  1:2518358/100‑1 (MQ=255)

                                                         cacTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTg                                            <  1:2744931/100‑1 (MQ=255)

                                                           cTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGAt                                          >  1:3229478/1‑100 (MQ=255)

                                                            tGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATg                                         <  1:2239124/100‑1 (MQ=255)

                                                             gCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATgg                                        >  1:465252/1‑100 (MQ=255)

                                                             gCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATgg                                        <  2:143196/100‑1 (MQ=255)

                                                             gCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATgg                                        >  2:1522764/1‑100 (MQ=255)

                                                              ccTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATggg                                       <  2:601443/100‑1 (MQ=255)

                                                              ccTGTGAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATggg                                       >  2:1268325/1‑100 (MQ=255)

                                                                 gtgAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTg                                    >  1:2947600/1‑100 (MQ=255)

                                                                 gtgAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTg                                    <  2:863828/100‑1 (MQ=255)

                                                                 gtgAACACACAGACAGAGAAATACTTTCTGACTTCGGGACAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTg                                    >  1:1891288/1‑100 (MQ=255)

                                                                  tgAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGc                                   <  1:1793241/100‑1 (MQ=255)

                                                                  tgAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGc                                   >  1:13596/1‑100 (MQ=255)

                                                                  tgAACACACAGACAGAGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGc                                   <  1:3305149/100‑1 (MQ=255)

                                                                   gAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCa                                  <  2:2788434/100‑1 (MQ=255)

                                                                    aaCACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCAt                                 <  1:1325043/100‑1 (MQ=255)

                                                                        cacaGACAGAGAAGTACTTTCTGCCTTAGGGTCAGAATGTATAACGATTCCAAATAGTCATCAGCACATTACACCTCTTGAATTGCTGGGTTACATCGa                              >  1:2096039/1‑99 (MQ=255)

                                                                        cacaGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGaa                             >  2:1872799/1‑100 (MQ=255)

                                                                           agacagaGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAat                          <  1:3335727/100‑1 (MQ=255)

                                                                            gacagaGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAata                         <  1:1159769/100‑1 (MQ=255)

                                                                            gacagaGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAata                         >  1:1955895/1‑100 (MQ=255)

                                                                            gacagaGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAata                         <  1:914437/100‑1 (MQ=255)

                                                                            gacagaGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAata                         <  1:1691004/100‑1 (MQ=255)

                                                                              cagaGAAATACTTTCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAAtata                       >  2:2593302/1‑100 (MQ=255)

                                                                                gagaAATACTTTCTGACTTCGGGTCAGAATGTGTAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATaca                     >  2:3212889/1‑100 (MQ=255)

                                                                                gagaAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATaca                     >  2:2430793/1‑100 (MQ=255)

                                                                                  gaAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACAcc                   >  1:2210834/1‑100 (MQ=255)

                                                                                     aTACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTa                <  2:1551306/100‑1 (MQ=255)

                                                                                       aCTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAg              <  2:256198/100‑1 (MQ=255)

                                                                                         tttCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtg            <  2:1469061/100‑1 (MQ=255)

                                                                                         tttCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtg            <  1:939088/100‑1 (MQ=255)

                                                                                         ttgttGACTTGGGATCATAATGTATAACGATTACAAATATTCATCAGCACATTACACCTTGTGAATTGATGGGTTGCATAGCAATTATACACCTTAAgtg            <  1:2081629/96‑1 (MQ=255)

                                                                                          ttCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtgt           <  1:572477/100‑1 (MQ=255)

                                                                                          ttCTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtgt           >  1:1592183/1‑100 (MQ=255)

                                                                                            cTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTaa         >  1:970903/1‑100 (MQ=255)

                                                                                            cTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTaa         >  2:1205534/1‑100 (MQ=255)

                                                                                            cTGACTTAGGGTCAGAATGTATAACTATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTa          <  1:1364852/99‑1 (MQ=255)

                                                                                            cTGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTaa         <  1:373800/100‑1 (MQ=255)

                                                                                             tGACTTCGGGTCAGAATGTATAACGATTACAAATATTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAAt        <  2:623762/100‑1 (MQ=255)

                                                                                             tGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAAt        >  1:54098/1‑100 (MQ=255)

                                                                                             tGACTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAAt        <  1:2966685/100‑1 (MQ=255)

                                                                                              gACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAAtt       >  2:2877321/1‑100 (MQ=255)

                                                                                               aCTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAAtt       >  1:1508448/1‑99 (MQ=255)

                                                                                                cTTAGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAATTGTAATTaa     >  1:3242167/1‑100 (MQ=255)

                                                                                                  tCGGGTCAGAATGTATAACGATTACAAATAGTCGTCAGCACATTACACCTCTTTAATTGATGTGTTGCATAGAAAATATACACCTTAAGTGTAATTaaaa   <  1:3125387/100‑1 (MQ=255)

                                                                                                   cGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAAt  >  1:1233373/1‑100 (MQ=255)

AGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAAT  >  NC_000913/4568589‑4568787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A