Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I1 R1
|
99 |
64.8 |
3148104 |
96.3% |
3031624 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,736,609 |
G→A |
P190L (CCA→CTA) |
bax ← |
putative glucosaminidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,736,609 | 0 | G | A | 96.7%
| 193.9
/ ‑1.7
| 60 | P190L (CCA→CTA) | bax | putative glucosaminidase |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (27/31); total (27/33) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 |
GAACGAAGAGTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTGGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTCTGCT > NC_000913/3736512‑3736701
|
gAACGAAGAGTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAgc < 2:1348585/100‑1 (MQ=255)
cGAAGAGTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCa > 1:203801/1‑100 (MQ=255)
gAAGAGTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCAt > 1:211372/1‑100 (MQ=255)
agagTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTg > 1:802541/1‑100 (MQ=255)
gTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTa < 1:455876/100‑1 (MQ=255)
gTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTa > 1:73679/1‑100 (MQ=255)
gTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTa < 2:175818/100‑1 (MQ=255)
gTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTa < 2:1099600/100‑1 (MQ=255)
tAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTAc < 1:21889/100‑1 (MQ=255)
ccGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACg < 1:52258/100‑1 (MQ=255)
ggTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTcc < 1:1280608/100‑1 (MQ=255)
ggTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTcc > 1:1292345/1‑100 (MQ=255)
gCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCttt > 2:612687/1‑100 (MQ=255)
cGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTc > 2:1335789/1‑100 (MQ=255)
tATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCAt < 1:1365012/100‑1 (MQ=255)
tATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCAt < 2:370383/100‑1 (MQ=255)
aTTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATg < 1:302251/100‑1 (MQ=255)
aTTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATg < 1:767102/100‑1 (MQ=255)
ttCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGc > 1:1433321/1‑100 (MQ=255)
gatctgTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCAttt < 2:1050497/95‑1 (MQ=255)
tAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCAt < 1:1208768/100‑1 (MQ=255)
aGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTGGCGCATTGGTACAACGTCCTTTCATGCATTTCATg < 2:1375876/100‑1 (MQ=255)
gTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCAtttagatc > 1:1050504/1‑95 (MQ=255)
gTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGc < 2:580793/100‑1 (MQ=255)
gACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCg < 2:356651/100‑1 (MQ=255)
aGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGACCAg < 2:857152/100‑1 (MQ=255)
gcTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGgttg > 1:398652/1‑100 (MQ=255)
cACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGgttgttg < 2:1292336/100‑1 (MQ=255)
aCCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGgttgttgt > 2:1047439/1‑100 (MQ=255)
aCCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGgttgttgt < 2:73679/100‑1 (MQ=255)
cGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGgttgttgttg < 2:303187/100‑1 (MQ=255)
ttCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGttgttgttgttg < 2:606272/100‑1 (MQ=255)
tCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGCTTGTTGTTGTTgc > 1:914295/1‑100 (MQ=255)
cTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTgcg > 1:1482740/1‑100 (MQ=255)
tttGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTgcgc > 1:974044/1‑100 (MQ=255)
tttGACAGAACTAAACTGTGAGTACCCTGTCACTTTACCTAGCGCATTGGTACATCGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTgcgc < 2:398952/100‑1 (MQ=255)
ttGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTgcgcg > 1:312347/1‑100 (MQ=255)
gACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGcc > 2:400617/1‑100 (MQ=255)
aCAGAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTTTTGTTGCGCGCCa < 2:974036/100‑1 (MQ=255)
gAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCt > 2:294866/1‑100 (MQ=255)
gAACTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCt > 1:158551/1‑100 (MQ=255)
cTAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCg > 2:178299/1‑100 (MQ=255)
tAAACTGTGAGTACCCTTTCACTTTACCTGGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCTCGCCAGCTTCGa < 1:1030766/100‑1 (MQ=255)
tAAACTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGa < 1:1257019/100‑1 (MQ=255)
aaaCTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGAc < 2:977012/100‑1 (MQ=255)
aaaCTGTGAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGAc > 2:786690/1‑100 (MQ=255)
tgtgAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTc < 1:376019/100‑1 (MQ=255)
gtgAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTcc < 2:1309751/100‑1 (MQ=255)
gAGTACCCTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTcccc < 1:531950/100‑1 (MQ=255)
cccTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCg > 2:1396540/1‑100 (MQ=255)
ccTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGc > 1:223208/1‑100 (MQ=255)
cTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCt > 2:50072/1‑100 (MQ=255)
cTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCt > 2:210855/1‑100 (MQ=255)
cTTTCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCAAGCTTCGACGTTCCCCAACCGCt > 2:935848/1‑100 (MQ=255)
tttCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCtt < 1:1381477/100‑1 (MQ=255)
tCACTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTc < 1:1232774/100‑1 (MQ=255)
aCTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTctg > 2:1333344/1‑100 (MQ=255)
cTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTctgc < 1:1333353/100‑1 (MQ=255)
cTTTACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTctcc > 2:684581/1‑98 (MQ=255)
tttACCTAGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTctgct < 2:1085710/100‑1 (MQ=255)
|
GAACGAAGAGTAAGCCGGGTGCGTATTCAGGTTAGTGACATAGGCGCTCACCGATTCTTTGACAGAACTAAACTGTGAGTACCCTTTCACTTTACCTGGCGCATTGGTACAACGTCCTTTCATGCATTTCATGCCGAACAGGTTGTTGTTGTTGCGCGCCAGCTTCGACGTTCCCCAACCGCTTTCTGCT > NC_000913/3736512‑3736701
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
