Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F56 I0 R1 312 170.3 8276235 93.7% 7754832 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 265,418 A→G 28.2% R42R (CGT→CGC)  ykfF ← CP4‑6 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913265,4180AG28.2% 184.9 / 100.5 140R42R (CGT→CGC) ykfFCP4‑6 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base A (54/45);  new base G (20/19);  total (75/65)
Fisher's exact test for biased strand distribution p-value = 8.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.35e-01

Only 100 of 144 total aligned reads displayed.

GTCTGTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGCCCC  >  NC_000913/265319‑265517
                                                                                                   |                                                                                                   
gtCTGTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCa                                                                                                     >  2:2353261/1‑100 (MQ=255)
gtCTGTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCa                                                                                                     <  2:1270445/100‑1 (MQ=255)
  cTGTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCGCGCCAGACCATCCGGCCTTCAGTATCAc                                                                                                    >  2:3391410/1‑99 (MQ=255)
   tGTACGGATGCCTGAGGTGCGGATATAGCGGTTACGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGa                                                                                                  >  1:3878566/1‑100 (MQ=255)
   tGTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGa                                                                                                  <  1:86549/100‑1 (MQ=255)
    gTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGaa                                                                                                 >  2:1411247/1‑100 (MQ=255)
     tACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAac                                                                                                <  1:434884/100‑1 (MQ=255)
        ggATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAaccac                                                                                             >  1:3318966/1‑100 (MQ=255)
         gATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAaccacc                                                                                            <  1:1875423/100‑1 (MQ=255)
         gATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAaccacc                                                                                            <  1:1887603/100‑1 (MQ=255)
         gATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAaccacc                                                                                            >  2:4078328/1‑100 (MQ=255)
           tGCCTGAGGTGCGGATATGGCGGTTAGGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAAccacca                                                                                           <  2:319910/99‑1 (MQ=255)
           tGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAg                                                                                          >  2:2443140/1‑100 (MQ=255)
            gCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGa                                                                                         <  1:3654792/100‑1 (MQ=255)
             ccTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGAc                                                                                        >  1:1035118/1‑100 (MQ=255)
              cTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACg                                                                                       >  1:907708/1‑100 (MQ=255)
                  ggTGCGGATATAGCGTTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTAGCGCGAACCACCAGACGGAAg                                                                                   <  2:613816/100‑1 (MQ=255)
                  ggTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAg                                                                                   >  2:3831357/1‑100 (MQ=255)
                    tGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTg                                                                                 <  1:3360003/100‑1 (MQ=255)
                    tGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTg                                                                                 >  1:3164676/1‑100 (MQ=255)
                    tGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTg                                                                                 >  1:2117163/1‑100 (MQ=255)
                    tGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTg                                                                                 <  1:720637/100‑1 (MQ=255)
                    tGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTg                                                                                 <  2:2121460/100‑1 (MQ=255)
                    tGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTACATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGacctg                                                                                 >  2:1203689/1‑96 (MQ=255)
                       ggATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACt                                                                              <  1:4048000/100‑1 (MQ=255)
                       ggATATAGCGGTTAAGACCTTCACCGGCATCCGGCGCAAAGTTCCATGCCCGCCAGACCATCCGGCCTCCAGTCTCACGAACCACCAGACGGAAGCGACt                                                                              >  2:1060513/1‑100 (MQ=25)
                        gATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTg                                                                             <  1:1383918/100‑1 (MQ=255)
                        gATATAGCGGTTAAGACCTTCACCGGCATCCGGCGCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGCGACTg                                                                             >  2:1047288/1‑100 (MQ=255)
                          tataGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGcc                                                                           >  1:1124136/1‑100 (MQ=255)
                          tataGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGcc                                                                           >  2:231837/1‑100 (MQ=255)
                            taGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCt                                                                         >  2:3031386/1‑100 (MQ=255)
                             aGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCt                                                                         <  2:3546831/99‑1 (MQ=255)
                              gCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTgg                                                                       >  1:3550794/1‑100 (MQ=255)
                              gCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTgg                                                                       >  1:3348245/1‑100 (MQ=255)
                              gCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTgg                                                                       <  2:3625433/100‑1 (MQ=255)
                              gCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTgg                                                                       >  2:709718/1‑100 (MQ=255)
                                 gTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGgtc                                                                     >  1:2017016/1‑99 (MQ=255)
                                      gACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATACGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTc                                                               >  1:166859/1‑100 (MQ=255)
                                        ccTTCACCGGCATCCGGCTCAATGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCCCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGa                                                             >  2:2477316/1‑100 (MQ=255)
                                        ccTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGa                                                             >  2:308438/1‑100 (MQ=255)
                                         cTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAg                                                            <  2:2017003/100‑1 (MQ=255)
                                         cTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAg                                                            <  1:3969867/100‑1 (MQ=255)
                                          ttCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAgt                                                           <  2:3680103/100‑1 (MQ=255)
                                           tCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAgtg                                                          <  1:2194190/100‑1 (MQ=255)
                                           tCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAgtg                                                          >  1:575957/1‑100 (MQ=255)
                                           tCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAgtg                                                          <  1:3500801/100‑1 (MQ=255)
                                           tCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAgtg                                                          >  2:1209739/1‑100 (MQ=255)
                                              ccGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGa                                                       <  2:459152/100‑1 (MQ=255)
                                              ccGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGa                                                       >  1:178017/1‑100 (MQ=255)
                                               cGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGat                                                      >  1:3805544/1‑100 (MQ=255)
                                                 gCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAgtg                                                          <  2:485043/94‑1 (MQ=255)
                                                 gCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGatat                                                    >  1:3843546/1‑100 (MQ=255)
                                                   aTCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTg                                                  <  1:2037710/100‑1 (MQ=255)
                                                     ccGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCt                                                >  1:4054496/1‑100 (MQ=255)
                                                         cTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTAc                                            >  1:1664965/1‑100 (MQ=255)
                                                           cAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGt                                          >  2:2697584/1‑100 (MQ=255)
                                                             aaGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTgg                                        <  1:3189191/100‑1 (MQ=255)
                                                              aGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCCCCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGt                                       <  2:610801/100‑1 (MQ=255)
                                                              aGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGt                                       <  2:3810133/100‑1 (MQ=255)
                                                               gTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTa                                      >  1:170977/1‑100 (MQ=255)
                                                                ttacggggccGCCAGAGGATCGGGCCGTCAGGATCACGATCCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGAGAGTGCTGTACGTgg                                        <  2:1688696/89‑1 (MQ=255)
                                                                ttCCATGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAg                                     <  1:502322/100‑1 (MQ=255)
                                                                ttCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAg                                     <  1:3407627/100‑1 (MQ=255)
                                                                ttCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAg                                     >  2:2777368/1‑100 (MQ=255)
                                                                 tCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGt                                    <  1:2478786/100‑1 (MQ=255)
                                                                   cATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTCCGTGGTAGTGa                                  >  2:1709406/1‑100 (MQ=255)
                                                                     tGCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGAcc                                <  2:201688/100‑1 (MQ=255)
                                                                     tGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGAcc                                >  1:771543/1‑100 (MQ=255)
                                                                      ggccGCCAGACCAGCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcg                               >  1:2783815/3‑100 (MQ=255)
                                                                      gCCCGCCAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcg                               >  2:706776/1‑100 (MQ=255)
                                                                      gCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcg                               >  1:3511482/1‑100 (MQ=255)
                                                                      gCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcg                               >  1:416121/1‑100 (MQ=255)
                                                                       cccGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCATGGTCGTCTTCGAGTGTGATATTGCTGTCCGTGGTGGTGACcgc                              >  1:1795216/1‑100 (MQ=255)
                                                                        ccGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcgct                             <  1:1174140/100‑1 (MQ=255)
                                                                            cAGACCATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTTACcgcttgcg                         >  1:2886667/1‑100 (MQ=255)
                                                                            cAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcgcttgcg                         >  1:1201738/1‑100 (MQ=255)
                                                                              gACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcgcttgcgct                       <  2:151010/100‑1 (MQ=255)
                                                                                ccATCCGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcgcttgcgcttg                     >  1:2677825/1‑100 (MQ=255)
                                                                                 cATCCGGCCTCCAGTATCACGATCCACCATACGGAAGTGACTGCCGTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACcgcttgcgctt                      <  2:3326453/98‑1 (MQ=255)
                                                                                   tCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGtct                  >  1:94407/1‑100 (MQ=255)
                                                                                    ccGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGCGGTAGTGACCGCTTGCGCTTGtct                  >  2:3359901/1‑99 (MQ=255)
                                                                                    ccGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGtctc                 >  1:2685944/1‑100 (MQ=255)
                                                                                     cGGCCTTCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTcc                >  2:2961861/1‑100 (MQ=255)
                                                                                     cGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTcc                >  2:904628/1‑100 (MQ=255)
                                                                                      ggCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCg               <  2:2877498/100‑1 (MQ=255)
                                                                                        ccTTCAGTATCCCGAACCACCAGAGGGGAGTGACTGCCCTGGTCGTCCTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCggg             <  2:895631/100‑1 (MQ=255)
                                                                                        ccTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCggg             <  2:3130345/100‑1 (MQ=255)
                                                                                        ccTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCggg             <  2:575952/100‑1 (MQ=255)
                                                                                          ttCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTg           >  1:2435274/1‑100 (MQ=255)
                                                                                           tCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGa          >  2:3980651/1‑100 (MQ=255)
                                                                                           tCAGTATCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGAGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGa          >  1:3545912/1‑100 (MQ=255)
                                                                                            cAGTATCACGAACCACCAGACGGCAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGCGTGaa         >  2:2878142/1‑100 (MQ=255)
                                                                                             aGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGaaa        >  2:304665/1‑100 (MQ=255)
                                                                                              gTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAg       <  2:2992525/100‑1 (MQ=255)
                                                                                              gTAGCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTGGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAg       <  2:3682984/100‑1 (MQ=255)
                                                                                                aTCGCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGc     >  1:1086000/1‑100 (MQ=255)
                                                                                                 tCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGcc    >  1:2117587/1‑100 (MQ=255)
                                                                                                  cACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGccc   <  1:40457/100‑1 (MQ=255)
                                                                                                   aCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGcccc  <  1:3990008/100‑1 (MQ=255)
                                                                                                   aCGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGcccc  <  1:1331639/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GTCTGTACGGATGCCTGAGGTGCGGATATAGCGGTTAAGACCTTCACCGGCATCCGGCTCAAAGTTCCATGCCCGCCAGACCATCCGGCCTTCAGTATCACGAACCACCAGACGGAAGTGACTGCCCTGGTCGTCTTCGAGTGTGATATTGCTGTACGTGGTAGTGACCGCTTGCGCTTGTCTCCGGGTGAAAGGCCCC  >  NC_000913/265319‑265517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A