Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I0 R1
|
312 |
170.3 |
8276235 |
93.7% |
7754832 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,783,402 |
A→G |
53.9% |
V87A (GTC→GCC) |
gpsA ← |
glycerol‑3‑phosphate dehydrogenase (NAD+) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,783,402 | 0 | A | G | 53.9%
| 63.4
/ 265.1
| 211 | V87A (GTC→GCC) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Reads supporting (aligned to +/- strand): ref base A (58/39); new base G (66/47); total (125/86) |
| Fisher's exact test for biased strand distribution p-value = 8.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 |
Only 100 of 212 total aligned reads displayed.
AACAGACGTCCGGTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGCACATCGGGG > NC_000913/3783303‑3783500
|
aaCAGACGTCCGGTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGa > 1:734309/1‑100 (MQ=255)
aGACGTCCGGTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCAt > 2:3143740/1‑100 (MQ=255)
ccGGTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCCCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTgg > 2:3220576/1‑100 (MQ=255)
ggTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGt < 2:2741349/100‑1 (MQ=255)
gTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTa > 2:3309701/1‑100 (MQ=255)
ttCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTacg > 1:3949227/1‑100 (MQ=255)
cGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTacgacg > 1:646066/1‑100 (MQ=255)
cGCTGCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTacgacg < 1:355777/100‑1 (MQ=255)
gCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACAAGGCTGGGTacgacga > 1:4068592/1‑100 (MQ=255)
tCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTAcgacgacga > 1:3160721/1‑100 (MQ=255)
ccAGCCCTTTGGTCGCTCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACgag > 2:2615217/1‑100 (MQ=255)
cAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACgaga > 1:190344/1‑100 (MQ=255)
cAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACgaga < 2:191390/100‑1 (MQ=255)
aGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGaa > 2:874621/1‑100 (MQ=255)
aGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGCCgaga > 2:2095996/1‑99 (MQ=255)
gCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAat > 2:3118695/1‑100 (MQ=255)
gCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAat < 2:132127/100‑1 (MQ=255)
cccTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAata < 2:2204953/100‑1 (MQ=255)
ccTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAatat > 1:2571171/1‑100 (MQ=255)
cTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTTATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATAtt < 1:1011334/100‑1 (MQ=255)
cTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATAtt > 1:1363255/1‑100 (MQ=255)
tGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACg > 1:4094181/1‑100 (MQ=255)
gggcGCCCACACCAGTCGCGCATCAGGACGCATCAGTGGTTTAATCTGGAGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACgg < 1:2359027/97‑1 (MQ=255)
gTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACggc > 1:1689544/1‑100 (MQ=255)
cGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACggctg > 2:2010178/1‑100 (MQ=255)
cGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACggctg > 1:3108468/1‑100 (MQ=255)
cGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACggct > 2:1203849/1‑99 (MQ=255)
cGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACggctg < 2:74858/100‑1 (MQ=255)
cGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACggctg < 2:3017717/100‑1 (MQ=255)
cGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACggctg < 2:646060/100‑1 (MQ=255)
cccACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACggctgg > 2:4101259/1‑99 (MQ=255)
cacaCCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCCCCAAAGACATGGCTGGGTACGACGACGAGAATATTACGgctggctg > 2:2999355/1‑100 (MQ=255)
cacCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGcc > 1:2042189/1‑100 (MQ=255)
ccAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAg > 2:3908265/1‑100 (MQ=255)
gACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAgcgc < 2:1397657/100‑1 (MQ=255)
cgcATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTg < 2:11337/100‑1 (MQ=255)
cgcATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTg > 1:1247540/1‑100 (MQ=255)
gcATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTgg < 2:3618443/100‑1 (MQ=255)
caacAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCCAAGGCATGGCTGGGTACGACGACGAGAATATTCCGGCTGGCTGCCAGCGCAGTgg < 1:2956139/96‑1 (MQ=255)
aTCAGGACGCGTCAGTGGTTTAAGCTGGCGCAGCACTTCACCAAGGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCg < 2:1234239/100‑1 (MQ=255)
tCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCga > 1:2256868/1‑100 (MQ=255)
tCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCga < 1:1294248/100‑1 (MQ=255)
cAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCGTGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCgag < 1:1502345/100‑1 (MQ=255)
cAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCgag < 1:1855704/100‑1 (MQ=255)
aGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCgaga > 2:351906/1‑100 (MQ=255)
aGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCgaga > 2:571226/1‑100 (MQ=255)
ggACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGAt > 1:1135912/1‑100 (MQ=255)
gACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATc < 1:2061304/100‑1 (MQ=255)
cGCATCAGTGGTTTAATCTGGCGCAGCACGTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGc < 2:542664/100‑1 (MQ=255)
cGCATCAGTGGTTTAACCGGGCGCAGCACTACACCAAAGGCATGGCTGAGTCCGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCg > 2:513856/1‑93 (MQ=255)
gCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCt > 2:3832572/1‑100 (MQ=255)
cATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCtt > 2:2239083/1‑100 (MQ=255)
cATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCtt > 1:434810/1‑100 (MQ=255)
cATCAGAGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGCCTGGGTACGACGACGAACATATCACGGCCAGCTGCCAGCGCAGTGGCAAGATcac > 2:1271796/1‑96 (MQ=255)
aTCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCttt < 2:3680644/100‑1 (MQ=255)
cAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCa > 1:3284628/1‑100 (MQ=255)
cAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCa > 1:1113015/1‑100 (MQ=255)
aGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCaa > 1:1353292/1‑100 (MQ=255)
aGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCaa < 1:2814372/100‑1 (MQ=255)
aGTGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCaa > 2:3982150/1‑100 (MQ=255)
gTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAg > 1:2090170/1‑100 (MQ=255)
tGGTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGa < 2:2647902/100‑1 (MQ=255)
ggTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAAAATATTACGGCTGGCTGCAAGCGCAGTGGCGAGATCGCTTTCAAGAt > 1:3078950/1‑100 (MQ=255)
ggTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGAt > 1:2926273/1‑100 (MQ=255)
gTTTAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATg > 2:1637342/1‑100 (MQ=255)
gTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGAt > 2:1800728/1‑99 (MQ=255)
gTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATg > 1:951300/1‑100 (MQ=255)
gTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATg > 2:3766598/1‑100 (MQ=255)
tttAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATgg < 1:2183043/100‑1 (MQ=255)
tttAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATgg < 1:548365/100‑1 (MQ=255)
tAATCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTAAGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCAAGATAGCTTTAAAGATGGAg > 1:342965/1‑100 (MQ=255)
tAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAg < 1:3816183/100‑1 (MQ=255)
aaTCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGc > 1:3721966/1‑100 (MQ=255)
aaTCTGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGc < 1:3513465/100‑1 (MQ=255)
aTCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCg > 1:2665227/1‑100 (MQ=255)
aTCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCg > 2:3073466/1‑100 (MQ=255)
aTCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCg < 1:3676448/100‑1 (MQ=255)
tCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGt > 2:1336695/1‑100 (MQ=255)
tGGCGCAGCACTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTAt < 1:3908291/100‑1 (MQ=255)
tGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTAt > 1:3139564/1‑100 (MQ=255)
ggCGCAGCACTTCACCAAAGACTTGACTGGGTACGACGACAAGAATATAACGGCAGGCCGCCAGCGAAGTGACAAGATCCATTTGAAGATGGacgtcatc > 2:3636089/1‑93 (MQ=255)
gcagcaCTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCggg > 1:499830/1‑100 (MQ=255)
gcagcaCTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCggg < 2:1668608/100‑1 (MQ=255)
gcaCTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGaaa > 1:3010712/1‑100 (MQ=255)
gcaCTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGaaa < 1:1939037/100‑1 (MQ=255)
aCTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAg > 1:374972/1‑100 (MQ=255)
aCTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAg > 2:2944249/1‑100 (MQ=255)
aCTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGGCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAg < 2:826096/100‑1 (MQ=255)
aCTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAg > 2:2415428/1‑100 (MQ=255)
cTTCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTTCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAgg > 1:3854243/1‑100 (MQ=255)
ttCACCAAAGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGc > 1:881902/1‑100 (MQ=255)
tCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGca > 2:1990588/1‑100 (MQ=255)
cACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGca < 1:3643735/99‑1 (MQ=255)
aCCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGcaca < 2:3813797/100‑1 (MQ=255)
ccAAAGACATGGCTGGGTACGACGACGAGACCATTACGGCTGGCTCGCAGCGCAGTGCCGAGAACGCTATCAAGCAGGAGCGGACCGGGAAAAGGcac > 2:44847/1‑98 (MQ=255)
ccAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTACCGGGAAAAGGcaca > 2:742394/1‑99 (MQ=255)
cAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGCACATc > 2:3301026/1‑100 (MQ=255)
aaaGGCATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGCACATCg > 1:2822163/1‑100 (MQ=255)
aaaGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGCACATCg > 2:3438148/1‑100 (MQ=255)
gACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGCACATCggg < 1:3244852/99‑1 (MQ=255)
|
AACAGACGTCCGGTTTCCGCTTCCAGCCCTTTGGTCGCCCACACCAGACGCGCATCAGGACGCATCAGTGGTTTAATCTGGCGCAGCACTTCACCAAAGACATGGCTGGGTACGACGACGAGAATATTACGGCTGGCTGCCAGCGCAGTGGCGAGATCGCTTTCAAGATGGAGCGTATCGGGAAAAGGCACATCGGGG > NC_000913/3783303‑3783500
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
