Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F56 I0 R1	312	170.3	8276235	93.7%	7754832	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,478,879	T→C	28.3%	V136A (GTT→GCT)	rraB →	protein inhibitor of RNase E

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,478,879	0	T	C	28.3%	204.5 / 102.3	141	V136A (GTT→GCT)	rraB	protein inhibitor of RNase E
Reads supporting (aligned to +/- strand): ref base T (42/59); new base C (13/27); total (55/86)
Fisher's exact test for biased strand distribution p-value = 3.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01

Only 100 of 146 total aligned reads displayed.

AATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAAC  >  NC_000913/4478780‑4478978

 aTTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGtt                                                                                                    >  1:2686513/1‑100 (MQ=255)

   ttGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCg                                                                                                  >  1:3436457/1‑100 (MQ=255)

   ttGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCg                                                                                                  >  1:3986902/1‑100 (MQ=255)

    tGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGc                                                                                                 <  2:2077262/100‑1 (MQ=255)

     gACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGcc                                                                                                <  2:2652846/100‑1 (MQ=255)

     gACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGcc                                                                                                <  2:1012786/100‑1 (MQ=255)

      aCGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCa                                                                                               >  2:1313215/1‑100 (MQ=255)

      aCGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCa                                                                                               <  2:1684813/100‑1 (MQ=255)

       cGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCAc                                                                                              <  2:523908/100‑1 (MQ=255)

       cGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCAc                                                                                              <  1:1307116/100‑1 (MQ=255)

           gAGTACGACGGATGGGGCACTTACTTTGTAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAAt                                                                                          <  2:233335/100‑1 (MQ=255)

            aGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAAtt                                                                                         >  1:4072964/1‑100 (MQ=255)

             gTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTa                                                                                        >  1:3960566/1‑100 (MQ=255)

               acgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAg                                                                                      >  1:715905/1‑100 (MQ=255)

               acgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAg                                                                                      <  2:3056383/100‑1 (MQ=255)

                cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATTAAGACGATGTCGGAGTGCGCCACTAATTaatc                                                                                     >  1:608789/1‑98 (MQ=255)

                cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGc                                                                                     >  1:367553/1‑100 (MQ=255)

                cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGc                                                                                     >  1:1317357/1‑100 (MQ=255)

                cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGc                                                                                     <  2:880522/100‑1 (MQ=255)

                cgacgGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGc                                                                                     >  2:1410069/1‑100 (MQ=255)

                    ggATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAg                                                                                 <  1:1537930/100‑1 (MQ=255)

                    ggATGGGGCACTTACTTTGAACATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGACACTAATTAAGCGTAg                                                                                 <  2:3028853/100‑1 (MQ=255)

                     gATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAgc                                                                                >  1:3867708/1‑100 (MQ=255)

                     gATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAgc                                                                                <  2:3212301/100‑1 (MQ=255)

                     gATGGGGCACTTACTTTGAAGATACTAACGGCGAACATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAg                                                                                 <  1:2900145/99‑1 (MQ=255)

                      aTGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAgcg                                                                               <  1:527290/100‑1 (MQ=255)

                      aTGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAgcg                                                                               >  1:2236428/1‑100 (MQ=255)

                       tGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAgcgc                                                                              <  1:302071/100‑1 (MQ=255)

                         gggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGAGGGAGTTCGCCACTAATTAAGCGTAGCGCAt                                                                            <  2:2712091/100‑1 (MQ=255)

                         gggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCAt                                                                            >  1:791743/1‑100 (MQ=255)

                         gggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCAt                                                                            >  2:260220/1‑100 (MQ=255)

                          ggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAgagatcg                                                                           >  2:3884200/1‑94 (MQ=255)

                          ggCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCCTc                                                                           <  1:2074640/100‑1 (MQ=255)

                            cACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAg                                                                         >  2:3674115/1‑100 (MQ=255)

                             acttacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAgg                                                                        <  1:1965798/100‑1 (MQ=255)

                              cttacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGc                                                                       <  1:3838545/100‑1 (MQ=255)

                               ttacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGc                                                                       <  2:325356/99‑1 (MQ=255)

                                tacttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGAGTAGAGCATCAGGacc                                                                     >  1:1787507/1‑100 (MQ=255)

                                 acttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCa                                                                    <  2:1408052/100‑1 (MQ=255)

                                  cttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAg                                                                   <  1:558073/100‑1 (MQ=255)

                                  cttTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAg                                                                   <  1:650162/100‑1 (MQ=255)

                                   tttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAgg                                                                  <  2:1611692/100‑1 (MQ=255)

                                    ttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGt                                                                 <  1:740001/100‑1 (MQ=255)

                                    ttGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGt                                                                 <  1:1464702/100‑1 (MQ=255)

                                     tGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGt                                                                 <  2:2807990/99‑1 (MQ=255)

                                     tGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTa                                                                <  1:1084845/100‑1 (MQ=255)

                                       aaGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGt                                                              <  1:1201146/100‑1 (MQ=255)

                                       aaGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGt                                                              >  1:198319/1‑100 (MQ=255)

                                         gATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTc                                                            <  2:686002/100‑1 (MQ=255)

                                          aTCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTcc                                                           <  1:1703277/100‑1 (MQ=255)

                                           tCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCt                                                          >  1:1649240/1‑100 (MQ=255)

                                           tCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCt                                                          <  1:3106733/100‑1 (MQ=255)

                                            ccTAAGGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTg                                                         <  2:1283620/100‑1 (MQ=255)

                                            ccTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTg                                                         >  1:3433565/1‑100 (MQ=255)

                                             cTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGc                                                        <  2:3960540/100‑1 (MQ=255)

                                              tAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCa                                                       <  2:1872510/100‑1 (MQ=255)

                                               aaCGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCaa                                                      >  2:1705724/1‑100 (MQ=255)

                                                aCGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAAc                                                     >  1:2146568/1‑100 (MQ=255)

                                                 cGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAAcc                                                    >  1:608077/1‑100 (MQ=255)

                                                 cGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAAcc                                                    <  2:2686497/100‑1 (MQ=255)

                                                    cGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTgg                                                 <  2:1491342/100‑1 (MQ=255)

                                                    cGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTgg                                                 <  2:1508541/100‑1 (MQ=255)

                                                    cGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTgg                                                 <  1:3000555/100‑1 (MQ=255)

                                                     gAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGt                                                <  2:214702/100‑1 (MQ=255)

                                                     gAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGt                                                <  1:3205064/100‑1 (MQ=255)

                                                      aaGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTg                                               <  1:2418308/100‑1 (MQ=255)

                                                           ggCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAAttt                                          >  2:2306005/1‑100 (MQ=255)

                                                            gCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTg                                         >  1:678215/1‑100 (MQ=255)

                                                            gCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTg                                         <  2:3424729/100‑1 (MQ=255)

                                                            gCGACGATGAACATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTg                                         <  2:1115507/100‑1 (MQ=255)

                                                                  aTGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGccc                                   <  2:3776902/100‑1 (MQ=255)

                                                                   tGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCg                                  >  2:597918/1‑100 (MQ=255)

                                                                   tGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCg                                  >  2:896016/1‑100 (MQ=255)

                                                                   tGAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCg                                  >  2:2876527/1‑100 (MQ=255)

                                                                    gAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCgg                                 <  2:3670374/100‑1 (MQ=255)

                                                                    gAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCgg                                 <  2:3648376/100‑1 (MQ=255)

                                                                    gAAGATTTTGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCgg                                 >  1:2880281/1‑100 (MQ=255)

                                                                     aaGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGa                                >  1:2658408/1‑100 (MQ=255)

                                                                         ttttGTCGATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAg                            >  1:700089/1‑100 (MQ=255)

                                                                          tttGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAgg                           <  2:2146555/100‑1 (MQ=255)

                                                                            tGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCa                         >  1:2376535/1‑100 (MQ=255)

                                                                              tCGATGAAGACGATGACGGAGTTCGCCACTAATTAATCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCAtt                       <  1:2897705/100‑1 (MQ=255)

                                                                               cGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTc                      <  1:1923635/100‑1 (MQ=255)

                                                                                gATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCa                     >  1:1047597/1‑100 (MQ=255)

                                                                                gATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCa                     <  1:990225/100‑1 (MQ=255)

                                                                                gATGAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCa                     <  1:1410078/100‑1 (MQ=255)

                                                                                   gAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCNTTCATg                   <  2:3411050/99‑1 (MQ=255)

                                                                                   gAAGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGt                  >  1:4092228/1‑100 (MQ=255)

                                                                                    aaGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTc                 <  2:3597330/100‑1 (MQ=255)

                                                                                    aaGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTc                 <  1:2034878/100‑1 (MQ=255)

                                                                                     aGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTca                <  2:1030019/100‑1 (MQ=255)

                                                                                     aGACGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGt                  >  1:2133518/1‑98 (MQ=255)

                                                                                       aCGATGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTGCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTcaca              <  1:40192/100‑1 (MQ=255)

                                                                                          aTGACGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATcc           >  1:737497/1‑100 (MQ=255)

                                                                                           tGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGGGAATTTATCGCCCGGATAAGGCAGTCATGTCACATCCg          >  2:784527/1‑100 (MQ=255)

                                                                                              cGGAGCTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCa       >  1:2253234/1‑100 (MQ=255)

                                                                                               ggAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCAt      <  2:2566514/100‑1 (MQ=255)

                                                                                                  gTTCGCCACTAATTAAGCGTAGCGCATCATGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATaaa   <  2:3591072/100‑1 (MQ=255)

                                                                                                   ttCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAAc  <  2:3796867/100‑1 (MQ=255)

                                                                                                   ttCGCCACGAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAAc  <  1:3486977/100‑1 (MQ=255)

AATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAGGCATTCATGTCACATCCGGCATAAAC  >  NC_000913/4478780‑4478978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A