Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I0 R1
|
175 |
91.2 |
4812830 |
94.5% |
4548124 |
99.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,950,467 |
G→T |
42.1% |
intergenic (+47/‑40) |
ilvL → / → ilvX |
ilvG operon leader peptide/uncharacterized protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,950,467 | 0 | G | T | 42.1%
| 74.9
/ 127.7
| 109 | intergenic (+47/‑40) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (27/36); new base T (17/29); total (44/65) |
| Fisher's exact test for biased strand distribution p-value = 5.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
Only 100 of 111 total aligned reads displayed.
GGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATG > NC_000913/3950369‑3950562
|
ggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCggg‑gt > 1:1862817/1‑99 (MQ=255)
attattATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTtttt < 1:1286279/100‑1 (MQ=255)
tattatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTtttttt > 2:2329400/1‑100 (MQ=255)
tattatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑‑G‑GGtttttttt < 1:1334372/100‑1 (MQ=255)
attatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑Gtttttttt < 2:1325464/100‑1 (MQ=255)
tatCCCGCCGTTCGGGGCTACCCTTCGACGAGGAAAGGCTTAGAGATGAAGCCGTTACTTAATAAGACCCCCTCACCGAAATGTCCGGG‑TTTTTttgttg < 2:2116350/100‑1 (MQ=255)
tatCCCACCGTGCGGGGTTGCACTTGGACGAGGAAAGGCTTAGGGATCAAGCCTTAACTAACTAATACCCCCGCATTGAAATGTCCGTG‑GTGTTTTTTTg < 2:1154802/100‑1 (MQ=255)
tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTg < 1:1264336/100‑1 (MQ=255)
tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTg < 1:1308205/100‑1 (MQ=255)
tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTg < 2:2289185/100‑1 (MQ=255)
tatCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GGTTTTTTTTg < 2:849301/100‑1 (MQ=255)
atCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGa > 1:375311/1‑100 (MQ=255)
atCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGa > 1:1060948/1‑100 (MQ=255)
cccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGAcc < 1:1696245/100‑1 (MQ=255)
cccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGAcc < 1:203734/100‑1 (MQ=255)
cccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGAc > 1:767340/1‑99 (MQ=255)
cccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GG‑GTTTTTTTTTGACCt > 1:348861/1‑100 (MQ=255)
ccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCt < 1:1002564/100‑1 (MQ=255)
ccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCt > 1:384040/1‑100 (MQ=255)
ccACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCt > 1:2377644/1‑100 (MQ=255)
cACGGTGGGGGGTTTCAATTTGACGAGGAAGGGGTTAGACGTGAAGCCGTAAAGAACTTAGGCCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCtt < 2:943571/100‑1 (MQ=255)
cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCt > 1:1583606/1‑99 (MQ=255)
cACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCCCACCGAAAGGTCC‑GG‑GTTTTTTTTTGACCTTa > 1:607113/1‑100 (MQ=255)
gTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTaaaa < 1:1206867/100‑1 (MQ=255)
cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACa > 1:1478020/1‑100 (MQ=255)
cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACa < 1:910097/100‑1 (MQ=255)
ggggTTACACTTAGCCGAGGGAAGGGTTAGAGATCAAGCCTAAACAAACTAAGACCCCCGCACCGAAAGGTCCGGGTTTTTTTTTTTGACCTTAAAAACa < 1:1762429/100‑1 (MQ=255)
ggggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACAt > 1:2121898/1‑100 (MQ=255)
ggggATGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCGTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACa < 1:494849/99‑1 (MQ=255)
gggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACa < 1:2011724/98‑1 (MQ=255)
gggCTGCACTCGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATa < 2:1574913/100‑1 (MQ=255)
gCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTTAACTTaaaaaaaaaaa > 1:212847/1‑94 (MQ=255)
gCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAAc > 2:692860/1‑100 (MQ=255)
tGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAAcc < 1:829579/99‑1 (MQ=255)
gCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCga > 1:1196522/1‑100 (MQ=255)
cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GG‑GGTTTTTTTTGACCTTAAAAACATAACCgagg < 1:2327318/100‑1 (MQ=255)
cTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCgagga > 1:553976/1‑100 (MQ=255)
tGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGc < 2:2385266/100‑1 (MQ=255)
ggACGAGGAAAGGCTCAGAGATCGAGCCTTAACGAACTAAGACACCCGCACCGAAAGGTCC‑GG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa < 1:1062418/99‑1 (MQ=255)
gACGAGGAAAGGTTTAAAGATCACGCGTTAGGGAAATAAAATGCCCGGACCGAAAGGTCAGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa < 2:722779/99‑1 (MQ=255)
gACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACGAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTGTGACCTTAAAAACATAACCGAGAAGCa > 2:344404/1‑99 (MQ=255)
aGGGAAGGCCTAGTGATAAAGCCTGAGTGAAGCAAGCCACACGAAACGACAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGAc < 2:703334/98‑1 (MQ=255)
aGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACaa > 1:1462545/1‑100 (MQ=255)
aGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCC‑GG‑GGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAt > 2:150367/1‑100 (MQ=255)
aGGAAAGGCTGAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCa < 1:241802/95‑1 (MQ=255)
ggAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAt > 1:1593422/1‑100 (MQ=255)
gagaGGATTAGAGACCAAGCGTGAGGGGACGAAGGCGCCCGCACAGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg < 1:815292/97‑1 (MQ=255)
gAAATGCTTAGAGATCAAGGCTTAACGAAATAAGAACCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg < 1:792804/100‑1 (MQ=255)
gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCTAGGAGCAGACAATg > 2:1361065/1‑100 (MQ=255)
gAAAGGCTTAGAGACCAAGCCGTAGCGACCGAAGACCCCCGCACAGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg < 1:2099518/100‑1 (MQ=255)
aaaGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGa > 1:2308521/1‑100 (MQ=255)
gggttAGAGATCAAGCCTTAACGAACTAAGTCCCCCGCACCGAAAGGACCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg < 2:2372746/93‑1 (MQ=255)
ggCTTAGAGATCAATCCTTACCGAACTGAGGCCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAAt < 2:714037/99‑1 (MQ=255)
ggCTTAAAGATCAAGCCTGAAGGAAGGAAGACCCCCGCACCGAAAGGGCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATa < 1:466358/100‑1 (MQ=255)
tttAGAGACCAGGCCTGAACGAACTAGGACCCCGGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAAt < 1:1366162/92‑1 (MQ=255)
cTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc > 1:3535/1‑100 (MQ=255)
ttAGAGATCAAGCCTTAACGAACTAAGACCACCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATg < 1:219805/93‑1 (MQ=255)
tAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GGTTTTTTTTAAAATTAAAAACATAACCGAGGAGCAGACAATGAATAAc < 2:357030/98‑1 (MQ=255)
tAGAGATCAAGCCGTAACGGACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAAc < 1:816537/98‑1 (MQ=255)
gagaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGca > 2:1624090/1‑100 (MQ=255)
gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGcaca > 1:1285731/1‑100 (MQ=255)
gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTTACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGcaca > 2:899103/1‑100 (MQ=255)
aTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaa > 1:1393021/1‑100 (MQ=255)
tCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTTACTTTAAAAACTTAACCGAGGAGCATACAATGAATAACAGcaca > 2:182201/1‑98 (MQ=255)
tCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaa > 2:1759965/1‑100 (MQ=255)
tCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGGCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGGAAACAATGAATAACAGAACcaa > 1:1917329/1‑100 (MQ=255)
cAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACaaaa > 1:1715419/1‑100 (MQ=255)
cAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTCCTTTTTTGACCTCAAAACCATAACCGAGCAGCAGACCATGAATAACAGCACaaa > 1:57292/1‑99 (MQ=255)
gCCTTAACGAATTTATACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAAt < 2:1057451/98‑1 (MQ=255)
ccTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCt > 1:2372932/1‑100 (MQ=255)
cTTAACGAACTAAGACCCCCGCGCCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTg < 1:1659619/100‑1 (MQ=255)
ttAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATGACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGt > 1:1171729/1‑100 (MQ=255)
ttAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGt > 1:1245761/1‑100 (MQ=255)
tAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGtt > 1:1937079/1‑100 (MQ=255)
cGAACTTAGCCCCTCGCACAGAAAGGTCCGGG‑GTATTTTTTTGACCTTAAAAACATAACCGAGGAGCAAACAATGAATAACAGCACAAAATTCTGTTtc < 1:2386109/99‑1 (MQ=255)
gaacatagtcccccGCACGGGAGGGGCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAACAACAGCACAAAATTCTGTTtc < 1:526491/89‑1 (MQ=255)
aCTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa < 1:1140405/100‑1 (MQ=255)
cTAAGTCCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCaa < 1:293853/99‑1 (MQ=255)
cTAAGACCCCCGCACCGAAGGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAg < 1:2314322/100‑1 (MQ=255)
cTAAGACCCCCGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAg > 1:9776/1‑100 (MQ=255)
ttggACGCCTGCAACGAAAGGGCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTtctc < 2:820760/93‑1 (MQ=255)
cccccGCACCGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGAtt < 2:1715399/97‑1 (MQ=255)
cccGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGa > 1:410671/1‑100 (MQ=255)
ccGCACCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAc < 1:913899/100‑1 (MQ=255)
cGCAGCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAgg < 2:2147825/97‑1 (MQ=255)
gcgccgattggTCCGGG‑TTTTTTTGTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgg < 1:420760/91‑1 (MQ=255)
agcGAATGGTCCGGT‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgggg < 2:26527/98‑1 (MQ=255)
aCCGAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgggg < 2:1591872/100‑1 (MQ=255)
ccGAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGa > 1:76411/1‑100 (MQ=255)
gacaGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACggg < 2:1285422/93‑1 (MQ=255)
gAAAGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaac > 1:1709937/1‑100 (MQ=255)
gAAAGGTCCGGG‑GTTTTTTTTTTACCTTAAAAACATAACCGAGGAGAAGACAATAAATAACAGCACAAAATTCTGTTTCTCAAGATTAAGAACGGGaaa > 2:1315955/1‑99 (MQ=255)
gAAAGGTCCGGG‑GTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaac < 1:1598773/100‑1 (MQ=255)
aaaGGTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaact < 1:1529695/100‑1 (MQ=255)
aGGTCCGGG‑GTTTTTTTTTTTTTTTTTAAACATAACCGAGGACCAGACAATGAATAACAGCACAAAATTCTTTTTCTCAAGATTCACGACGGGGaactaa > 1:292940/1‑100 (MQ=255)
ggTCCGGG‑TTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCCGTTTCTCAAGATTCAGGACGGGGaactaac < 2:2380321/100‑1 (MQ=255)
ggTCCGGG‑GTTTTTTTTTGACCTGAAAAACATAACCGAGGAGCAGACAATGAATACCAGCACAAAACTCTGTTTCTCAAGATTCAGGACGGGGaacga < 1:1620459/98‑3 (MQ=255)
tCCGGG‑TTTTTTTTTTGACCTTAACAACATAACCGAGGAGCAGGCAATGAATAACTGCACATAATTCTGTTTCTCAAGATTCAGGCCGGGGaactaac < 2:866245/98‑1 (MQ=255)
cGGG‑GTTTTTTTTTGACCTGAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATg < 1:1238302/100‑1 (MQ=255)
ggg‑gtTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGAAGGGGAACTAACTATg < 2:384037/99‑1 (MQ=255)
|
GGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGG‑GGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATG > NC_000913/3950369‑3950562
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
