mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 11,755 | A→T | 22.5% | L11Q (CTG→CAG) | yaaI ← | UPF0412 family protein |
| RA | 36,231 | T→C | 100% | intergenic (‑69/+40) | caiD ← / ← caiC | carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase |
| RA | 135,281 | A→T | 16.4% | L101Q (CTG→CAG) | speD ← | S‑adenosylmethionine decarboxylase |
| RA | 162,973 | G→A | 100% | C290Y (TGT→TAT) | hrpB → | putative ATP‑dependent helicase |
| JC | 190,553 | Δ14 bp | 100% | coding (680‑693/726 nt) | rpsB → | 30S ribosomal subunit protein S2 |
| RA | 216,568 | C→T | 100% | A146T (GCC→ACC) | yaeF ← | putative lipoprotein |
| RA | 232,196 | G→T | 17.6% | G91C (GGC→TGC) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 236,541 | C→T | 100% | R159* (CGA→TGA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 281,581 | G→A | 24.2% | R135W (CGG→TGG) | yagA ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 343,467 | A→C | 100% | H195P (CAC→CCC) | yahK → | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| RA | 362,884 | A→G | 16.2% | L99S (TTA→TCA) | lacY ← | lactose permease |
| RA | 364,024 | C→T | 15.6% | R761H (CGC→CAC) | lacZ ← | beta‑D‑galactosidase |
| RA | 367,830 | G→A | 18.9% | Y197Y (TAC→TAT) | mhpR ← | mhp operon transcriptional activator |
| RA | 383,477 | G→A | 23.1% | G153G (GGC→GGT) | yaiP ← | putative family 2 glycosyltransferase |
| RA | 407,203 | Δ1 bp | 19.7% | intergenic (+33/‑225) | yaiA → / → aroM | OxyR‑regulated conserved protein/AroM family protein |
| RA | 409,322 | G→T | 57.0% | A233E (GCG→GAG) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
| RA | 428,188 | G→T | 100% | R181L (CGC→CTC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 459,642 | A→G | 18.4% | E252G (GAA→GGA) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 465,181 | C→A | 15.2% | V123F (GTC→TTC) | queC ← | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis |
| RA | 497,139:1 | (T)5→6 | 100% | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| RA | 520,993 | T→G | 100% | V193G (GTC→GGC) | ybbP → | putative ABC transporter permease |
| RA | 529,063 | A→G | 17.8% | pseudogene (424/491 nt) | ybbD → | pseudogene |
| RA | 548,374 | G→A | 47.1% | A6A (GCG→GCA) | ylbE → | NO‑induced DUF1116 protein |
| RA | 575,915 | T→A | 41.7% | pseudogene (911/1040 nt) | nmpC ← | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| RA | 580,851 | G→A | 40.4% | K6K (AAG→AAA) | nohD → | DLP12 prophage; DNA packaging protein |
| RA | 585,077 | C→T | 23.5% | G186E (GGA→GAA) | ompT ← | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b |
| RA | 661,369 | T→C | 24.6% | N4D (AAT→GAT) | ybeF ← | LysR family putative transcriptional regulator |
| RA | 674,180 | G→A | 71.3% | L202L (CTG→TTG) | leuS ← | leucyl‑tRNA synthetase |
| RA | 700,805 | A→T | 100% | C264S (TGC→AGC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 720,946 | C→T | 100% | intergenic (+106/+110) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 740,109 | T→C | 15.3% | F201F (TTT→TTC) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 755,789 | G→A | 49.2% | W77* (TGG→TAG) | sdhD → | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| RA | 759,237 | A→G | 15.8% | T178A (ACC→GCC) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 772,209 | C→A | 100% | T251N (ACC→AAC) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 850,742 | A→G | 59.3% | D98G (GAC→GGC) | ompX → | outer membrane protein X |
| RA | 851,094 | G→A | 21.4% | P502S (CCG→TCG) | opgE ← | OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 874,056 | G→A | 17.3% | E360K (GAA→AAA) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 882,722 | G→A | 100% | R5C (CGC→TGC) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| RA | 894,155 | T→G | 100% | D124E (GAT→GAG) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 905,720 | C→A | 17.8% | L270M (CTG→ATG) | amiD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase, Zn‑dependent; OM lipoprotein |
| RA | 931,952 | C→T | 28.9% | V33V (GTG→GTA) | trxB ← | thioredoxin reductase, FAD/NAD(P)‑binding |
| RA | 975,083 | T→A | 15.7% | D255E (GAT→GAA) | mukF → | chromosome condensin MukBEF, kleisin‑like subunit, binds calcium |
| RA | 1,031,761 | T→C | 47.9% | intergenic (‑49/‑378) | serT ← / → hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
| RA | 1,080,039 | (G)5→4 | 100% | coding (735/1509 nt) | putP → | proline:sodium symporter |
| RA | 1,100,233 | G→A | 100% | intergenic (+39/‑63) | ycdY → / → ycdZ | redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein |
| RA | 1,129,394 | G→C | 18.6% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,143,125 | C→T | 100% | D415N (GAC→AAC) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,172,553 | A→G | 53.6% | I471T (ATC→ACC) | mfd ← | transcription‑repair coupling factor |
| RA | 1,197,739 | A→G | 100% | S167P (TCC→CCC) | ymfE ← | e14 prophage; putative inner membrane protein |
| RA | 1,219,033 | C→T | 35.8% | S17S (TCC→TCT) | ymgF → | inner membrane division septum protein |
| RA | 1,254,980 | A→G | 62.3% | F325L (TTT→CTT) | ycgV ← | putative adhesin |
| RA | 1,292,944 | T→C | 100% | intergenic (‑22/‑583) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,311,830 | A→G | 16.7% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 16.9% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,325,850 | C→T | 48.4% | R369C (CGC→TGC) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,382,820 | T→C | 22.0% | Y292H (TAT→CAT) | ompG → | outer membrane porin G |
| RA | 1,401,844 | A→G | 100% | I471T (ATC→ACC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| RA | 1,407,859 | A→G | 24.6% | intergenic (‑64/‑191) | ydaM ← / → ydaN | diguanylate cyclase, csgD regulator/putative Zn(II) transporter |
| RA | 1,434,459 | C→T | 100% | intergenic (‑235/+499) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,493,774 | A→G | 20.0% | L435L (TTA→TTG) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,501,912 | T→A | 100% | I117I (ATT→ATA) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
| RA | 1,530,076:1 | (A)7→8 | 100% | coding (155/483 nt) | ydcD → | putative immunity protein for RhsE |
| RA | 1,544,201 | A→G | 15.6% | intergenic (‑141/+183) | narU ← / ← yddK | nitrate/nitrite transporter/pseudogene, leucine‑rich protein; putative glycoportein |
| RA | 1,580,094 | C→T | 100% | D233N (GAT→AAT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,602,236 | A→T | 15.8% | Q249H (CAA→CAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,609,555 | Δ1 bp | 18.2% | coding (1126/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,609,561:1 | +C | 19.5% | coding (1120/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,611,964 | T→C | 19.7% | intergenic (‑110/+2) | yneF ← / ← yneG | putative membrane‑bound diguanylate cyclase/DUF4186 family protein |
| RA | 1,665,195:1 | (T)7→8 | 100% | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| RA | 1,681,932 | T→C | 100% | P33P (CCA→CCG) | ydgC ← | GlpM family inner membrane protein |
| RA | 1,707,029 | A→G | 19.9% | V37V (GTA→GTG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,712,306:1 | (T)7→8 | 100% | intergenic (+148/‑463) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,518 | (C)6→5 | 100% | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,728,444 | C→A | 100% | T33N (ACC→AAC) | rnt → | RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
| RA | 1,827,031 | T→A | 100% | D410V (GAT→GTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,946,790 | T→G | 17.0% | G180G (GGT→GGG) | yebB → | DUF830 family protein |
| RA | 1,964,425 | G→C | 17.3% | A209G (GCC→GGC) | flhA ← | putative flagellar export pore protein |
| RA | 1,971,761 | T→C | 16.0% | T311A (ACC→GCC) | tar ← | methyl‑accepting chemotaxis protein II |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,981,712 | C→A | 15.9% | A226S (GCA→TCA) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 1,983,761 | C→T | 100% | E437K (GAA→AAA) | araG ← | L‑arabinose ABC transporter ATPase |
| RA | 1,987,442 | Δ1 bp | 15.1% | intergenic (+14/+65) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 2,050,074 | A→G | 19.4% | S1713G (AGC→GGC) | yeeJ → | putative adhesin |
| RA | 2,055,250 | A→G | 17.0% | S64G (AGC→GGC) | amn → | AMP nucleosidase |
| RA | 2,062,022 | A→C | 44.1% | intergenic (‑89/‑238) | nac ← / → asnV | nitrogen assimilation regulon transcriptional regulator; autorepressor/tRNA‑Asn |
| RA | 2,071,321 | A→G | 100% | intergenic (+110/‑218) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,159,354 | C→T | 15.4% | R323R (CGC→CGT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,161,946 | A→G | 28.7% | A161A (GCA→GCG) | iceT → | putative citrate/iron‑citrate/zinc‑citrate efflux transporter |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,191,432 | C→T | 100% | G72S (GGC→AGC) | yehC ← | putative periplasmic pilin chaperone |
| RA | 2,197,365 | G→A | 23.1% | pseudogene (892/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,210,811 | C→T | 100% | pseudogene (1712/2001 nt) | yehQ → | pseudogene |
| RA | 2,235,656 | T→C | 19.5% | I131T (ATC→ACC) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| RA | 2,278,298 | C→T | 100% | intergenic (‑61/+272) | yejG ← / ← bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,291,084 | A→C | 51.4% | K195N (AAA→AAC) | narP → | response regulator in two‑component regulatory system with NarQ |
| RA | 2,352,993 | T→A | 67.8% | I116N (ATC→AAC) | glpA → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit |
| RA | 2,386,365 | T→A | 20.5% | F169Y (TTC→TAC) | yfbL → | putative M28A family peptidase |
| RA | 2,420,727 | G→A | 24.8% | G36D (GGC→GAC) | yfcG → | GSH‑dependent disulfide bond oxidoreductase |
| RA | 2,436,937 | A→T | 100% | D305E (GAT→GAA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,452,339 | A→G | 38.9% | intergenic (‑3/+17) | yfcS ← / ← yfcU | putative periplasmic pilin chaperone/pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,469,656:1 | (T)7→8 | 100% | coding (526/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,471,300 | T→A | 18.1% | Q73L (CAG→CTG) | yfdK ← | CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,521,967 | C→A | 100% | A171S (GCG→TCG) | xapR ← | transcriptional activator of xapAB |
| RA | 2,541,456 | A→G | 22.1% | I75T (ATT→ACT) | cysW ← | sulfate/thiosulfate ABC transporter permease |
| RA | 2,563,518:1 | (A)5→6 | 100% | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,564,525 | G→A | 100% | M1M (ATG→ATA) † | yffS → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,593,917 | G→A | 27.8% | A648V (GCG→GTG) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,600,288 | C→T | 100% | S128L (TCG→TTG) | gcvR → | transcriptional repressor, regulatory protein accessory to GcvA |
| RA | 2,618,527 | A→T | 15.3% | W84R (TGG→AGG) | hda ← | ATPase regulatory factor involved in DnaA inactivation |
| RA | 2,638,037 | C→A | 18.6% | A206S (GCG→TCG) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,712,402 | A→G | 42.6% | S121S (AGT→AGC) | trmN ← | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| RA | 2,767,670 | C→A | 15.4% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,777,363 | T→C | 28.7% | F83F (TTT→TTC) | yfjZ → | CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,782,883 | G→A | 59.8% | intergenic (‑157/+182) | ypjA ← / ← pinH | adhesin‑like autotransporter/pseudogene, invertase resolvase family |
| RA | 2,786,725 | C→T | 24.9% | pseudogene (329/2253 nt) | ygaQ → | uncharacterized protein; putative enzyme |
| RA | 2,810,756 | G→A | 100% | intergenic (+77/‑14) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,758 | G→A | 60.6% | intergenic (+79/‑12) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,852,356 | T→A | 100% | L74Q (CTG→CAG) | hypD → | hydrogenase maturation protein |
| RA | 2,862,917 | T→G | 18.7% | Y195D (TAC→GAC) | ygbK → | FliA‑regulated DUF1537 family protein |
| RA | 2,867,151 | A→G | 53.6% | F134S (TTT→TCT) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,887,352 | T→A | 100% | intergenic (‑133/+226) | ygcB ← / ← cysH | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| RA | 2,926,036 | A→C | 15.6% | E230A (GAA→GCA) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,926,039 | A→T | 15.7% | Q231L (CAG→CTG) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,926,042 | G→T | 17.1% | C232F (TGC→TTC) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,989,886 | T→A | 34.7% | D5V (GAT→GTT) | yqeL ← | uncharacterized protein |
| RA | 3,041,028 | G→A | 23.0% | R15C (CGT→TGT) | sdhE ← | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
| RA | 3,057,140 | A→G | 16.2% | intergenic (‑191/+38) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 16.4% | intergenic (‑196/+33) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 16.1% | intergenic (‑201/+28) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,128,863 | A→T | 16.7% | I198F (ATC→TTC) | glcC → | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| RA | 3,150,120 | T→C | 16.2% | F153F (TTT→TTC) | yghA → | putative oxidoreductase |
| RA | 3,165,015 | T→A | 18.7% | D320V (GAT→GTT) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,218,198 | C→T | 50.6% | Q293Q (CAG→CAA) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,248,041 | G→T | 20.9% | G90V (GGG→GTG) | yqjA → | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| RA | 3,452,057 | A→T | 100% | I77N (ATC→AAC) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,477,434 | T→C | 23.1% | intergenic (‑15/‑206) | fkpA ← / → slyX | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)/phi X174 lysis protein |
| RA | 3,540,239 | T→A | 26.7% | L26Q (CTG→CAG) | feoA → | ferrous iron transporter, protein A |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,622,796 | T→G | 100% | L1202R (CTG→CGG) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,648,042 | T→C | 100% | intergenic (‑254/‑486) | dinQ ← / → arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| RA | 3,705,984 | T→G | 22.4% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 22.0% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,736,609 | G→A | 43.3% | P190L (CCA→CTA) | bax ← | putative glucosaminidase |
| RA | 3,853,909 | A→G | 100% | intergenic (+267/‑13) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,881,837 | G→T | 26.7% | T162N (ACC→AAC) | dnaN ← | DNA polymerase III, beta subunit |
| RA | 3,910,662 | A→T | 100% | D288E (GAT→GAA) | pstS ← | phosphate ABC transporter periplasmic binding protein |
| RA | 3,922,509 | G→A | 19.7% | intergenic (‑69/+548) | atpI ← / ← rsmG | ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,950,467 | G→T | 42.1% | intergenic (+47/‑40) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
| RA | 3,950,468 | G→T | 100% | intergenic (+48/‑39) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
| RA | 3,971,690 | A→C | 100% | Q144P (CAG→CCG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,979,102 | G→A | 17.1% | A168T (GCG→ACG) | wzyE → | putative ECA polysaccharide chain elongation protein |
| RA | 4,060,261 | G→T | 15.3% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 15.8% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,098,512 | C→A | 18.2% | R259R (CGC→CGA) | rhaS → | transcriptional activator of rhaBAD and rhaT |
| RA | 4,140,718 | T→A | 15.6% | I502F (ATC→TTC) | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,168,540 | T→A | 100% | intergenic (+93/‑101) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| RA | 4,177,171 | T→A | 16.2% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 15.9% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,235,689:1 | +A | 100% | intergenic (+282/‑217) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| JC | 4,242,942 | Δ66 bp | 100% | coding (510‑575/891 nt) | malG ← | maltose transporter subunit |
| RA | 4,279,370 | G→T | 23.2% | A298S (GCA→TCA) | ghxP → | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
| RA | 4,287,458 | G→A | 19.5% | intergenic (‑87/‑306) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,060 | C→T | 27.8% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,312,074 | C→T | 15.3% | intergenic (‑32/+27) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 15.9% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 15.0% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,324,454 | G→T | 29.1% | Q238K (CAA→AAA) | phnC ← | phosphonate ABC transporter ATPase |
| RA | 4,352,460 | T→G | 19.5% | intergenic (+103/‑124) | yjdJ → / → ghoS | GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA |
| RA | 4,434,437 | T→A | 40.8% | W109R (TGG→AGG) | ytfH → | DUF24 family HxlR‑type putative transcriptional regulator |
| RA | 4,490,055 | T→G | 100% | E3D (GAA→GAC) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,560,045 | C→A | 51.0% | W212C (TGG→TGT) | yjiH ← | nucleoside recognition pore and gate family putative inner membrane transporter |
| RA | 4,568,688 | C→A | 52.6% | intergenic (‑169/‑310) | mdtM ← / → yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
| RA | 4,615,859 | T→G | 100% | T403P (ACC→CCC) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| RA | 4,631,700 | T→C | 100% | L323P (CTT→CCT) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423738–3424234 | 3424575–3424238 | 5–838 | 21 [20] | [20] 21 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 10 (0.130) | 7/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 213635 | NA (NA) | 6 (0.080) | 4/164 | NT | NA | noncoding (4/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 213668 | NA (NA) | noncoding (37/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 224057 | NA (NA) | 18 (0.210) | 6/176 | NT | NA | noncoding (287/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224082 | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 30 (0.380) | 11/164 | NT | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 224090 | NA (NA) | 10 (0.120) | 7/168 | NT | NA | noncoding (320/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224102 | NA (NA) | noncoding (332/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 224380 = | NA (NA) | 15 (0.180) | 10/170 | NT | NA | noncoding (610/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224400 = | NA (NA) | noncoding (630/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225126 | NA (NA) | 8 (0.100) | 6/168 | NT | NA | noncoding (1356/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225135 | NA (NA) | noncoding (1365/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225362 = | NA (NA) | 3 (0.040) | 3/168 | NT | NA | intergenic (+50/‑19) | rrsH/ileV | 16S ribosomal RNA of rrnH operon/tRNA‑Ile |
| ? | NC_000913 | 225395 = | NA (NA) | noncoding (15/77 nt) | ileV | tRNA‑Ile | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 29 (0.350) | 15/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 226565 | NA (NA) | 4 (0.050) | 3/166 | NT | NA | noncoding (807/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226578 | NA (NA) | noncoding (820/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 227242 = | NA (NA) | 25 (0.310) | 8/166 | NT | NA | noncoding (1484/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 227264 = | NA (NA) | noncoding (1506/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 22 (0.270) | 11/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 19 (0.240) | 10/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228022 | NA (NA) | 14 (0.180) | 6/164 | NT | NA | noncoding (2264/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228033 | NA (NA) | noncoding (2275/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 20 (0.250) | 9/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228241 | NA (NA) | 8 (0.100) | 6/170 | NT | NA | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228262 | NA (NA) | noncoding (2504/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 75 (0.950) | 49/162 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
| * | ? | NC_000913 | = 271191 | NA (NA) | 7 (0.090) | 4/166 | NT | NA | noncoding (651/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 271214 | NA (NA) | noncoding (674/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 14 (0.180) | 8/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 9 (0.110) | 6/172 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 11 (0.140) | 7/164 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 11 (0.140) | 7/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274882 | NA (NA) | 9 (0.110) | 5/168 | NT | NA | noncoding (268/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274899 | NA (NA) | noncoding (251/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 22 (0.260) | 13/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 275007 | NA (NA) | 31 (0.370) | 10/172 | NT | NA | noncoding (143/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 275025 | NA (NA) | noncoding (125/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 279805 = | NA (NA) | 13 (0.160) | 9/170 | NT | NA | noncoding (126/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 279825 = | NA (NA) | noncoding (106/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 8 (0.100) | 6/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 8 (0.100) | 6/170 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 6 (0.070) | 5/172 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 346864 | NA (NA) | 3 (0.040) | 3/164 | NT | NA | coding (1580/1587 nt) | prpR | propionate catabolism operon regulatory protein |
| ? | NC_000913 | = 346894 | NA (NA) | coding (1550/1587 nt) | prpR | propionate catabolism operon regulatory protein | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 11 (0.140) | 7/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 16 (0.200) | 7/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 6 (0.080) | 4/160 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381832 = | NA (NA) | 7 (0.090) | 5/166 | NT | NA | noncoding (573/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381859 = | NA (NA) | noncoding (600/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381837 | NA (NA) | 7 (0.090) | 6/166 | NT | NA | noncoding (578/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381852 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382110 = | NA (NA) | 19 (0.230) | 6/168 | NT | NA | noncoding (851/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382141 = | NA (NA) | noncoding (882/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382242 | NA (NA) | 13 (0.160) | 5/166 | NT | NA | noncoding (983/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382260 | NA (NA) | noncoding (1001/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 16 (0.200) | 8/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 11 (0.130) | 8/168 | NT | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 409055 | NA (NA) | 9 (0.110) | 5/164 | NT | NA | noncoding (4/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 409088 | NA (NA) | noncoding (37/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 729837 = | NA (NA) | 10 (0.120) | 7/172 | NT | NA | coding (255/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 729868 = | NA (NA) | coding (286/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 729981 = | NA (NA) | 3 (0.040) | 7/168 | NT | NA | coding (399/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 730006 = | NA (NA) | coding (424/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 10 (0.120) | 7/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 792268 = | NA (NA) | 6 (0.080) | 3/164 | NT | NA | noncoding (5/34 nt) | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 792298 = | NA (NA) | intergenic (‑243/+18) | galE/modF | UDP‑galactose‑4‑epimerase/molybdate ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 1180420 | NA (NA) | 4 (0.050) | 3/166 | NT | NA | noncoding (67/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 1180448 | NA (NA) | noncoding (95/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 1180448 | NA (NA) | 4 (0.050) | 3/166 | NT | NA | noncoding (95/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2655037 | NA (NA) | noncoding (68/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1207790 = | 62 (0.720) | 23 (0.320) | 20/146 | NT | 34.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 35 (0.490) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 81 (0.980) | 59/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1423471 = | 39 (0.450) | 10 (0.120) | 6/168 | NT | 18.1% | pseudogene (271/444 nt) | rzpR | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| ? | NC_000913 | 1423543 = | 54 (0.660) | pseudogene (343/444 nt) | rzpR | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS | |||||
| * | ? | NC_000913 | = 1436228 | 48 (0.550) | 11 (0.140) | 8/162 | NT | 19.7% | coding (666/1134 nt) | ompN | outer membrane pore protein N, non‑specific |
| ? | NC_000913 | = 1436244 | 46 (0.580) | coding (650/1134 nt) | ompN | outer membrane pore protein N, non‑specific | |||||
| * | ? | NC_000913 | 1468596 = | NA (NA) | 22 (0.270) | 10/166 | NT | 47.6% | noncoding (645/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1650887 | 26 (0.300) | noncoding (45/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 35 (0.810) +44 bp |
11/90 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1470201 | NA (NA) | 6 (0.080) | 3/164 | NT | NA | noncoding (906/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1470210 | NA (NA) | noncoding (915/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 2304696 | NA (NA) | 7 (0.090) | 4/164 | NT | 17.8% | noncoding (280/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304728 | 35 (0.400) | noncoding (312/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2320762 | 55 (0.640) | 10 (0.120) | 8/166 | NT | 16.0% | coding (720/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
| ? | NC_000913 | = 2320771 | 54 (0.670) | coding (729/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC | |||||
| * | ? | NC_000913 | = 2340364 | NA (NA) | 5 (0.060) | 5/164 | NT | NA | noncoding (52/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3984220 = | NA (NA) | noncoding (1/104 nt) | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 2511352 = | NA (NA) | 11 (0.140) | 7/164 | NT | NA | noncoding (1/88 nt) | REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2511384 = | NA (NA) | noncoding (33/88 nt) | REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2593024 | NA (NA) | 5 (0.060) | 5/164 | NT | NA | noncoding (47/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2593056 | NA (NA) | noncoding (79/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2618037 | NA (NA) | 7 (0.090) | 6/166 | NT | NA | intergenic (+100/+38) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation |
| ? | NC_000913 | = 2618053 | NA (NA) | intergenic (+116/+22) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 41 (0.510) | 8/166 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2727825 = | NA (NA) | 4 (0.050) | 4/166 | NT | NA | noncoding (1360/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727893 = | NA (NA) | noncoding (1292/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2727847 = | NA (NA) | 12 (0.150) | 4/170 | NT | NA | noncoding (1338/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727872 = | NA (NA) | noncoding (1313/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 33 (0.400) | 12/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2729630 = | NA (NA) | 21 (0.260) | 11/168 | NT | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2731304 = | 31 (0.360) | 14 (0.170) | 5/166 | NT | 32.6% | intergenic (‑147/+296) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | NC_000913 | = 4035360 | NA (NA) | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 2837464 | NA (NA) | 5 (0.060) | 4/162 | NT | NA | intergenic (‑39/+114) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| ? | NC_000913 | = 2837491 | NA (NA) | noncoding (27/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3139625 = | NA (NA) | 8 (0.100) | 5/164 | NT | NA | noncoding (5/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3139655 = | NA (NA) | noncoding (35/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3163644 = | NA (NA) | 10 (0.130) | 6/160 | NT | NA | noncoding (1/30 nt) | REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3163674 = | NA (NA) | intergenic (‑193/+41) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A | |||||
| * | ? | NC_000913 | 3203112 = | NA (NA) | 6 (0.080) | 5/164 | NT | NA | coding (1222/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| ? | NC_000913 | 3203140 = | NA (NA) | intergenic (+11/+170) | cca/bacA | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase | |||||
| * | ? | NC_000913 | = 3252144 | NA (NA) | 6 (0.070) | 5/166 | NT | NA | noncoding (80/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3252155 | NA (NA) | noncoding (91/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3255217 = | NA (NA) | 8 (0.100) | 6/164 | NT | NA | noncoding (1/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4254000 | NA (NA) | noncoding (100/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3281702 = | NA (NA) | 3 (0.040) | 3/164 | NT | NA | noncoding (1/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3281734 = | NA (NA) | noncoding (33/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3336878 = | NA (NA) | 7 (0.090) | 5/168 | NT | NA | intergenic (‑75/+85) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component |
| ? | NC_000913 | 3336905 = | NA (NA) | intergenic (‑102/+58) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component | |||||
| * | ? | NC_000913 | 3336923 = | NA (NA) | 4 (0.050) | 3/166 | NT | NA | noncoding (5/34 nt) | REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3336953 = | NA (NA) | intergenic (‑150/+10) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 9 (0.110) | 7/164 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 6 (0.070) | 4/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 8 (0.100) | 4/166 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620562 | NA (NA) | 9 (0.110) | 7/166 | NT | 100% | coding (1371/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620587 | 0 (0.000) | coding (1396/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 22 (0.270) | 9/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620614 | NA (NA) | 10 (0.120) | 6/166 | NT | 100% | coding (1423/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620635 | 0 (0.000) | coding (1444/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3621314 | NA (NA) | 8 (0.100) | 5/168 | NT | 100% | coding (2123/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3621344 | 0 (0.000) | coding (2153/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3622174 | NA (NA) | 7 (0.090) | 3/168 | NT | 100% | coding (2983/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3622205 | 0 (0.000) | coding (3014/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3650712 = | NA (NA) | 4 (0.050) | 3/164 | NT | NA | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3650744 = | NA (NA) | noncoding (33/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 3674441 | NA (NA) | 9 (0.110) | 5/164 | NT | NA | noncoding (61/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3674473 | NA (NA) | noncoding (93/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3708321 | NA (NA) | 4 (0.050) | 4/164 | NT | NA | noncoding (50/86 nt) | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3708353 | NA (NA) | noncoding (82/86 nt) | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3765531 = | NA (NA) | 13 (0.160) | 3/168 | NT | 100% | coding (3349/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3765547 = | 0 (0.000) | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3898636 | NA (NA) | 10 (0.130) | 6/162 | NT | NA | noncoding (6/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3898650 | NA (NA) | noncoding (20/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3908387 = | NA (NA) | 14 (0.180) | 8/164 | NT | NA | noncoding (1/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3908412 = | NA (NA) | noncoding (26/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 8 (0.110) | 3/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 3946822 | NA (NA) | 18 (0.210) | 9/174 | NT | 16.8% | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040683 | 91 (1.050) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3962704 = | NA (NA) | 7 (0.090) | 6/166 | NT | NA | noncoding (5/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3962736 = | NA (NA) | intergenic (+38/+9) | rep/gpp | DNA helicase and single‑stranded DNA‑dependent ATPase/guanosine pentaphosphatase/exopolyphosphatase | |||||
| * | ? | NC_000913 | = 4037476 | 13 (0.150) | 19 (0.220) | 9/174 | NT | 59.9% | intergenic (+141/‑43) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4037516 | NA (NA) | intergenic (+181/‑3) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4040482 = | NA (NA) | 43 (0.530) | 11/166 | NT | NA | intergenic (+59/‑35) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4132351 = | NA (NA) | 7 (0.090) | 7/162 | NT | NA | noncoding (5/34 nt) | REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP306 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4132381 = | NA (NA) | intergenic (+114/‑235) | metL/metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase | |||||
| * | ? | NC_000913 | 4229413 = | NA (NA) | 4 (0.050) | 4/164 | NT | NA | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4614640 | NA (NA) | noncoding (384/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 4235376 = | NA (NA) | 8 (0.110) | 5/156 | NT | NA | coding (1619/1650 nt) | pgi | glucosephosphate isomerase |
| ? | NC_000913 | 4235411 = | NA (NA) | intergenic (+4/‑495) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | 4266888 = | NA (NA) | 7 (0.090) | 7/164 | NT | NA | noncoding (1/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4266918 = | NA (NA) | noncoding (31/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4295835 = | NA (NA) | 7 (0.090) | 5/164 | NT | NA | noncoding (1/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295868 = | NA (NA) | noncoding (34/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4325831 = | NA (NA) | 23 (0.290) | 6/164 | NT | 30.7% | noncoding (30/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 4326213 = | 52 (0.650) | noncoding (412/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4332016 = | NA (NA) | 5 (0.060) | 5/160 | NT | NA | noncoding (3/32 nt) | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4332047 = | NA (NA) | intergenic (+43/‑69) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 6 (0.070) | 6/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
| * | ? | NC_000913 | 4450948 = | NA (NA) | 4 (0.050) | 3/164 | NT | NA | noncoding (5/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4450978 = | NA (NA) | noncoding (35/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4460417 = | NA (NA) | 4 (0.050) | 4/168 | NT | NA | noncoding (3/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4460445 = | NA (NA) | noncoding (31/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4606558 = | NA (NA) | 5 (0.060) | 4/164 | NT | NA | noncoding (1/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4606590 = | NA (NA) | noncoding (33/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4628814 | NA (NA) | 5 (0.060) | 4/164 | NT | NA | noncoding (120/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628844 | NA (NA) | noncoding (150/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||