Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I1 R1 102 83.9 4092546 96.1% 3932936 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,799,324 A→G intergenic (‑12/+21) waaU ← / ← waaZ lipopolysaccharide core biosynthesis/lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,799,3240AG95.3% 360.6 / 1.1 107intergenic (‑12/+21)waaU/waaZlipopolysaccharide core biosynthesis/lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base A (4/1);  new base G (41/61);  total (45/62)
Fisher's exact test for biased strand distribution p-value = 1.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

TTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATATTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACT  >  NC_000913/3799227‑3799419
                                                                                                 |                                                                                               
ttattaCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCAtgtt                                                                                               >  1:1666219/1‑100 (MQ=255)
 tattaCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCAtgtta                                                                                              <  1:707830/100‑1 (MQ=255)
 tattaCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCAtgtta                                                                                              <  2:1941771/100‑1 (MQ=255)
  attaCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCAtgtta                                                                                              <  1:348585/99‑1 (MQ=255)
   ttaCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCTCATTTTTATACCATgttatt                                                                                            <  2:1252735/100‑1 (MQ=255)
     aCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTAtttt                                                                                          <  2:909693/100‑1 (MQ=255)
     aCGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTAtttt                                                                                          <  2:786652/100‑1 (MQ=255)
      cGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTa                                                                                         >  2:835296/1‑100 (MQ=255)
       gAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAATTTTTTAATCGCATTTTTATATTATGTTATTTTa                                                                                         >  2:1364951/1‑99 (MQ=255)
       gAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAg                                                                                        <  2:990494/100‑1 (MQ=255)
       gAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAg                                                                                        <  2:655243/100‑1 (MQ=255)
       gAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAg                                                                                        >  2:1450586/1‑100 (MQ=255)
         aaTAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGtt                                                                                      <  2:1555484/100‑1 (MQ=255)
          aTAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGttt                                                                                     >  1:1819747/1‑100 (MQ=255)
               aaagaaagGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGga                                                                                >  2:1540263/1‑100 (MQ=255)
               aaagaaagGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGga                                                                                <  1:578332/100‑1 (MQ=255)
                aagaaagGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGgat                                                                               <  1:1956577/100‑1 (MQ=255)
                   aaagGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGgatgat                                                                            <  1:1302953/100‑1 (MQ=255)
                   aaagGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGgatgat                                                                            <  2:835616/100‑1 (MQ=255)
                    aagGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGatt                                                                           <  2:321195/100‑1 (MQ=255)
                     agGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGatta                                                                          <  2:1489110/100‑1 (MQ=255)
                     agGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGatta                                                                          <  1:81746/100‑1 (MQ=255)
                     agGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGatta                                                                          <  1:52567/100‑1 (MQ=255)
                         aaTTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGattaatta                                                                      >  1:453007/1‑100 (MQ=255)
                          aTTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAg                                                                     <  2:1142677/100‑1 (MQ=255)
                          aTTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGAATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAg                                                                     <  2:180513/100‑1 (MQ=255)
                            tAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCa                                                                   <  2:266380/100‑1 (MQ=255)
                             aaTCTTGATTTTGTTTATATAACATCTTTTCCTTTTGCGAAAAGTTCATAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCAt                                                                  <  2:1379988/100‑1 (MQ=255)
                             aaTCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCAt                                                                  >  2:107621/1‑100 (MQ=255)
                              aTCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATa                                                                 <  2:1593629/100‑1 (MQ=255)
                               tCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATATTATTTTAGTTTCAGGATGATTAATTAGCATaa                                                                >  2:1147793/1‑100 (MQ=255)
                                cTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAg                                                               <  1:2039453/100‑1 (MQ=255)
                                cTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAg                                                               <  2:887243/100‑1 (MQ=255)
                                    tccgatcttATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATc                                                           <  1:683498/93‑1 (MQ=255)
                                    aTTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATc                                                           >  2:125931/1‑100 (MQ=255)
                                      tttGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCgg                                                         >  1:1000476/1‑100 (MQ=255)
                                      tttGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCgg                                                         <  1:861840/100‑1 (MQ=255)
                                         gTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTg                                                      <  1:1958809/100‑1 (MQ=255)
                                          tttATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGa                                                     <  2:1671240/100‑1 (MQ=255)
                                            tatataAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATcagatcgga                                                   >  2:683496/1‑92 (MQ=255)
                                            tatataAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAg                                                   <  1:117406/100‑1 (MQ=255)
                                            tatataAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAg                                                   >  1:362963/1‑100 (MQ=255)
                                            tatataAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAg                                                   <  2:595423/100‑1 (MQ=255)
                                            gatctaAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAg                                                   <  2:820609/96‑1 (MQ=255)
                                               ataAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTc                                                <  2:1129360/100‑1 (MQ=255)
                                                taACATCTTTTCTTAATGGGAAAAGTGCCTAATGGCATGTTTACACCATATTCTGTTAGATTGAAGGTGATTAATTAGCATAAGAATCGGATAAAggt                                                 >  2:1304485/1‑96 (MQ=255)
                                                taAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGatgatgg                                               >  2:1994273/1‑94 (MQ=255)
                                                taAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCt                                               <  1:2001739/100‑1 (MQ=255)
                                                taAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCt                                               >  1:1238559/1‑100 (MQ=255)
                                                 aaaaTCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAgagatc                                              >  1:820612/1‑95 (MQ=255)
                                                 aaaaTCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCta                                              >  2:1017074/1‑100 (MQ=255)
                                                 aaaaTCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCta                                              >  1:1051219/1‑100 (MQ=255)
                                                 aaaaTCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCta                                              <  1:1450595/100‑1 (MQ=255)
                                                 aaaaTCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTGCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCta                                              >  2:1433673/1‑100 (MQ=255)
                                                      cttttcttttTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTg                                         <  1:1439511/100‑1 (MQ=255)
                                                      cttttcttttTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTg                                         <  1:584180/100‑1 (MQ=255)
                                                      cttttcttttTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTg                                         <  1:676654/100‑1 (MQ=255)
                                                      cttttcttttTGTGAAAAGTTCCTAAGCGCATTTTTATACCATATTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTg                                         <  2:612259/100‑1 (MQ=255)
                                                           cttttTGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAttt                                    >  1:143075/1‑100 (MQ=255)
                                                            tttttGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAtttt                                   >  1:223332/1‑100 (MQ=255)
                                                            tttttGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAtttt                                   <  1:778518/100‑1 (MQ=255)
                                                            tttttGTGAAAAGTTCCTAAGCGCATTTTTATACCATATTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAtttt                                   >  2:757948/1‑100 (MQ=255)
                                                              tttGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAtttttt                                 <  2:362962/100‑1 (MQ=255)
                                                               ttGTGAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAttttttt                                <  2:1209844/100‑1 (MQ=255)
                                                               atctgAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAttttttt                                <  1:1422812/97‑1 (MQ=255)
                                                                 gtgAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTc                              <  1:1748338/100‑1 (MQ=255)
                                                                  tgAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCt                             >  1:685545/1‑100 (MQ=255)
                                                                  tgAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCt                             <  2:1238553/100‑1 (MQ=255)
                                                                   gAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCAtttttttagat                            >  2:1422803/1‑96 (MQ=255)
                                                                   gAAAAGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCtt                            >  1:643035/1‑100 (MQ=255)
                                                                     aaaGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGt                          >  1:491151/1‑100 (MQ=255)
                                                                     aaaGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGt                          >  1:488813/1‑100 (MQ=255)
                                                                      aaGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTc                         <  1:296766/100‑1 (MQ=255)
                                                                      aaGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTc                         <  1:835299/100‑1 (MQ=255)
                                                                      aaGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTc                         <  2:877355/100‑1 (MQ=255)
                                                                      aaGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTc                         <  1:107622/100‑1 (MQ=255)
                                                                       aGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCa                        <  1:1017079/100‑1 (MQ=255)
                                                                       aGTTCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCa                        <  2:1666206/100‑1 (MQ=255)
                                                                          tCCTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCatat                     >  1:950212/1‑100 (MQ=255)
                                                                           ccTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATc                    >  1:604753/1‑100 (MQ=255)
                                                                           ccTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATc                    <  1:29084/100‑1 (MQ=255)
                                                                            cTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCt                   >  2:533262/1‑100 (MQ=255)
                                                                            cTAAGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCt                   >  2:1272507/1‑100 (MQ=255)
                                                                              aaGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCttt                 <  1:1612523/100‑1 (MQ=255)
                                                                               aGCGCATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCtttt                <  2:1050748/100‑1 (MQ=255)
                                                                                gcgcATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTTTCAtttttttt                >  2:1292388/1‑99 (MQ=255)
                                                                                gcgcATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCttt                 >  2:1241874/1‑98 (MQ=255)
                                                                                gcgcATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTg               <  2:488812/100‑1 (MQ=255)
                                                                                gcgcATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTg               <  2:491150/100‑1 (MQ=255)
                                                                                 cgcATTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGa              >  2:1293650/1‑100 (MQ=255)
                                                                                  gcATTTTTATACCATGTTATTTTAGTTTCAGTATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTg               <  2:1816350/98‑1 (MQ=255)
                                                                                    aTTTTTATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGAttc           <  1:536922/100‑1 (MQ=255)
                                                                                       tttATACCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGAttcttc        <  2:1051214/100‑1 (MQ=255)
                                                                                            aCCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCAc   >  1:1998456/1‑100 (MQ=255)
                                                                                            aCCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCAc   <  2:441963/100‑1 (MQ=255)
                                                                                            aCCATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCAc   >  1:1923879/1‑100 (MQ=255)
                                                                                             ccATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACt  <  2:643033/100‑1 (MQ=255)
                                                                                             ccATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACt  >  1:975395/1‑100 (MQ=255)
                                                                                             ccATATTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACt  >  2:1646234/1‑100 (MQ=255)
                                                                                              cATGTTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACt  <  1:1364960/99‑1 (MQ=255)
                                                                                                 |                                                                                               
TTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAAAATCTTTTCTTTTTGTGAAAAGTTCCTAAGCGCATTTTTATACCATATTATTTTAGTTTCAGGATGATTAATTAGCATAAGAATCGGTTGAAGTTCTATATTGCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACT  >  NC_000913/3799227‑3799419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A