Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I0 R1
|
200 |
171.4 |
8351354 |
94.3% |
7875326 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,795,630 |
(A)6→5 |
100% |
coding (1378/1401 nt) |
gabP → |
gamma‑aminobutyrate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,795,625 | 0 | A | . | 75.6%
| 424.1
/ 214.4
| 197 | coding (1373/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| Reads supporting (aligned to +/- strand): ref base A (25/22); new base . (71/78); total (96/101) |
| Fisher's exact test for biased strand distribution p-value = 6.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.97e-01 |
Only 100 of 209 total aligned reads displayed.
CGGCGCAACAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGATATTAT > NC_000913/2795526‑2795723
|
cgGCGCAACAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCa > 2:1133792/1‑100 (MQ=255)
ggCGCAACAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGGGTATCTGTACCGTGCCAATTTTGGCTCGCTGGAAATAGCTGGTATTGTGGCa > 2:2485901/1‑99 (MQ=255)
gcgcAACAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCaaa < 2:251752/100‑1 (MQ=255)
gcAACAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCaaaaa < 2:2134485/100‑1 (MQ=255)
aaCAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCaaaaaca > 2:4123263/1‑98 (MQ=255)
cAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCAGATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCaaaaacacc < 2:3548307/100‑5 (MQ=255)
gTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACAccc < 2:812112/100‑1 (MQ=255)
gTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCg > 1:2312194/1‑100 (MQ=255)
ttAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGt < 1:3075009/100‑1 (MQ=255)
aGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTc < 2:1534780/100‑1 (MQ=255)
gAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCa > 2:880278/1‑100 (MQ=255)
gAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCa < 1:2351572/100‑1 (MQ=255)
aGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACTGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCata < 2:2917880/100‑1 (MQ=255)
aGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCata < 1:2671728/100‑1 (MQ=255)
gTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCataa < 2:167647/100‑1 (MQ=255)
gTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCataa > 2:2108742/1‑100 (MQ=255)
gTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑‑AAAACACCCGTTCataat < 1:3106581/100‑1 (MQ=255)
tGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTGGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCataat > 2:2675056/1‑100 (MQ=255)
tGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCataat > 2:1393861/1‑100 (MQ=255)
gATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCataat > 1:552403/1‑100 (MQ=255)
gATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCataata < 1:1748740/100‑1 (MQ=255)
gATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCataata > 1:395783/1‑100 (MQ=255)
aTCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGACAAAACTGGTATTGTGGCAAAAAACACCCGTTCataata > 2:1055311/1‑100 (MQ=255)
aTCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATAc < 1:3524896/100‑1 (MQ=255)
tctcCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTGTTGTGGC‑AAAAACGCCCGTTCATAATAcg > 1:4107991/1‑100 (MQ=255)
tctcCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATAcg > 1:3297390/1‑100 (MQ=255)
ctcCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATAcgc > 2:4432/1‑100 (MQ=255)
ccACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATAcgcg < 1:1050076/100‑1 (MQ=255)
aCCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCt < 1:3202616/100‑1 (MQ=255)
ccGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtga < 1:3625535/100‑1 (MQ=255)
ggCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatc < 2:742014/100‑1 (MQ=255)
ggCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatc < 1:2494353/100‑1 (MQ=255)
ggCTAATTAGCGATAGGGATTATCTGTACCGTGCAAATTATGGCTCGCTGGAAAAAGCTGGTATAGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatc < 2:2605910/100‑1 (MQ=255)
gCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatca < 1:3867345/100‑1 (MQ=255)
gCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGAAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatca < 1:1125560/100‑1 (MQ=255)
atctttaGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCtgatca < 2:581408/96‑1 (MQ=255)
ttattaGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCGGGTGTTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatcat > 1:3367992/1‑99 (MQ=255)
attaGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTAGCTGGCAAAAGCTGGTAATGTGGC‑AAAAACACCCGTTCATAATACGCGCtgagcatgat > 2:3497566/1‑100 (MQ=255)
ttaGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCtgatcaagat > 1:581412/1‑100 (MQ=255)
ttaGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatcatgatc < 2:3297367/100‑1 (MQ=255)
tccgatctgggATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCtgatcatgatca < 2:1882887/92‑1 (MQ=255)
aGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAg > 2:4009236/1‑100 (MQ=255)
gggATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCT‑AAAAAAAAAAAAAAAACACCCGTTCATAATACGCGCtgatcatga < 2:165299/93‑1 (MQ=255)
gCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGATAAAGCTGGTATTGTGGC‑AAAAACACCCTTTCATAATACGCGATTATCATGATCAg > 2:328595/1‑99 (MQ=255)
gCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAgg < 1:1245505/100‑1 (MQ=255)
gATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAg < 1:48959/100‑1 (MQ=255)
gATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAg < 1:769103/100‑1 (MQ=255)
gATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAg < 2:2281076/100‑1 (MQ=255)
gATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAg > 2:1274266/1‑100 (MQ=255)
aTAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGt > 2:3696000/1‑100 (MQ=255)
tAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTc < 1:97093/100‑1 (MQ=255)
gggATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTcac > 1:1176254/1‑100 (MQ=255)
gggATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTcac > 2:845843/1‑100 (MQ=255)
ggATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAgcgcgtatt < 1:3578503/100‑9 (MQ=255)
agATTATCTGTACCGTGCCAAGTAGAGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAg < 2:1822576/94‑1 (MQ=255)
gATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTcaca > 1:1569279/1‑100 (MQ=255)
aTCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCAt > 2:3462229/1‑100 (MQ=255)
aTCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATg < 1:3278894/100‑1 (MQ=255)
tCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATg < 2:3035642/100‑1 (MQ=255)
cTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGAc > 2:322580/1‑100 (MQ=255)
tACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCAt > 2:1983501/1‑100 (MQ=255)
aCCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCAtt < 1:1974276/100‑1 (MQ=255)
aCCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGG‑GAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCAtt < 2:4028753/100‑1 (MQ=255)
ccGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTa < 2:2820417/100‑1 (MQ=255)
ccGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTa < 1:954126/100‑1 (MQ=255)
ccGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTa > 1:3237249/1‑100 (MQ=255)
cGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTAc > 1:2867426/1‑100 (MQ=255)
gCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGtc > 1:1435219/1‑100 (MQ=255)
ccAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGtc < 1:2935325/100‑1 (MQ=255)
aaTTATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTctct < 1:2145007/100‑1 (MQ=255)
tATGGCTCGCTGGAAAAAGCTGGTATTTTGGC‑AAAAACTCCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTg < 2:1336393/98‑1 (MQ=255)
tATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGa < 2:1435210/100‑1 (MQ=255)
tATGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGa > 1:2888872/1‑100 (MQ=255)
tGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATg < 2:2958753/100‑1 (MQ=255)
tGGCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATg < 2:2321964/100‑1 (MQ=255)
gCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATgg > 1:238268/1‑100 (MQ=255)
gCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGc > 2:721698/1‑100 (MQ=255)
gCTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGc < 1:4019649/100‑1 (MQ=255)
cTCGCTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCt > 1:16917/1‑100 (MQ=255)
cTGGAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCg > 1:4047770/1‑100 (MQ=255)
ggAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgc > 1:80425/1‑100 (MQ=255)
ggAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgct > 1:3861470/1‑100 (MQ=255)
ggAAAAAGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgct > 2:3370553/1‑100 (MQ=255)
aaaaGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgctgg > 1:3664767/1‑100 (MQ=255)
aaaaGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgctggc < 1:702525/100‑1 (MQ=255)
aaGCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgctggctg > 1:2015004/1‑100 (MQ=255)
aGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgctggctg < 1:1188148/100‑1 (MQ=255)
gCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCgctggcttan < 2:3169116/100‑4 (MQ=255)
gCTGGTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTgaa < 2:1723532/100‑1 (MQ=255)
tGGTATTGTGGC‑AAAAACCCCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTgaaga < 1:80195/100‑1 (MQ=255)
gTATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAAc > 2:3776313/1‑100 (MQ=255)
tATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACg < 2:2072443/100‑1 (MQ=255)
tATTGTGGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACg > 1:1506412/1‑100 (MQ=255)
ttGTGGC‑AAAAACACCCGTTCATAATACGGGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGat < 2:660103/100‑1 (MQ=255)
tgtgGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGat > 1:1513476/1‑100 (MQ=255)
gtgGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGatat > 2:3432750/1‑100 (MQ=255)
gtgGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGatat > 1:1708107/1‑100 (MQ=255)
gtgGC‑AAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGatat > 1:3925370/1‑100 (MQ=255)
gtggaaaacaCACCCGTTCATAATACGCGCTGATCATGATCAGTAGTCACACCATTACCATGACGTGTCTGGATGGCTATCTCTGGCGGAAGAACGacat > 2:1802943/5‑100 (MQ=255)
gCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGAtatta < 2:2945672/100‑1 (MQ=255)
|
CGGCGCAACAGTTAGAAGTGATCTCCACCGGCTTATTAGCGATAGGGATTATCTGTACCGTGCCAATTATGGCTCGCTGGAAAAAGCTGGTATTGTGGCAAAAAACACCCGTTCATAATACGCGCTGATCATGATCAGGAGTCACACCATGACCATTACGTCTCTGGATGGCTATCGCTGGCTGAAGAACGATATTAT > NC_000913/2795526‑2795723
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
