mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 36,231 | T→C | 100% | intergenic (‑69/+40) | caiD ← / ← caiC | carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase |
| RA | 162,973 | G→A | 100% | C290Y (TGT→TAT) | hrpB → | putative ATP‑dependent helicase |
| JC | 190,553 | Δ14 bp | 100% | coding (680‑693/726 nt) | rpsB → | 30S ribosomal subunit protein S2 |
| RA | 216,568 | C→T | 100% | A146T (GCC→ACC) | yaeF ← | putative lipoprotein |
| RA | 235,082 | A→G | 71.8% | K89K (AAA→AAG) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 236,541 | C→T | 100% | R159* (CGA→TGA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 247,107 | G→A | 74.0% | K132K (AAG→AAA) | yafL → | putative lipoprotein and C40 family peptidase |
| RA | 335,166 | T→A | 15.1% | intergenic (‑144/‑114) | yahC ← / → yahD | putative inner membrane protein/ankyrin repeat protein |
| RA | 350,119 | T→G | 77.3% | G36G (GGT→GGG) | prpC → | 2‑methylcitrate synthase |
| RA | 356,492 | A→G | 77.7% | T108A (ACG→GCG) | codA → | cytosine/isoguanine deaminase |
| RA | 358,599 | G→A | 70.7% | A31V (GCG→GTG) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| RA | 428,188 | G→T | 100% | R181L (CGC→CTC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 474,643 | G→T | 78.7% | V173V (GTC→GTA) | tesB ← | acyl‑CoA thioesterase 2 |
| RA | 475,614 | A→G | 15.5% | D79G (GAT→GGT) | ybaY → | outer membrane lipoprotein |
| RA | 481,968 | A→G | 74.7% | G812G (GGT→GGC) | acrB ← | multidrug efflux system protein |
| RA | 488,815 | G→A | 77.2% | A760A (GCG→GCA) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 497,139:1 | (T)5→6 | 100% | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| RA | 520,993 | T→G | 100% | V193G (GTC→GGC) | ybbP → | putative ABC transporter permease |
| RA | 545,486 | A→C | 76.3% | I293S (ATT→AGT) | allD ← | ureidoglycolate dehydrogenase |
| RA | 556,721 | G→T | 83.3% | C51* (TGC→TGA) | ybcJ ← | ribosome‑associated protein; putative RNA‑binding protein |
| RA | 606,299 | A→T | 15.8% | V362E (GTG→GAG) | ybdK ← | weak gamma‑glutamyl:cysteine ligase |
| RA | 635,261 | A→G | 73.8% | V39A (GTT→GCT) | ybdM ← | Spo0J family protein, ParB‑like nuclease domain |
| RA | 700,805 | A→T | 100% | C264S (TGC→AGC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 720,946 | C→T | 100% | intergenic (+106/+110) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 723,744 | C→G | 100% | R224P (CGC→CCC) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| RA | 756,886 | T→A | 15.3% | L327Q (CTG→CAG) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 772,209 | C→A | 100% | T251N (ACC→AAC) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 882,722 | G→A | 100% | R5C (CGC→TGC) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| RA | 882,856 | C→A | 18.8% | R178L (CGT→CTT) | ybjG ← | undecaprenyl pyrophosphate phosphatase |
| RA | 894,155 | T→G | 100% | D124E (GAT→GAG) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 1,022,600 | C→T | 80.9% | Q428Q (CAG→CAA) | yccS ← | putative transporter, FUSC superfamily inner membrane protein |
| RA | 1,023,771 | A→T | 79.2% | V38E (GTA→GAA) | yccS ← | putative transporter, FUSC superfamily inner membrane protein |
| RA | 1,034,751 | Δ1 bp | 77.8% | coding (1498/1794 nt) | hyaB → | hydrogenase 1, large subunit |
| RA | 1,035,846 | C→A | 15.2% | A26E (GCG→GAG) | hyaD → | hydrogenase 1 maturation protease |
| RA | 1,070,115 | C→A | 74.0% | P80P (CCG→CCT) | rutF ← | flavin:NADH reductase |
| RA | 1,079,672 | G→A | 16.3% | R123H (CGC→CAC) | putP → | proline:sodium symporter |
| RA | 1,087,715 | C→T | 77.2% | M44I (ATG→ATA) | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | 1,087,795:1 | +G | 100% | coding (52/1326 nt) | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | 1,100,233 | G→A | 100% | intergenic (+39/‑63) | ycdY → / → ycdZ | redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein |
| RA | 1,117,238 | G→A | 80.6% | M144I (ATG→ATA) | yceA → | putative rhodanese‑related sulfurtransferase |
| RA | 1,123,357 | (A)6→5 | 100% | intergenic (‑84/+50) | yceB ← / ← grxB | lipoprotein, DUF1439 family/glutaredoxin 2 (Grx2) |
| RA | 1,143,125 | C→T | 100% | D415N (GAC→AAC) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,193,289 | T→A | 24.0% | Q162L (CAG→CTG) | mnmA ← | tRNA(Gln,Lys,Glu) U34 2‑thiouridylase |
| RA | 1,197,739 | A→G | 100% | S167P (TCC→CCC) | ymfE ← | e14 prophage; putative inner membrane protein |
| RA | 1,224,157 | A→G | 76.8% | intergenic (+250/+122) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,239 | A→T | 21.1% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 20.0% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,292,944 | T→C | 100% | intergenic (‑22/‑583) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,315,705 | T→C | 21.6% | K22K (AAA→AAG) | yciF ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,340,547 | A→G | 74.4% | E102G (GAA→GGA) | yciS → | DUF1049 family inner membrane protein, function unknown |
| RA | 1,368,184 | A→T | 78.9% | M36L (ATG→TTG) | pspA → | regulatory protein for phage‑shock‑protein operon |
| RA | 1,401,844 | A→G | 100% | I471T (ATC→ACC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| RA | 1,413,709 | T→C | 23.5% | E11G (GAA→GGA) | ydaC ← | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| RA | 1,434,459 | C→T | 100% | intergenic (‑235/+499) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,441,833 | G→C | 16.7% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,835 | A→T | 17.1% | intergenic (‑92/+19) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 17.1% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,450,608 | (T)6→5 | 100% | coding (742/2274 nt) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,460,438 | T→C | 15.4% | L462S (TTG→TCG) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| RA | 1,474,861 | (G)5→4 | 100% | coding (641/861 nt) | ydbC → | putative NAD(P)‑binding oxidoreductase |
| RA | 1,501,912 | T→A | 100% | I117I (ATT→ATA) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
| RA | 1,515,267 | A→T | 73.7% | D169V (GAT→GTT) | ydcV → | putative ABC transporter permease |
| RA | 1,519,159 | A→T | 21.8% | T45S (ACA→TCA) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| RA | 1,530,076:1 | (A)7→8 | 100% | coding (155/483 nt) | ydcD → | putative immunity protein for RhsE |
| RA | 1,533,713 | A→C | 15.5% | F47V (TTT→GTT) | yddH ← | flavin reductase like‑protein |
| RA | 1,564,601 | A→G | 72.4% | F378S (TTT→TCT) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
| RA | 1,580,094 | C→T | 100% | D233N (GAT→AAT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,580,128 | A→G | 21.5% | F221F (TTT→TTC) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,584,031 | A→G | 75.3% | intergenic (‑72/+176) | safA ← / ← ydeP | two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase |
| RA | 1,586,311 | T→A | 75.0% | H59L (CAC→CTC) | ydeP ← | putative oxidoreductase |
| RA | 1,602,188 | T→C | 78.3% | I233I (ATT→ATC) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,609,555 | Δ1 bp | 16.2% | coding (1126/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,609,561:1 | +C | 15.8% | coding (1120/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,652,242 | T→G | 83.0% | pseudogene (692/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,665,195:1 | (T)7→8 | 100% | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| RA | 1,681,932 | T→C | 100% | P33P (CCA→CCG) | ydgC ← | GlpM family inner membrane protein |
| RA | 1,688,184 | G→T | 67.0% | A65E (GCG→GAG) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,712,306:1 | (T)7→8 | 100% | intergenic (+148/‑463) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,518 | (C)6→5 | 100% | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,715,953 | T→C | 27.4% | K424E (AAA→GAA) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | 1,720,629 | T→C | 74.4% | T66A (ACT→GCT) | slyA ← | global transcriptional regulator |
| RA | 1,720,828 | C→T | 18.5% | intergenic (‑4/‑197) | slyA ← / → ydhI | global transcriptional regulator/DUF1656 family putative inner membrane efflux pump associated protein |
| RA | 1,728,444 | C→A | 100% | T33N (ACC→AAC) | rnt → | RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
| RA | 1,806,158 | T→C | 73.8% | intergenic (‑75/‑212) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,809,610 | A→G | 80.0% | E77E (GAA→GAG) | yniC → | 2‑deoxyglucose‑6‑P phosphatase |
| RA | 1,827,031 | T→A | 100% | D410V (GAT→GTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,835,227 | T→C | 80.6% | F140F (TTT→TTC) | ydjZ → | TVP38/TMEM64 family inner membrane protein |
| RA | 1,841,079 | C→A | 73.2% | A109S (GCG→TCG) | ynjF ← | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| RA | 1,913,273 | T→C | 77.3% | N515S (AAC→AGC) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,925,214 | T→C | 72.3% | I36T (ATC→ACC) | holE → | DNA polymerase III, theta subunit |
| RA | 1,946,955 | G→A | 18.0% | A141V (GCC→GTC) | ruvC ← | component of RuvABC resolvasome, endonuclease |
| RA | 1,983,761 | C→T | 100% | E437K (GAA→AAA) | araG ← | L‑arabinose ABC transporter ATPase |
| RA | 2,014,867 | A→G | 79.1% | I547V (ATA→GTA) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,019,158 | G→A | 73.5% | S258N (AGT→AAT) | fliK → | flagellar hook‑length control protein |
| RA | 2,033,458 | T→G | 22.8% | I9I (ATA→ATC) | yedR ← | inner membrane protein |
| RA | 2,036,066 | A→C | 78.3% | T78P (ACG→CCG) | hchA → | glyoxalase III and Hsp31 molecular chaperone |
| RA | 2,071,321 | A→G | 100% | intergenic (+110/‑218) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,101,510 | (A)8→7 | 100% | pseudogene (235/349 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,181,824 | A→G | 75.0% | A243A (GCA→GCG) | yegV → | putative kinase |
| RA | 2,191,432 | C→T | 100% | G72S (GGC→AGC) | yehC ← | putative periplasmic pilin chaperone |
| RA | 2,210,811 | C→T | 100% | pseudogene (1712/2001 nt) | yehQ → | pseudogene |
| RA | 2,221,689 | G→A | 78.3% | R101C (CGC→TGC) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,229,392 | A→G | 77.9% | intergenic (+327/+46) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,250,674 | Δ1 bp | 100% | coding (958/1050 nt) | yeiH → | UPF0324 family inner membrane protein |
| RA | 2,269,044 | T→C | 74.1% | F64S (TTC→TCC) | lpxT → | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase |
| RA | 2,278,298 | C→T | 100% | intergenic (‑61/+272) | yejG ← / ← bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,281,279 | A→T | 24.9% | A216A (GCA→GCT) | yejH → | putative ATP‑dependent DNA or RNA helicase |
| RA | 2,365,836 | T→C | 74.4% | intergenic (‑216/‑92) | ais ← / → arnB | putative LPS core heptose(II)‑phosphate phosphatase/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,379,796 | C→T | 76.1% | R283H (CGC→CAC) | menF ← | isochorismate synthase 2 |
| RA | 2,436,937 | A→T | 100% | D305E (GAT→GAA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,469,656:1 | (T)7→8 | 100% | coding (526/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,485,264 | G→A | 16.6% | W297* (TGG→TGA) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 2,501,197 | A→C | 79.3% | N23T (AAC→ACC) | ypdC → | putative DNA‑binding protein |
| RA | 2,509,578 | C→T | 76.6% | intergenic (‑152/‑52) | glk ← / → yfeO | glucokinase/putative ion channel protein |
| RA | 2,518,507 | G→A | 78.7% | R14H (CGC→CAC) | yfeC → | DUF1323 family putative DNA‑binding protein |
| RA | 2,521,967 | C→A | 100% | A171S (GCG→TCG) | xapR ← | transcriptional activator of xapAB |
| RA | 2,563,518:1 | (A)5→6 | 100% | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,564,525 | G→A | 100% | M1M (ATG→ATA) † | yffS → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,567,608 | Δ1 bp | 74.0% | coding (500/1227 nt) | eutH ← | ethanolamine transporter |
| RA | 2,596,874 | Δ1 bp | 15.3% | intergenic (‑137/+31) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,600,288 | C→T | 100% | S128L (TCG→TTG) | gcvR → | transcriptional repressor, regulatory protein accessory to GcvA |
| RA | 2,653,367 | G→A | 16.7% | intergenic (+28/+790) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,653,372 | T→C | 16.0% | intergenic (+33/+785) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,671,759 | C→A | 72.7% | R179R (CGG→AGG) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| RA | 2,682,158 | T→C | 76.1% | K196K (AAA→AAG) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,751,923 | T→C | 81.7% | G43G (GGT→GGC) | recN → | recombination and repair protein |
| RA | 2,795,630 | (A)6→5 | 100% | coding (1378/1401 nt) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,810,756 | G→A | 100% | intergenic (+77/‑14) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,758 | G→A | 100% | intergenic (+79/‑12) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,817,931 | T→C | 22.5% | intergenic (‑71/+128) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,827,362 | A→G | 78.1% | M1M (ATG→GTG) † | srlB → | glucitol/sorbitol‑specific enzyme IIA component of PTS |
| RA | 2,852,356 | T→A | 100% | L74Q (CTG→CAG) | hypD → | hydrogenase maturation protein |
| RA | 2,887,352 | T→A | 100% | intergenic (‑133/+226) | ygcB ← / ← cysH | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| RA | 2,966,637 | A→G | 84.2% | S600P (TCA→CCA) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 2,981,031 | G→T | 73.6% | C384* (TGC→TGA) | araE ← | arabinose transporter |
| RA | 2,989,323 | (A)8→7 | 100% | coding (20/483 nt) | yqeJ → | uncharacterized protein |
| RA | 2,993,111 | (A)5→4 | 100% | coding (1018/1377 nt) | ygeH → | putative transcriptional regulator |
| RA | 2,994,290 | (T)5→4 | 100% | pseudogene (352/444 nt) | pbl → | pseudogene, peptidoglycan‑binding enzyme family |
| RA | 3,016,405 | C→T | 77.8% | L116F (CTT→TTT) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,134,852 | A→G | 74.8% | intergenic (+29/+20) | yghT → / ← pitB | putative ATP‑binding protein/phosphate transporter |
| RA | 3,181,294 | G→C | 15.1% | D292H (GAT→CAT) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,195,102 | G→A | 76.6% | intergenic (+277/‑39) | ibsD → / → ibsE | toxic membrane protein/toxic membrane protein |
| RA | 3,275,682 | (A)5→4 | 100% | coding (401/1572 nt) | garD → | D‑galactarate dehydrogenase |
| RA | 3,360,916 | (A)6→5 | 100% | intergenic (+300/‑260) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,379,744 | G→T | 82.1% | T85N (ACC→AAC) | zapE ← | divisome ATPase |
| RA | 3,410,649 | A→G | 19.8% | I124V (ATC→GTC) | dusB → | tRNA‑dihydrouridine synthase B |
| RA | 3,423,776 | G→T | 23.8% | noncoding (12/120 nt) | rrfD ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 15.6% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,452,057 | A→T | 100% | I77N (ATC→AAC) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,466,858 | G→C | 16.1% | A45G (GCC→GGC) | bfd ← | bacterioferritin‑associated ferredoxin |
| RA | 3,490,088 | A→G | 15.7% | G31G (GGT→GGC) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,574,062 | A→T | 17.3% | C273S (TGC→AGC) | asd ← | aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| RA | 3,582,272 | G→A | 20.8% | C137Y (TGT→TAT) | yhhZ → | putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
| RA | 3,594,073 | G→T | 16.6% | T45N (ACC→AAC) | livG ← | branched‑chain amino acid ABC transporter ATPase |
| RA | 3,622,796 | T→G | 100% | L1202R (CTG→CGG) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,636,979 | A→T | 20.3% | D144E (GAT→GAA) | yhiN ← | putative oxidoreductase |
| RA | 3,648,042 | T→C | 100% | intergenic (‑254/‑486) | dinQ ← / → arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| RA | 3,651,556 | C→T | 78.7% | pseudogene (266/741 nt) | yhiS → | pseudogene |
| RA | 3,658,780 | A→G | 80.0% | T139A (ACG→GCG) | gadE → | gad regulon transcriptional activator |
| RA | 3,678,937 | T→A | 16.1% | Q84L (CAG→CTG) | yhjH ← | cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
| RA | 3,701,868 | C→A | 77.3% | R334L (CGT→CTT) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,704,719 | G→T | 17.5% | P15T (CCG→ACG) | dppC ← | dipeptide/heme ABC transporter permease |
| RA | 3,705,970 | G→A | 16.9% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,971 | C→A | 16.8% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,984 | T→G | 24.0% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 24.3% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,048 | G→T | 23.4% | intergenic (‑258/+50) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,707,989 | A→G | 75.7% | intergenic (‑284/+627) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,795,591 | G→A | 21.8% | S221S (TCG→TCA) | waaF → | ADP‑heptose:LPS heptosyltransferase II |
| RA | 3,802,190 | T→C | 78.9% | K290R (AAA→AGA) | waaO ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase |
| RA | 3,828,954 | T→C | 16.3% | S4P (TCC→CCC) | xanP → | xanthine permease |
| RA | 3,853,909 | A→G | 100% | intergenic (+267/‑13) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,891,502 | C→G | 15.5% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,910,662 | A→T | 100% | D288E (GAT→GAA) | pstS ← | phosphate ABC transporter periplasmic binding protein |
| RA | 3,950,468 | G→T | 100% | intergenic (+48/‑39) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
| RA | 3,965,149 | A→T | 76.3% | V161E (GTG→GAG) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 3,971,690 | A→C | 100% | Q144P (CAG→CCG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 4,105,396 | A→T | 22.8% | L92Q (CTG→CAG) | cpxR ← | response regulator in two‑component regulatory system with CpxA |
| RA | 4,113,474 | T→A | 15.2% | L61* (TTG→TAG) ‡ | uspD → | stress‑induced protein |
| RA | 4,113,475 | G→A | 15.2% | L61L (TTG→TTA) ‡ | uspD → | stress‑induced protein |
| RA | 4,137,180 | C→G | 16.7% | A160P (GCA→CCA) | yijF ← | DUF1287 family protein |
| RA | 4,168,540 | T→A | 100% | intergenic (+93/‑101) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| RA | 4,177,171 | T→A | 15.4% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,235,689:1 | +A | 100% | intergenic (+282/‑217) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| JC | 4,242,942 | Δ66 bp | 100% | coding (510‑575/891 nt) | malG ← | maltose transporter subunit |
| RA | 4,261,155 | A→T | 17.7% | D186V (GAT→GTT) | yjbM → | uncharacterized protein |
| RA | 4,296,060 | C→T | 34.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,310,728 | T→C | 78.6% | I85V (ATT→GTT) | alsA ← | D‑allose ABC transporter ATPase |
| RA | 4,318,840 | A→T | 77.9% | L256Q (CTG→CAG) | phnJ ← | carbon‑phosphorus lyase, SAM‑dependent |
| RA | 4,323,955 | T→G | 78.1% | N133T (AAC→ACC) | phnD ← | phosphonate ABC transporter periplasmic binding protein |
| RA | 4,349,085:1 | +C | 100% | intergenic (‑341/+230) | dcuB ← / ← dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
| RA | 4,490,055 | T→G | 100% | E3D (GAA→GAC) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,544,598 | A→G | 15.1% | N99D (AAT→GAT) | fimC → | periplasmic chaperone |
| RA | 4,603,361 | A→G | 16.7% | intergenic (‑503/‑116) | yjjP ← / → yjjQ | DUF1212 family inner membrane protein/putative transcriptional regulator |
| RA | 4,615,859 | T→G | 100% | T403P (ACC→CCC) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| RA | 4,627,706 | T→G | 18.8% | F131C (TTT→TGT) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| RA | 4,631,700 | T→C | 100% | L323P (CTT→CCT) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423805–3424234 | 3424591–3424238 | 5–787 | 105 [0] | [62] 66 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16583 | NA (NA) | 16 (0.110) | 8/168 | NT | NA | noncoding (1197/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16604 | NA (NA) | noncoding (1218/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 16653 | NA (NA) | 20 (0.140) | 12/164 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 50327 = | NA (NA) | 8 (0.060) | 7/164 | NT | NA | noncoding (1/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 50360 = | NA (NA) | noncoding (34/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 72190 | NA (NA) | 7 (0.050) | 5/164 | NT | NA | noncoding (55/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 72220 | NA (NA) | noncoding (85/85 nt) | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 173588 | NA (NA) | 10 (0.070) | 5/164 | NT | NA | noncoding (85/85 nt) | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2443819 = | NA (NA) | noncoding (31/80 nt) | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 213635 | NA (NA) | 10 (0.070) | 5/164 | NT | NA | noncoding (4/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 213668 | NA (NA) | noncoding (37/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 224090 | NA (NA) | 14 (0.100) | 9/168 | NT | NA | noncoding (320/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224102 | NA (NA) | noncoding (332/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 224591 = | NA (NA) | 8 (0.060) | 6/162 | NT | NA | noncoding (821/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224650 = | NA (NA) | noncoding (880/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 49 (0.350) | 15/164 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225889 = | NA (NA) | 25 (0.180) | 13/164 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 51 (0.360) | 18/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 226704 = | NA (NA) | 27 (0.190) | 7/170 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227075 | 7 (0.050) | 24 (0.170) | 10/170 | NT | 78.2% | noncoding (1317/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227092 | NA (NA) | noncoding (1334/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 227242 = | NA (NA) | 31 (0.220) | 13/166 | NT | NA | noncoding (1484/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 227264 = | NA (NA) | noncoding (1506/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227247 | NA (NA) | 14 (0.100) | 7/166 | NT | NA | noncoding (1489/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227257 | NA (NA) | noncoding (1499/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 39 (0.280) | 9/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 51 (0.370) | 14/164 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228022 | NA (NA) | 42 (0.300) | 9/164 | NT | NA | noncoding (2264/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228033 | NA (NA) | noncoding (2275/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 42 (0.290) | 13/170 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 35 (0.250) | 12/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 159 (1.160) | 92/162 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 24 (0.170) | 10/164 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 19 (0.130) | 6/172 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 20 (0.150) | 9/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274653 | NA (NA) | 44 (0.310) | 9/170 | NT | NA | noncoding (497/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274663 | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 24 (0.170) | 9/170 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274882 | NA (NA) | 22 (0.160) | 11/168 | NT | NA | noncoding (268/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274899 | NA (NA) | noncoding (251/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 32 (0.220) | 16/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 275007 | NA (NA) | 63 (0.430) | 17/172 | NT | NA | noncoding (143/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 275025 | NA (NA) | noncoding (125/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 22 (0.170) | 9/158 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 21 (0.160) | 6/158 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315642 = | NA (NA) | 30 (0.210) | 13/168 | NT | NA | noncoding (414/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315671 = | NA (NA) | noncoding (443/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 28 (0.200) | 14/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315695 | NA (NA) | 11 (0.080) | 6/166 | NT | NA | noncoding (467/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315719 | NA (NA) | noncoding (491/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 12 (0.080) | 8/172 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 40 (0.300) | 11/160 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 349876 | 93 (0.620) | 28 (0.200) | 6/164 | NT | 24.6% | noncoding (272/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349938 | NA (NA) | noncoding (334/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 354733 | NA (NA) | 15 (0.110) | 9/164 | NT | NA | noncoding (135/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 354765 | NA (NA) | noncoding (167/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 32 (0.230) | 7/164 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381825 | NA (NA) | 16 (0.120) | 8/164 | NT | NA | noncoding (566/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381833 | NA (NA) | noncoding (574/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381837 | NA (NA) | 11 (0.080) | 7/166 | NT | NA | noncoding (578/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381852 | NA (NA) | noncoding (593/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381910 | NA (NA) | 52 (0.370) | 11/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382015 | NA (NA) | 11 (0.080) | 5/170 | NT | NA | noncoding (756/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382034 | NA (NA) | noncoding (775/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382110 = | NA (NA) | 13 (0.090) | 4/168 | NT | NA | noncoding (851/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382141 = | NA (NA) | noncoding (882/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382242 | NA (NA) | 25 (0.180) | 9/166 | NT | NA | noncoding (983/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382260 | NA (NA) | noncoding (1001/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 21 (0.150) | 12/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382287 | NA (NA) | 7 (0.050) | 5/166 | NT | NA | noncoding (1028/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382306 | NA (NA) | noncoding (1047/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 20 (0.140) | 10/168 | NT | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 580768 | 118 (0.780) | 19 (0.150) | 12/146 | NT | 15.2% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 116 (0.940) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 580891 = | 66 (0.440) | 11 (0.080) | 5/166 | NT | 15.8% | coding (58/546 nt) | nohD | DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 580924 = | 56 (0.400) | coding (91/546 nt) | nohD | DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 729981 = | NA (NA) | 5 (0.040) | 5/168 | NT | NA | coding (399/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 730006 = | NA (NA) | coding (424/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 17 (0.120) | 9/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 734168 = | NA (NA) | 34 (0.240) | 14/166 | NT | NA | pseudogene (36/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | 734186 = | NA (NA) | pseudogene (54/1521 nt) | rhsO | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | = 762891 | NA (NA) | 7 (0.050) | 4/164 | NT | NA | noncoding (130/167 nt) | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 762924 | NA (NA) | noncoding (163/167 nt) | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 837541 = | NA (NA) | 6 (0.040) | 4/166 | NT | NA | noncoding (3/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 837571 = | NA (NA) | noncoding (33/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 1011918 = | NA (NA) | 8 (0.060) | 12/162 | NT | NA | intergenic (+47/‑83) | uup/pqiA | replication regulatory ABC‑F family DNA‑binding ATPase/paraquat‑inducible, SoxRS‑regulated inner membrane protein |
| ? | NC_000913 | 1011945 = | NA (NA) | noncoding (27/29 nt) | REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 1040546 | NA (NA) | 9 (0.070) | 4/158 | NT | NA | noncoding (4/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1040578 | NA (NA) | noncoding (36/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1040547 = | NA (NA) | 19 (0.140) | 9/158 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1040579 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
| * | ? | NC_000913 | 1247020 = | 103 (0.690) | 18 (0.130) | 9/160 | NT | 16.8% | coding (357/1698 nt) | treA | periplasmic trehalase |
| ? | NC_000913 | 1247061 = | 86 (0.640) | coding (316/1698 nt) | treA | periplasmic trehalase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 141 (0.980) | 90/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1432763 = | NA (NA) | 11 (0.080) | 7/168 | NT | NA | coding (353/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | NC_000913 | 1432785 = | NA (NA) | coding (375/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 64 (0.850) +44 bp |
13/90 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1636407 | 86 (0.570) | 20 (0.160) | 9/146 | NT | 19.2% | intergenic (‑40/‑349) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| ? | NC_000913 | = 1636432 | 98 (0.800) | intergenic (‑65/‑324) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage | |||||
| * | ? | NC_000913 | 1843724 = | NA (NA) | 8 (0.060) | 6/164 | NT | NA | noncoding (1/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1843750 = | NA (NA) | noncoding (27/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 1843797 | NA (NA) | 9 (0.060) | 8/166 | NT | NA | noncoding (74/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 1843810 | NA (NA) | noncoding (87/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 1929976 | NA (NA) | 13 (0.090) | 7/166 | NT | NA | noncoding (54/84 nt) | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 1930006 | NA (NA) | noncoding (84/84 nt) | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 122 (0.890) | 70/162 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 2066832 | 0 (0.000) | 22 (0.160) | 12/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2133465 | NA (NA) | 17 (0.200) +39 bp |
6/100 | NT | NA | noncoding (34/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3706060 | NA (NA) | noncoding (98/98 nt) | RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 2146653 | NA (NA) | 8 (0.060) | 5/164 | NT | NA | noncoding (54/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2146683 | NA (NA) | noncoding (84/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2304590 | 98 (0.650) | 23 (0.170) | 9/164 | NT | 20.3% | noncoding (174/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304721 | NA (NA) | noncoding (305/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 2443835 | NA (NA) | 11 (0.080) | 7/164 | NT | NA | noncoding (47/80 nt) | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2443868 | NA (NA) | noncoding (80/80 nt) | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2539608 = | NA (NA) | 11 (0.080) | 8/166 | NT | NA | noncoding (2/36 nt) | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2539638 = | NA (NA) | noncoding (32/36 nt) | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2568139 = | NA (NA) | 6 (0.040) | 3/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2568169 = | NA (NA) | noncoding (31/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 2568139 = | NA (NA) | 7 (0.050) | 4/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 3231282 = | NA (NA) | noncoding (31/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 2593024 | NA (NA) | 10 (0.070) | 5/164 | NT | NA | noncoding (47/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2593056 | NA (NA) | noncoding (79/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2618037 | NA (NA) | 11 (0.080) | 6/166 | NT | NA | intergenic (+100/+38) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation |
| ? | NC_000913 | = 2618053 | NA (NA) | intergenic (+116/+22) | yfgD/hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 73 (0.520) | 13/166 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2727825 = | NA (NA) | 10 (0.070) | 7/166 | NT | NA | noncoding (1360/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727893 = | NA (NA) | noncoding (1292/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 71 (0.490) | 15/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2729630 = | NA (NA) | 52 (0.370) | 12/168 | NT | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2798052 = | NA (NA) | 17 (0.120) | 8/174 | NT | NA | intergenic (+8/+39) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated |
| ? | NC_000913 | 2798084 = | NA (NA) | intergenic (+40/+7) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
| * | ? | NC_000913 | = 2837464 | NA (NA) | 14 (0.100) | 9/162 | NT | NA | intergenic (‑39/+114) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| ? | NC_000913 | = 2837491 | NA (NA) | noncoding (27/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3214896 = | NA (NA) | 7 (0.050) | 5/168 | NT | NA | noncoding (5/33 nt) | REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3214925 = | NA (NA) | intergenic (+37/+42) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
| * | ? | NC_000913 | 3216603 = | NA (NA) | 8 (0.060) | 6/170 | NT | NA | noncoding (3/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3216630 = | NA (NA) | noncoding (30/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3216644 | NA (NA) | 8 (0.060) | 5/164 | NT | NA | noncoding (44/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3216674 | NA (NA) | noncoding (74/78 nt) | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3220891 | NA (NA) | 11 (0.080) | 8/154 | NT | NA | noncoding (12/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3220898 | NA (NA) | noncoding (19/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3277819 = | NA (NA) | 10 (0.070) | 9/162 | NT | NA | noncoding (1/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3277844 = | NA (NA) | noncoding (26/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3281702 = | NA (NA) | 8 (0.060) | 6/164 | NT | NA | noncoding (1/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3281734 = | NA (NA) | noncoding (33/82 nt) | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3336878 = | NA (NA) | 9 (0.060) | 7/168 | NT | NA | intergenic (‑75/+85) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component |
| ? | NC_000913 | 3336905 = | NA (NA) | intergenic (‑102/+58) | ibaG/mlaB | acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component | |||||
| * | ? | NC_000913 | = 3423804 | 0 (0.000) | 66 (0.470) | 11/166 | NT | 100% | intergenic (‑17/+76) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4040488 = | NA (NA) | intergenic (+65/‑29) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3426897 = | NA (NA) | 17 (0.120) | 7/168 | NT | NA | intergenic (‑114/+61) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913 | 3426933 = | NA (NA) | intergenic (‑150/+25) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 17 (0.120) | 10/164 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3620116 | NA (NA) | 10 (0.070) | 5/166 | NT | 100% | coding (925/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620152 | 0 (0.000) | coding (961/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620123 = | NA (NA) | 7 (0.050) | 5/166 | NT | 100% | coding (932/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620147 = | 0 (0.000) | coding (956/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 18 (0.130) | 8/166 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 29 (0.210) | 9/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3621232 | NA (NA) | 11 (0.080) | 5/168 | NT | 100% | coding (2041/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3621274 | 0 (0.000) | coding (2083/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3621557 = | NA (NA) | 6 (0.040) | 4/170 | NT | NA | coding (2366/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3621605 = | NA (NA) | coding (2414/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3622540 = | NA (NA) | 25 (0.180) | 9/168 | NT | 100% | coding (3349/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3622556 = | 0 (0.000) | coding (3365/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3650792 | NA (NA) | 10 (0.070) | 8/166 | NT | NA | noncoding (81/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3650805 | NA (NA) | noncoding (94/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3763978 = | 0 (0.000) | 8 (0.060) | 3/170 | NT | 32.0% | coding (1796/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3764008 = | 34 (0.240) | coding (1826/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3765457 = | NA (NA) | 30 (0.210) | 10/170 | NT | 15.9% | coding (3275/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3767241 = | 166 (1.100) | pseudogene (21/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | NC_000913 | 3941549 = | 58 (0.390) | 15 (0.110) | 3/168 | NT | 21.5% | intergenic (‑222/‑259) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4035245 = | NA (NA) | intergenic (+92/‑286) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3943654 | NA (NA) | 7 (0.050) | 5/164 | NT | 19.7% | intergenic (+144/‑50) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037431 | 31 (0.210) | intergenic (+96/‑88) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4037481 | 23 (0.150) | 44 (0.310) | 12/170 | NT | 66.7% | intergenic (+146/‑38) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4037511 | NA (NA) | intergenic (+176/‑8) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4102697 = | NA (NA) | 10 (0.070) | 9/168 | NT | NA | noncoding (2/26 nt) | REP300 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP300 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4102721 = | NA (NA) | noncoding (26/26 nt) | REP300 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP300 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 4103470 = | NA (NA) | 10 (0.070) | 8/164 | NT | NA | coding (649/675 nt) | yiiM | 6‑N‑hydroxylaminopurine resistance protein |
| ? | NC_000913 | 4103494 = | NA (NA) | coding (673/675 nt) | yiiM | 6‑N‑hydroxylaminopurine resistance protein | |||||
| * | ? | NC_000913 | = 4148478 | NA (NA) | 13 (0.090) | 9/164 | NT | NA | noncoding (49/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4148511 | NA (NA) | noncoding (82/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4295918 | 21 (0.140) | 16 (0.120) | 6/164 | NT | 45.3% | noncoding (84/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4295934 | NA (NA) | noncoding (100/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4295947 | NA (NA) | 24 (0.170) | 8/164 | NT | 16.2% | noncoding (113/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4295980 | 135 (0.900) | noncoding (146/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4344813 = | NA (NA) | 13 (0.100) | 7/160 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | NC_000913 | 4344842 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4460417 = | NA (NA) | 25 (0.180) | 10/168 | NT | NA | noncoding (3/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4460445 = | NA (NA) | noncoding (31/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4508581 = | 4 (0.030) | 20 (0.140) | 11/166 | NT | 78.9% | noncoding (99/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 4508599 = | 7 (0.050) | noncoding (81/1221 nt) | IS30 | repeat region | |||||