Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F204 I1 R1 117 93.2 4682243 93.4% 4373214 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,370,670 C→A intergenic (‑258/‑18) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6700CA99.1% 385.8 / NA 107intergenic (‑258/‑18)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (49/57);  total (50/57)
Fisher's exact test for biased strand distribution p-value = 4.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 108 total aligned reads displayed.

TTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTGGCGGCATCGTT  >  NC_000913/4370573‑4370765
                                                                                                 |                                                                                               
ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtatc                                                                                               <  1:1037165/100‑1 (MQ=255)
 tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCa                                                                                              <  1:636493/100‑1 (MQ=255)
 tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCa                                                                                              <  2:1328302/100‑1 (MQ=255)
 tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCa                                                                                              <  1:1889889/100‑1 (MQ=255)
  cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCaa                                                                                             >  1:1941413/1‑100 (MQ=255)
    cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCaaan                                                                                           <  1:2230332/100‑2 (MQ=255)
    cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAg                                                                                           <  2:216377/100‑1 (MQ=255)
    cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAg                                                                                           <  2:1684086/100‑1 (MQ=255)
     ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAgg                                                                                          >  2:1028620/1‑100 (MQ=255)
       ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGgag                                                                                        <  2:1545078/100‑1 (MQ=255)
         gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAACCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGagag                                                                                      >  2:1437863/1‑100 (MQ=255)
          aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGt                                                                                     <  1:80170/100‑1 (MQ=255)
           aGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGtt                                                                                    <  2:366222/100‑1 (MQ=255)
            ggggCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTa                                                                                   <  1:468365/100‑1 (MQ=255)
            ggggCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTa                                                                                   <  2:1406969/100‑1 (MQ=255)
              ggCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATc                                                                                 <  1:1196718/100‑1 (MQ=255)
              ggCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATc                                                                                 <  2:1941406/100‑1 (MQ=255)
                cGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCaa                                                                               >  2:1522753/1‑100 (MQ=255)
                  aaGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATg                                                                             <  2:807355/100‑1 (MQ=255)
                  aaGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATg                                                                             <  1:85570/100‑1 (MQ=255)
                    gCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGaa                                                                           <  2:555157/100‑1 (MQ=255)
                     ccTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGaa                                                                           >  1:113799/1‑99 (MQ=255)
                     ccTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAat                                                                          <  1:702207/100‑1 (MQ=255)
                      cTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAata                                                                         >  2:73381/1‑100 (MQ=255)
                        cATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATAtt                                                                       >  2:41347/1‑100 (MQ=255)
                        cATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATAtt                                                                       <  1:721473/100‑1 (MQ=255)
                         aTCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATAtt                                                                       <  1:575463/99‑1 (MQ=255)
                         aTCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTc                                                                      >  1:2222607/1‑100 (MQ=255)
                           ccccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCgn                                                                    <  2:362202/100‑2 (MQ=255)
                           ccccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGt                                                                    >  2:954516/1‑100 (MQ=255)
                            cccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTc                                                                   >  2:1035963/1‑100 (MQ=255)
                            cccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTc                                                                   >  2:1304877/1‑100 (MQ=255)
                            cccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATAAAAGGAGAGTTATCAATGAATATTCGTc                                                                   >  1:528396/1‑100 (MQ=255)
                             ccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTcc                                                                  >  1:234314/1‑100 (MQ=255)
                                tttCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCAtt                                                               >  2:2046771/1‑100 (MQ=255)
                                   ctctGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa                                                            >  2:848284/1‑100 (MQ=255)
                                       ggTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt                                                        >  2:1165694/1‑100 (MQ=255)
                                       ggTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt                                                        >  2:854749/1‑100 (MQ=255)
                                         tCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcg                                                      <  1:954518/100‑1 (MQ=255)
                                         tCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcg                                                      <  1:41349/100‑1 (MQ=255)
                                         tCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcg                                                      <  1:1165697/100‑1 (MQ=255)
                                          cACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcgc                                                     >  1:62706/1‑100 (MQ=255)
                                          cACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcgc                                                     >  1:1247443/1‑100 (MQ=255)
                                          cACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATcgc                                                     >  2:2233737/1‑100 (MQ=255)
                                            ccAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGt                                                   >  2:2239008/1‑100 (MQ=255)
                                            ccAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGt                                                   >  2:292928/1‑100 (MQ=255)
                                              aGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGa                                                 <  2:1688820/100‑1 (MQ=255)
                                              aGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGACTTATCAATGAATATACGTCCATTGCATGAGCGCGTg                                                  >  1:1512658/1‑99 (MQ=255)
                                               gCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGAt                                                <  1:1035965/100‑1 (MQ=255)
                                               gCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGAt                                                >  1:1303756/1‑100 (MQ=255)
                                                 cGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCg                                              <  1:1028622/100‑1 (MQ=255)
                                                 cGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATAGTCGTCCATTGCATGATCGCGTGATCg                                              <  2:528394/100‑1 (MQ=255)
                                                 cGGGAAACCACATAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTAGCAATGAATATTCGTCCATTGCATGATCGCGTGATCg                                              >  1:2224733/1‑100 (MQ=255)
                                                   ggAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTc                                            <  1:379955/100‑1 (MQ=255)
                                                   ggAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTc                                            >  2:1782007/1‑100 (MQ=255)
                                                   ggAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTc                                            <  1:718225/100‑1 (MQ=255)
                                                   ggAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTc                                            >  1:669702/1‑100 (MQ=255)
                                                   ggAAACCACGCAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTc                                            <  2:1540134/100‑1 (MQ=255)
                                                    gAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCa                                           <  2:160130/100‑1 (MQ=255)
                                                      aaCCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAg                                         <  1:1831588/100‑1 (MQ=255)
                                                      aaCCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAg                                         <  1:1831714/100‑1 (MQ=255)
                                                        ccACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCg                                       <  2:1601583/100‑1 (MQ=255)
                                                        ccACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCg                                       <  1:73383/100‑1 (MQ=255)
                                                            gTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTaaa                                   >  1:643767/1‑100 (MQ=255)
                                                              aaGCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAaaga                                 <  1:2046778/100‑1 (MQ=255)
                                                                gCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAaagaag                               <  1:2220282/100‑1 (MQ=255)
                                                                gCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAaagaag                               <  2:727894/100‑1 (MQ=255)
                                                                gCTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAaagaag                               <  2:1771664/100‑1 (MQ=255)
                                                                 cTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGt                              <  1:854751/100‑1 (MQ=255)
                                                                 cTCCGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGt                              >  2:72648/1‑100 (MQ=255)
                                                                   ccGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTg                            >  1:2141785/1‑100 (MQ=255)
                                                                   ccGGCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTg                            >  1:2175432/1‑100 (MQ=255)
                                                                     tccgatctccATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGaa                          <  2:1562165/92‑1 (MQ=255)
                                                                     ggCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGaa                          >  2:563037/1‑100 (MQ=255)
                                                                      gCGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGaaa                         <  1:1860266/100‑1 (MQ=255)
                                                                       cGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAAc                        <  1:2239016/100‑1 (MQ=255)
                                                                       cGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAAc                        >  1:1923894/1‑100 (MQ=255)
                                                                       cGTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAAc                        <  2:113797/100‑1 (MQ=255)
                                                                        gTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACt                       <  1:2138049/100‑1 (MQ=255)
                                                                        gTCACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACt                       <  2:2175425/100‑1 (MQ=255)
                                                                          cACCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTaa                     >  2:2156242/1‑100 (MQ=255)
                                                                           aCCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTaaa                    >  2:1359045/1‑100 (MQ=255)
                                                                           aCCCATAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTaaa                    >  2:1460750/1‑100 (MQ=255)
                                                                                tAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgc               >  1:1151818/1‑100 (MQ=255)
                                                                                tAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgc               <  2:1247440/100‑1 (MQ=255)
                                                                                tAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgc               >  2:2039023/1‑100 (MQ=255)
                                                                                tAACAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgc               <  1:848286/100‑1 (MQ=255)
                                                                                 aaCAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgct              <  2:62704/100‑1 (MQ=255)
                                                                                 aaCAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgct              <  2:2222599/100‑1 (MQ=255)
                                                                                 aaCAGATACGGACGTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgct              <  1:1359048/100‑1 (MQ=255)
                                                                                  aCAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgctg             >  1:2286076/1‑100 (MQ=255)
                                                                                   cagctgcGGACTTTATCACAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATctgctg             <  2:1512654/93‑1 (MQ=255)
                                                                                   cAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTgg            >  2:1718848/1‑100 (MQ=255)
                                                                                   cAGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTgg            >  1:1094733/1‑100 (MQ=255)
                                                                                    aGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTggc           <  1:1782012/100‑1 (MQ=255)
                                                                                    aGATACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTggc           <  1:39515/100‑1 (MQ=255)
                                                                                      aTACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTggcgg         <  1:1437867/100‑1 (MQ=255)
                                                                                       tACGGACTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTggcggc        >  2:344200/1‑100 (MQ=255)
                                                                                            aCTTTATCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTGGCGGCATCGt   >  1:2012504/1‑100 (MQ=255)
                                                                                             cTTTATCAAAGGAGAGTCATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTGGCGGCATCGtt  >  2:1467791/1‑100 (MQ=255)
                                                                                                 |                                                                                               
TTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGCGTGATCGTCAAGCGTAAAGAAGTTGAAACTAAATCTGCTGGCGGCATCGTT  >  NC_000913/4370573‑4370765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A