Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I3 R1 283 58.3 1819865 98.8% 1798026 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,398,054 Δ7 bp coding (643‑649/1848 nt) mutL → methyl‑directed mismatch repair protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4398054 4398060 7 65 [0] [0] 65 mutL methyl‑directed mismatch repair protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 43980530 (0.000)64 (1.130) 55/292 0.1 100% coding (642/1848 nt) mutL methyl‑directed mismatch repair protein
?NC_000913 4398061 = 0 (0.000)coding (650/1848 nt) mutL methyl‑directed mismatch repair protein

GATK/CNVnator alignment

N/A