Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F50 I3 R1	283	58.3	1819865	98.8%	1798026	150.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,577,694	G→A	H89Y (CAT→TAT)	mcrC ←	5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,577,694	0	G	A	100.0%	236.1 / NA	63	H89Y (CAT→TAT)	mcrC	5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/33); total (30/33)

GGTAATTTTCTATAAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATGATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAATACATACCCCAGGATAT  >  NC_000913/4577546‑4577840

ggTAATTTTCTATAAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAAt                                                                                                                                                  <  1:133724/151‑1 (MQ=255)

   aaTTTTCTATAAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTaa                                                                                                                                               <  1:499081/151‑1 (MQ=255)

    aTTTTCTATAAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTa                                                                                                                                                >  2:529541/1‑149 (MQ=255)

           ataAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGa                                                                                                                                         >  1:742458/1‑149 (MQ=255)

           ataAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGa                                                                                                                                         >  2:859871/1‑149 (MQ=255)

             aaaGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGcc                                                                                                                                     <  2:515866/151‑1 (MQ=255)

             aaaGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGcc                                                                                                                                     >  2:427115/1‑151 (MQ=255)

                  gAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGt                                                                                                                                 <  1:849438/150‑1 (MQ=255)

                     cGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTg                                                                                                                             <  1:198688/151‑1 (MQ=255)

                     cGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTg                                                                                                                             <  2:325104/151‑1 (MQ=255)

                     cGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTg                                                                                                                             <  1:28408/151‑1 (MQ=255)

                         cTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGtttt                                                                                                                         >  1:626528/1‑151 (MQ=255)

                                   gATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAActct                                                                                                               <  1:375317/151‑1 (MQ=255)

                                    aTAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAActct                                                                                                               >  1:441992/1‑150 (MQ=255)

                                      aGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTAt                                                                                                             <  1:568957/150‑1 (MQ=255)

                                       gTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTc                                                                                                           >  2:335857/1‑151 (MQ=255)

                                          gactttAACTTTTCATGCTTGATTAATATGGCTAATGTGCTTTTTATAATTTGGTTAGCCAGCGTGTGTTCATTAATCATATCTAAAGTACTGACGGTTTTCCCATAATTAAGATGAAAGCCGAGTATAGTTTTAGAAAACTCCATTc                                                                                                           >  2:665456/4‑148 (MQ=255)

                                           aaTTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGccc                                                                                                       >  1:434405/1‑151 (MQ=255)

                                             tttAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCtt                                                                                                     >  2:745193/1‑151 (MQ=255)

                                              ttAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCttt                                                                                                    >  2:767765/1‑151 (MQ=255)

                                              ttAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCtt                                                                                                     <  2:199543/150‑1 (MQ=255)

                                                 aCTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGAt                                                                                                 >  1:225905/1‑151 (MQ=255)

                                                 aCTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGAt                                                                                                 <  2:900916/151‑1 (MQ=255)

                                                    tttCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATg                                                                                                <  2:263403/149‑1 (MQ=255)

                                                    tttCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGcc                                                                                              >  1:83499/1‑151 (MQ=255)

                                                      tCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGcc                                                                                              >  1:610383/1‑149 (MQ=255)

                                                           cTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATg                                                                                       >  2:301538/1‑151 (MQ=255)

                                                           cTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATg                                                                                       >  2:137328/1‑151 (MQ=255)

                                                              aattaatATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGAt                                                                                     <  1:816895/150‑1 (MQ=255)

                                                                 taatATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGAtctc                                                                                  <  1:541561/150‑1 (MQ=255)

                                                                              gtgCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTg                                                                     <  1:444425/150‑1 (MQ=255)

                                                                              gtgCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGt                                                                    >  2:451136/1‑151 (MQ=255)

                                                                                gCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTa                                                                   >  2:46596/1‑150 (MQ=255)

                                                                                  tttttATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAAtc                                                                >  1:404737/1‑151 (MQ=255)

                                                                                     ttATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAAtca                                                               >  1:678044/1‑149 (MQ=255)

                                                                                       ataATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAAtcaagct                                                           <  1:259641/151‑1 (MQ=255)

                                                                                         aaTTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAAtcaagctc                                                          <  1:504273/150‑1 (MQ=255)

                                                                                            tCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAAtcaagctcaag                                                       <  1:523667/150‑1 (MQ=255)

                                                                                                  aGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCCTAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCgg                                                >  1:499065/1‑151 (MQ=255)

                                                                                                  aGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCgg                                                >  2:197284/1‑151 (MQ=255)

                                                                                                      aGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTg                                            >  2:316928/1‑151 (MQ=255)

                                                                                                         gtgtCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGaaa                                         <  1:818503/151‑1 (MQ=255)

                                                                                                           gtCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAg                                        <  2:572779/150‑1 (MQ=255)

                                                                                                               tCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCACGCTCAAGCCCTCGGCGTGAAAGCTGt                                    >  2:79606/1‑150 (MQ=255)

                                                                                                                cATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTa                                   <  2:603791/150‑1 (MQ=255)

                                                                                                                cATTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTa                                   >  2:181897/1‑150 (MQ=255)

                                                                                                                 aTTAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTaaa                                 <  1:569850/151‑1 (MQ=255)

                                                                                                                   tAAGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTaaaa                                <  2:96352/150‑1 (MQ=255)

                                                                                                                     aGCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAAccc                             >  2:615246/1‑151 (MQ=255)

                                                                                                                      gCATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAAcccc                            <  2:671991/151‑1 (MQ=255)

                                                                                                                       cATATCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCt                           <  2:320701/151‑1 (MQ=255)

                                                                                                                        atatCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCtt                          >  2:529477/1‑151 (MQ=255)

                                                                                                                        atatCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCtt                          <  1:403683/151‑1 (MQ=255)

                                                                                                                          atCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCttt                         <  2:152533/150‑1 (MQ=255)

                                                                                                                          atCAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCttt                         >  2:517797/1‑150 (MQ=255)

                                                                                                                            cAAAAGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCtttat                       <  1:504338/150‑1 (MQ=255)

                                                                                                                              aaaGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCtttattt                     >  2:840694/1‑150 (MQ=255)

                                                                                                                                aGTACTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAat                  <  2:286611/151‑1 (MQ=255)

                                                                                                                                   aCTGACGGTTTTCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAataca               <  1:880941/151‑1 (MQ=255)

                                                                                                                                   aCTGACGGTTTTCCCATAATTAAGATGGAAGCCGCCTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCCGTGTTAGGATTGTTATCAAGCTCAAGCCCTCGGCGTGATAGCTGTAAAACCCCTTTATTTAatac                <  2:507940/150‑1 (MQ=255)

                                                                                                                                         ggTTTTCCCATAATTAAGATGGAATCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAATACATAcccc         <  2:868498/151‑1 (MQ=255)

                                                                                                                                             ttCCCATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAATACATACCCCAgg      <  2:174660/150‑1 (MQ=255)

                                                                                                                                                 cATAATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTAGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAATACATACCCCAGGatat  >  2:711407/1‑150 (MQ=255)

GGTAATTTTCTATAAAGTGAACGAGCTTCATCTCTGATAGTTGAATTTAACTTTTCATGCTTAATTAATATGGCTAATGTGCTTTTTATAATTCGGTTAGCCAGCGTGTCTTCATTAAGCATATCAAAAGTACTGACGGTTTTCCCATGATTAAGATGGAAGCCGCGTATTGTTTTAGCAAACTCTATTCGCCCTTTGATGCCAGGAATGATCTCGGTGTTAGGATTGTAATCAAGCTCAAGCCCTCGGCGTGAAAGCTGTAAAACCCCTTTATTTAATACATACCCCAGGATAT  >  NC_000913/4577546‑4577840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A