Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I3 R1 9 69.6 2172233 98.7% 2143993 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,186,274 A→T N309Y (AAC→TAC)  rpoC → RNA polymerase, beta prime subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,186,2740AT100.0% 249.2 / NA 65N309Y (AAC→TAC) rpoCRNA polymerase, beta prime subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (23/42);  total (23/42)

TTTCGCGACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATAACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGACTACTCCGGTCGTTCTGTAATCACCGTAG  >  NC_000913/4186126‑4186421
                                                                                                                                                    |                                                                                                                                                   
tttCGCGACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTAc                                                                                                                                                   >  2:1010530/1‑151 (MQ=255)
  tCGCGACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACgg                                                                                                                                                 >  1:673726/1‑151 (MQ=255)
   cgcgACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACgg                                                                                                                                                 <  2:542236/150‑1 (MQ=255)
       aCTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGgtcgtc                                                                                                                                            <  1:994519/151‑1 (MQ=255)
       aCTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGgtcgtc                                                                                                                                            <  2:533682/151‑1 (MQ=255)
          tCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGtcgtcg                                                                                                                                           <  1:589551/149‑1 (MQ=255)
          tCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGtcgtcg                                                                                                                                           <  1:448906/149‑1 (MQ=255)
             gACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTc                                                                                                                                      <  1:613760/151‑1 (MQ=255)
              aCCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCg                                                                                                                                     >  2:1033094/1‑151 (MQ=255)
               ccTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGt                                                                                                                                    <  1:588097/151‑1 (MQ=255)
               ccTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGt                                                                                                                                    <  1:480822/151‑1 (MQ=255)
                  gAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGc                                                                                                                                  <  2:1055298/150‑1 (MQ=255)
                  gAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCg                                                                                                                                 >  2:536486/1‑151 (MQ=255)
                  gAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCg                                                                                                                                 >  1:167863/1‑151 (MQ=255)
                   aaCGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCg                                                                                                                                 >  1:745353/1‑150 (MQ=255)
                           gTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATc                                                                                                                              <  2:796570/145‑1 (MQ=255)
                             aTCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTc                                                                                                                      <  1:185738/151‑1 (MQ=255)
                               cgtcgCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCt                                                                                                                     <  2:790768/150‑1 (MQ=255)
                               cgtcgCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCt                                                                                                                     >  2:55403/1‑150 (MQ=255)
                                   gcgTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACaa                                                                                                                <  2:264719/151‑1 (MQ=255)
                                     gTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAg                                                                                                               >  2:1050855/1‑150 (MQ=255)
                                       cATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGt                                                                                                            <  1:946061/151‑1 (MQ=255)
                                        aTTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTc                                                                                                           <  1:467745/151‑1 (MQ=255)
                                           aaCCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCct                                                                                                         <  1:352112/150‑1 (MQ=255)
                                            aCCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCctct                                                                                                       <  1:911309/151‑1 (MQ=255)
                                               gTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGa                                                                                                     >  2:57553/1‑150 (MQ=255)
                                                 aacaacCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGaaa                                                                                                   <  2:281045/150‑1 (MQ=255)
                                                 aacaacCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAAt                                                                                                  >  2:536751/1‑151 (MQ=255)
                                                    aacCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCTGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACACCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGaaa                                                                                                   <  1:940666/147‑1 (MQ=255)
                                                      ccGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTg                                                                                             <  1:680860/151‑1 (MQ=255)
                                                      ccGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTg                                                                                             <  1:133749/151‑1 (MQ=255)
                                                            gAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCg                                                                                         <  1:10107/149‑1 (MQ=255)
                                                            gAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGAc                                                                                       <  1:312261/151‑1 (MQ=255)
                                                                 gTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGAt                                                                                  >  1:937408/1‑151 (MQ=255)
                                                                  tCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGAt                                                                                  <  1:982917/150‑1 (MQ=255)
                                                                     gctgGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCaa                                                                               <  2:86166/150‑1 (MQ=255)
                                                                      ctgGATTTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATc                                                                                 >  1:529480/1‑147 (MQ=255)
                                                                          aTCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTa                                                                          >  2:498957/1‑150 (MQ=255)
                                                                              ggCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTaaa                                                                        <  2:457884/148‑1 (MQ=255)
                                                                               gCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAgg                                                                    <  1:201831/151‑1 (MQ=255)
                                                                                cTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAggg                                                                   >  2:1056500/1‑151 (MQ=255)
                                                                                  gcgcCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAggg                                                                   <  1:57533/149‑1 (MQ=255)
                                                                                     ccGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGtt                                                              <  2:674487/151‑1 (MQ=255)
                                                                                      cGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGttt                                                             <  2:301365/151‑1 (MQ=255)
                                                                                      cGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGttt                                                             >  2:876902/1‑151 (MQ=255)
                                                                                         aCATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCg                                                          >  2:828768/1‑151 (MQ=255)
                                                                                           atcatcGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTc                                                        <  1:379905/151‑1 (MQ=255)
                                                                                              atcGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTc                                                        >  1:12809/1‑148 (MQ=255)
                                                                                                   acgtaACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCt                                                 <  1:536717/150‑1 (MQ=255)
                                                                                                   acgtaACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCt                                                 <  2:708786/150‑1 (MQ=255)
                                                                                                   acgtaACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAAAAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCt                                                 <  1:622071/150‑1 (MQ=255)
                                                                                                     gtaACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCt                                              <  1:55077/151‑1 (MQ=255)
                                                                                                       aaCGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCg                                            >  1:145733/1‑151 (MQ=255)
                                                                                                        aCGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCgg                                           <  2:843466/151‑1 (MQ=255)
                                                                                                        aCGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCgg                                           >  1:521405/1‑151 (MQ=255)
                                                                                                           aaaaaCGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTaa                                        <  1:917825/151‑1 (MQ=255)
                                                                                                             aaaCGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGc                                      >  2:1071542/1‑151 (MQ=255)
                                                                                                               aCGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCgt                                    <  1:1043564/151‑1 (MQ=255)
                                                                                                                cGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCgtg                                   <  2:632091/151‑1 (MQ=255)
                                                                                                                   aTGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGtt                                 <  2:589777/150‑1 (MQ=255)
                                                                                                                   aTGCTGCAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTg                                >  1:447233/1‑151 (MQ=255)
                                                                                                                     gctgcAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGac                              <  1:426085/151‑1 (MQ=255)
                                                                                                                       tgcAGGAAGCGGTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGact                             >  2:1005063/1‑150 (MQ=255)
                                                                                                                                 ggTAGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGACTACTCCGGTCGt                  <  1:570475/151‑1 (MQ=255)
                                                                                                                                    aGACGCCCTGCTGGATTACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGACTACTCCGGTCGTTCt               >  2:332773/1‑151 (MQ=255)
                                                                                                                                                  aaaaCGGTCGTCGCGGTCGTGCGATAACCGGTGCTAACAAGCGTCCTCTGAAGTCTTTGGCCGACATGATCAAAGGAAACAAGGGTCGTTTCCGTAAGAACCTGCGCGGTAAGCGTTGTGACTAGTCCGGTCGTTCTGTAAACACCGTAg  >  1:991489/3‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TTTCGCGACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCTGCTGGATAACGGTCGTCGCGGTCGTGCGATCACCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAACAGGGTCGTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGACTACTCCGGTCGTTCTGTAATCACCGTAG  >  NC_000913/4186126‑4186421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A