Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F50 I1 R1	10	71.6	2231174	98.9%	2206631	150.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,899,249	T→G	T49P (ACC→CCC)	yieK ←	putative 6‑phosphogluconolactonase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,899,249	0	T	G	100.0%	248.5 / NA	63	T49P (ACC→CCC)	yieK	putative 6‑phosphogluconolactonase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (31/32); total (31/32)

TTCTCTTCTTTGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCAT  >  NC_000913/3899104‑3899393

ttCTCTTCTTTGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGggggtg                                                                                                                                              >  1:642576/1‑150 (MQ=255)

   tcttctTTGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACC‑TTAAACAGGGGGGTgggg                                                                                                                                           >  1:252559/1‑149 (MQ=255)

    cttcttTGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAgg                                                                                                                                           <  1:405635/149‑1 (MQ=255)

    cttcttTGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGt                                                                                                                                          >  2:375650/1‑150 (MQ=255)

         ttGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTAtt                                                                                                                                       <  1:1017053/148‑1 (MQ=255)

           gATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATAc                                                                                                                                  <  1:865047/151‑1 (MQ=255)

              ccccGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATg                                                                                                                               <  2:1033630/151‑1 (MQ=255)

              ccccGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATg                                                                                                                               >  2:680295/1‑151 (MQ=255)

                 cGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCt                                                                                                                            >  2:31149/1‑151 (MQ=255)

                   cAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCttt                                                                                                                          >  1:1077808/1‑151 (MQ=255)

                   cAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCttt                                                                                                                          <  1:372684/151‑1 (MQ=255)

                    aGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTg                                                                                                                         >  2:1038373/1‑151 (MQ=255)

                        gTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCCGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCg                                                                                                                     <  1:915448/151‑1 (MQ=255)

                                cAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACcg                                                                                                             <  1:379842/151‑1 (MQ=255)

                                cAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACcg                                                                                                             <  1:798465/151‑1 (MQ=255)

                                 aGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACcgg                                                                                                            >  1:109993/1‑151 (MQ=255)

                                 aGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACcgg                                                                                                            >  1:69228/1‑151 (MQ=255)

                                    ttACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACcggcgg                                                                                                         >  1:881221/1‑151 (MQ=255)

                                      aCGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACcggcgg                                                                                                         >  2:600119/1‑149 (MQ=255)

                                      aCGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGt                                                                                                        >  2:468683/1‑150 (MQ=255)

                                      aCGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTa                                                                                                       <  2:868698/151‑1 (MQ=255)

                                         cAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAAtt                                                                                                    <  2:1017997/151‑1 (MQ=255)

                                                 tAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTTCCAGGtt                                                                                            >  2:226463/1‑151 (MQ=255)

                                                  aaTCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCTTACCAGGGCTTACCGTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGtt                                                                                            <  2:550489/150‑1 (MQ=255)

                                                     cGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAac                                                                                         <  2:815999/150‑1 (MQ=255)

                                                          cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACacgacg                                                                                   <  1:1054642/151‑1 (MQ=255)

                                                          cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACacgac                                                                                    <  2:276399/150‑1 (MQ=255)

                                                            ccTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGAcgcg                                                                                 <  1:679494/151‑1 (MQ=255)

                                                            ccTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAAAACGAcgc                                                                                  >  1:1045596/1‑150 (MQ=255)

                                                                ctcCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGAAATTGGCAGGATAACacgacgacgctt                                                                             >  1:618821/1‑145 (MQ=255)

                                                                  cccTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTc                                                                            <  1:117578/150‑1 (MQ=255)

                                                                  cccTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCg                                                                           >  1:391493/1‑151 (MQ=255)

                                                                   ccTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGa                                                                          <  1:123082/151‑1 (MQ=255)

                                                                         tGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGAGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGGAATTGCCAGGGTAACACGACGGGTCTTCGACata                                                                      >  1:778179/1‑149 (MQ=255)

                                                                          gCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACAtata                                                                    >  1:767099/1‑150 (MQ=255)

                                                                            cgcgAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAAcc                                                                 <  1:79607/151‑1 (MQ=255)

                                                                                   tGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCaa                                                               >  1:927816/1‑146 (MQ=255)

                                                                                   tGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAAATGCCAGGGTAACACGACGCGTCTTTGACATATAAACaa                                                               >  1:837718/1‑146 (MQ=255)

                                                                                     gAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACCCGTCTTCGACATATAAACAAGCa                                                            >  1:1009736/1‑147 (MQ=255)

                                                                                        tttCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCCGGGTAAAACGACGCGTCTTCGACATATAACCAAACAGATgg                                                       >  2:873008/1‑149 (MQ=255)

                                                                                          tcatcaAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGgtgt                                                    <  1:22442/150‑1 (MQ=255)

                                                                                          tcatcaAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGGAATTGCCAGGTTAAAACGACGCGTCTTAGACATATAAACAAGAAGATGgtgt                                                    >  1:151334/1‑150 (MQ=255)

                                                                                           catcaAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAAACAAGCAGATGGtgtg                                                   >  1:206726/1‑150 (MQ=255)

                                                                                              caAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCcgc                                               <  2:529101/151‑1 (MQ=255)

                                                                                               aaaaTTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGGTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGGGTGcc                                                 >  1:1061430/1‑148 (MQ=255)

                                                                                                aaaTTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCcgc                                               >  2:311691/1‑149 (MQ=255)

                                                                                                       aGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGc                                       <  2:444779/150‑1 (MQ=255)

                                                                                                          aaTAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCAt                                   <  1:285541/151‑1 (MQ=255)

                                                                                                             aGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTc                                <  1:421911/151‑1 (MQ=255)

                                                                                                               cAGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAAAACCACGCGTCTTCGACATATAACCAAGGAGATGGTGGGGCGCGACACGGCCCATTTTCt                              >  2:813053/1‑151 (MQ=255)

                                                                                                                aGTTATCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTg                             <  1:154316/151‑1 (MQ=255)

                                                                                                                    aTCGTACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTaa                         <  2:873157/151‑1 (MQ=255)

                                                                                                                        tACCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCtt                     >  1:424311/1‑151 (MQ=255)

                                                                                                                         aCCAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTc                    <  2:90897/151‑1 (MQ=255)

                                                                                                                          ccAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCg                   <  1:645067/151‑1 (MQ=255)

                                                                                                                          ccAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCAACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCg                   <  2:336561/151‑1 (MQ=255)

                                                                                                                          ccAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAAGTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGAGGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTc                    <  2:1025598/150‑1 (MQ=255)

                                                                                                                           cAGGGCTTACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCgg                  >  1:637093/1‑151 (MQ=255)

                                                                                                                                  tACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATg             <  1:522683/149‑1 (MQ=255)

                                                                                                                                  tACCTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGa            <  1:623576/150‑1 (MQ=255)

                                                                                                                                     cTTTAACCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGGAATTGCCCGGCTAACACAACCCCTGTTCGACAAATAAACAAAGAGATGGGGTGCCGCGACACGGCTCAATTCCTGGGAAATTTCGGAAATGGTTa         >  1:128563/1‑150 (MQ=255)

                                                                                                                                         aaCCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTc    <  1:313551/151‑1 (MQ=255)

                                                                                                                                          aCCAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTTCTGGTAATCTTCGGTAATGATTAAttt     >  1:1005940/1‑149 (MQ=255)

                                                                                                                                           ccAGGGGGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGGTAAAACGACGCGGCTTCGACATATAAACAAACAGAAGGGGTGCCGCGACACGGCTCATTTCCTGGGAATCTTTGGGAATGATTAATTTTAt  >  2:394860/1‑151 (MQ=255)

TTCTCTTCTTTGATCCCCGCAGGGGTGAAAAACAGATTACGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCAT  >  NC_000913/3899104‑3899393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A