Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F50 I1 R1 13 61.7 1918205 99.2% 1902859 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,823,799 G→T R467L (CGC→CTC)  spoT → bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,823,7990GT100.0% 311.2 / NA 78R467L (CGC→CTC) spoTbifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (34/44);  total (34/44)

CATGCCTGCGTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCGCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCATGAA  >  NC_000913/3823654‑3823946
                                                                                                                                                 |                                                                                                                                                   
cATGCCTGCGTGGGCGCCCGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGcc                                                                                                                                                 <  1:904965/150‑1 (MQ=255)
  tGCCTGCGTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCaa                                                                                                                                               >  1:75352/1‑150 (MQ=255)
     cTGCGTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAAtt                                                                                                                                           >  2:543495/1‑151 (MQ=255)
       gCGTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTc                                                                                                                                          <  1:819643/150‑1 (MQ=255)
         gTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGt                                                                                                                                        >  1:884774/1‑150 (MQ=255)
         gTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTc                                                                                                                                       <  1:898895/151‑1 (MQ=255)
           gggCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTc                                                                                                                                       >  1:805253/1‑149 (MQ=255)
              cgcACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTg                                                                                                                                  >  2:97444/1‑151 (MQ=255)
              cgcACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAACGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCACTTg                                                                                                                                  >  1:358015/1‑151 (MQ=255)
               gcACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGc                                                                                                                                 <  2:23638/151‑1 (MQ=255)
                cACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGc                                                                                                                                 <  1:609749/150‑1 (MQ=255)
                cACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCt                                                                                                                                >  1:581091/1‑151 (MQ=255)
                  cgcgTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTg                                                                                                                               >  2:905043/1‑150 (MQ=255)
                     gTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGaaaa                                                                                                                           <  2:887589/151‑1 (MQ=255)
                       tGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGaaaaa                                                                                                                          <  1:17750/150‑1 (MQ=255)
                         aCCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCt                                                                                                                       <  1:860154/151‑1 (MQ=255)
                           cGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTc                                                                                                                      >  2:266982/1‑150 (MQ=255)
                            gCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCaa                                                                                                                    <  2:744205/151‑1 (MQ=255)
                            gCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCCTGGCTGAACTTTGCCGTTCGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCa                                                                                                                     >  1:752315/1‑150 (MQ=255)
                              cAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGc                                                                                                                  <  1:585059/151‑1 (MQ=255)
                               aGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCg                                                                                                                 >  2:255470/1‑151 (MQ=255)
                               aGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCg                                                                                                                 <  1:402207/151‑1 (MQ=255)
                                 ccTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGt                                                                                                                <  2:176436/150‑1 (MQ=255)
                                   ttACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGtga                                                                                                              >  1:369687/1‑150 (MQ=255)
                                    tACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGtgatg                                                                                                            >  1:504603/1‑151 (MQ=255)
                                      cccGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGtgatga                                                                                                           <  1:564200/150‑1 (MQ=255)
                                      cccGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTgatgat                                                                                                          >  2:611835/1‑151 (MQ=255)
                                        cGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTc                                                                                                        >  2:681706/1‑151 (MQ=255)
                                         gCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCt                                                                                                       <  1:307782/151‑1 (MQ=255)
                                         gCTGTCGCAGCCGCTTACCAGCCGCCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGCTAGCCCGCAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGCTGATTc                                                                                                        >  1:337749/1‑150 (MQ=255)
                                            gTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTg                                                                                                      <  1:312348/149‑1 (MQ=255)
                                            gTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTg                                                                                                      <  1:242088/149‑1 (MQ=255)
                                             tCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTa                                                                                                    >  1:614862/1‑150 (MQ=255)
                                              cGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTaa                                                                                                   <  2:732842/150‑1 (MQ=255)
                                              cGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCAATACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAACCCACAAGCGTGATGATTCTGTAAg                                                                                                  <  1:656081/151‑1 (MQ=255)
                                                    cGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTggg                                                                                            <  2:235660/151‑1 (MQ=255)
                                                    cGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTggg                                                                                            >  2:183255/1‑151 (MQ=255)
                                                         aCCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCcgtc                                                                                       <  2:362867/151‑1 (MQ=255)
                                                          ccAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCcgtcg                                                                                      <  2:48870/151‑1 (MQ=255)
                                                           cAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCcgtcgt                                                                                     <  2:435823/151‑1 (MQ=255)
                                                           cAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCcgtcgt                                                                                     <  2:223886/151‑1 (MQ=255)
                                                             gCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCt                                                                                   <  2:594038/151‑1 (MQ=255)
                                                                   aaaCCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCa                                                                              >  2:268960/1‑150 (MQ=255)
                                                                    aaCCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAAc                                                                            <  1:251168/151‑1 (MQ=255)
                                                                            aaaTCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGAGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCttt                                                                    <  2:127985/151‑1 (MQ=255)
                                                                              aTCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTgg                                                                  <  2:802673/151‑1 (MQ=255)
                                                                                  ttACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGggtgg                                                              >  1:243846/1‑151 (MQ=255)
                                                                                     ccGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAg                                                           <  1:816583/151‑1 (MQ=255)
                                                                                      cGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGc                                                          <  1:32081/151‑1 (MQ=255)
                                                                                         tCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGt                                                       >  1:182344/1‑151 (MQ=255)
                                                                                                gcTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCtga                                                <  2:863549/151‑1 (MQ=255)
                                                                                                   cGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCtgaa                                               <  2:953967/149‑1 (MQ=255)
                                                                                                      ccGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCtgaatgaa                                           >  2:275919/1‑150 (MQ=255)
                                                                                                      ccGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCtgaat                                              <  2:382982/147‑1 (MQ=255)
                                                                                                      ccGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCtgaat                                              >  1:382960/1‑147 (MQ=255)
                                                                                                        gAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATc                                        >  1:530689/1‑151 (MQ=255)
                                                                                                          aTGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATccc                                      >  1:440476/1‑151 (MQ=255)
                                                                                                             ccGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGc                                    >  1:224480/1‑150 (MQ=255)
                                                                                                              cGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAg                                  <  2:75356/151‑1 (MQ=255)
                                                                                                               gCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAgg                                 >  1:107221/1‑151 (MQ=255)
                                                                                                                    gCTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAat                            >  1:728172/1‑151 (MQ=255)
                                                                                                                     cTGAACTTTGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAat                            >  2:225567/1‑150 (MQ=255)
                                                                                                                        aaCTTTATCGTTAGGTCGAAAGCGATCGCCAAAATTCGTCAGTTGCTGAAAACCCTCAAGCGTGATGATTCTGTAAGCCTGGGGCGTCGTCTGCGCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATAtt                         <  1:532073/150‑1 (MQ=255)
                                                                                                                            ttGTCGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAgc                     <  2:729167/150‑1 (MQ=255)
                                                                                                                                cGTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAg                <  1:685635/151‑1 (MQ=255)
                                                                                                                                 gTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGc               >  2:255925/1‑151 (MQ=255)
                                                                                                                                 gTTAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGc               <  1:543462/151‑1 (MQ=255)
                                                                                                                                   tAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCt              <  2:261755/150‑1 (MQ=255)
                                                                                                                                   tAGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTg             >  2:785876/1‑151 (MQ=255)
                                                                                                                                    aGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTgg            <  1:163766/151‑1 (MQ=255)
                                                                                                                                    aGCTCGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTg             <  2:680880/150‑1 (MQ=255)
                                                                                                                                     gcccGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCAAGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGa           <  1:541157/148‑1 (MQ=255)
                                                                                                                                      atCGCAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAGTGAAATCCCGCAGGAACATATTCAGCGCGAGCTGGAt          >  1:92162/2‑151 (MQ=255)
                                                                                                                                        cGAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATc         <  2:337519/150‑1 (MQ=255)
                                                                                                                                        cGAAAGCGCTCGCCAAAATTCGTCAGTTGCTAAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATc         <  1:166857/150‑1 (MQ=255)
                                                                                                                                         gAAAGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGc       >  2:117908/1‑151 (MQ=255)
                                                                                                                                           aaGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCAt     >  2:90286/1‑151 (MQ=255)
                                                                                                                                            aGCGCTCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCATg    <  2:664818/151‑1 (MQ=255)
                                                                                                                                             gcgctcgcCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCATGa   <  2:846863/151‑1 (MQ=255)
                                                                                                                                             gcgctcgcCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCATGa   <  2:209070/151‑1 (MQ=255)
                                                                                                                                              cgctcgcCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCATGaa  <  2:64461/151‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
CATGCCTGCGTGGGCGCACGCGTTGACCGCCAGCCTTACCCGCTGTCGCAGCCGCTTACCAGCGGTCAAACCGTTGAAATCATTACCGCTCCGGGCGCTCGCCCGAATGCCGCTTGGCTGAACTTTGTCGTTAGCTCGAAAGCGCGCGCCAAAATTCGTCAGTTGCTGAAAAACCTCAAGCGTGATGATTCTGTAAGCCTGGGCCGTCGTCTGCTCAACCATGCTTTGGGTGGTAGCCGTAAGCTGAATGAAATCCCGCAGGAAAATATTCAGCGCGAGCTGGATCGCATGAA  >  NC_000913/3823654‑3823946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A