Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I2 R1 173 150.8 4954114 96.5% 4780720 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 747,436 T→C T112A (ACC→GCC)  abrB ← regulator of aidB expression; inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913747,4360TC100.0% 529.0 / NA 139T112A (ACC→GCC) abrBregulator of aidB expression; inner membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (66/73);  total (66/73)

Only 100 of 139 total aligned reads displayed.

ATCATGCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGTATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGTTTTGCGCAATCATGC  >  NC_000913/747288‑747582
                                                                                                                                                    |                                                                                                                                                  
atcatGCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCAt                                                                                                                                                  >  4:875535/1‑151 (MQ=255)
  catGCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCAtt                                                                                                                                                 <  1:1895535/150‑1 (MQ=255)
   atGCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTc                                                                                                                                               >  4:64967/1‑151 (MQ=255)
     gCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTcc                                                                                                                                              <  1:740146/150‑1 (MQ=255)
     gCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTcc                                                                                                                                              <  4:372657/150‑1 (MQ=255)
     gCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTcc                                                                                                                                              >  1:1668791/1‑150 (MQ=255)
       gggTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAgg                                                                                                                                           <  4:1511681/151‑1 (MQ=255)
        ggTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGc                                                                                                                                          <  1:26363/151‑1 (MQ=255)
         gTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCa                                                                                                                                         <  1:529230/151‑1 (MQ=255)
           gACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCaa                                                                                                                                        <  4:975427/150‑1 (MQ=255)
           gACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCaa                                                                                                                                        <  2:381526/150‑1 (MQ=255)
           gACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAAt                                                                                                                                       <  4:1220909/151‑1 (MQ=255)
           aaCCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAAt                                                                                                                                       >  4:1368183/2‑151 (MQ=255)
             ccAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGa                                                                                                                                     <  1:1210673/151‑1 (MQ=255)
             ccAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGa                                                                                                                                     <  1:1770018/151‑1 (MQ=255)
               aGAACAGCGGCCCCCGCGACGAATAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGc                                                                                                                                   <  4:1659145/151‑1 (MQ=255)
                gAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCt                                                                                                                                  <  4:64517/151‑1 (MQ=255)
                  aCAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCtat                                                                                                                                <  4:1401460/151‑1 (MQ=255)
                   cAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCtata                                                                                                                               <  1:1532954/151‑1 (MQ=255)
                    aGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAg                                                                                                                              <  4:1774774/151‑1 (MQ=255)
                      cGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAgcg                                                                                                                            <  3:536615/151‑1 (MQ=255)
                         cccccGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCAc                                                                                                                         >  3:372737/1‑151 (MQ=255)
                          ccccGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCAcc                                                                                                                        <  4:1842633/151‑1 (MQ=255)
                           cccGCGACGAACAGCACTCGCAGATATTGCAGAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCACCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCa                                                                                                                       <  1:1430034/151‑1 (MQ=255)
                            ccGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCa                                                                                                                       >  1:514925/1‑150 (MQ=255)
                                gacgaACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATaac                                                                                                                  <  1:1345123/151‑1 (MQ=255)
                                gacgaACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATaac                                                                                                                  >  1:1911212/1‑151 (MQ=255)
                                     aCAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATaaccaacc                                                                                                             >  1:16910/1‑151 (MQ=255)
                                      cAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAAccc                                                                                                            >  1:639895/1‑151 (MQ=255)
                                       aGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAGccc                                                                                                            <  1:890036/150‑1 (MQ=255)
                                       aGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCca                                                                                                           <  1:1886396/151‑1 (MQ=255)
                                          aCTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCcaca                                                                                                         >  1:973583/1‑150 (MQ=255)
                                          aCTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCcaca                                                                                                         >  1:659246/1‑150 (MQ=255)
                                            tCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATg                                                                                                      >  1:1131058/1‑151 (MQ=255)
                                             cGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATgg                                                                                                     >  4:555170/1‑151 (MQ=255)
                                             cGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATgg                                                                                                     >  1:1213511/1‑151 (MQ=255)
                                             cGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATg                                                                                                      <  1:568046/150‑1 (MQ=255)
                                               cAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGgcg                                                                                                   >  4:1647443/1‑151 (MQ=255)
                                               cAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGgcg                                                                                                   <  2:441826/151‑1 (MQ=255)
                                                 gATATTGCATAAACGCCCCCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCt                                                                                                 <  1:1725296/151‑1 (MQ=255)
                                                 gATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCt                                                                                                 <  4:45416/151‑1 (MQ=255)
                                                      tGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGGTATAGCGCACCAATAACCAACCCACAATGGCGCTGGaa                                                                                             <  4:972327/150‑1 (MQ=255)
                                                       gCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGaaa                                                                                            <  1:803366/150‑1 (MQ=255)
                                                       gCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGaaa                                                                                            <  4:1358091/150‑1 (MQ=255)
                                                        cATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAagc                                                                                          <  4:1264795/151‑1 (MQ=255)
                                                          tAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAagc                                                                                          >  1:578818/1‑149 (MQ=255)
                                                           aaaCGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAagcag                                                                                        <  2:354203/150‑1 (MQ=255)
                                                             aCGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGt                                                                                     <  4:844261/151‑1 (MQ=255)
                                                              cGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGtt                                                                                    <  1:1161471/151‑1 (MQ=255)
                                                              cGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGtt                                                                                    <  3:312851/151‑1 (MQ=255)
                                                                ccaccaGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTAc                                                                                  >  3:258161/1‑151 (MQ=255)
                                                                 caccaGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTAcc                                                                                 <  1:357683/151‑1 (MQ=255)
                                                                 caccaGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTAcc                                                                                 >  4:1105803/1‑151 (MQ=255)
                                                                       gCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTaaa                                                                           <  1:749932/151‑1 (MQ=255)
                                                                        cGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTaaa                                                                           >  4:492201/1‑150 (MQ=255)
                                                                          aaTATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAAtt                                                                        >  4:1165334/1‑151 (MQ=255)
                                                                            tatCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGc                                                                      >  2:5215/1‑151 (MQ=255)
                                                                            tatCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGc                                                                      >  2:261539/1‑151 (MQ=255)
                                                                             atCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGc                                                                      >  4:480643/1‑150 (MQ=255)
                                                                                tGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAg                                                                   >  1:1296493/1‑150 (MQ=255)
                                                                                 gcgcCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCaa                                                                    <  1:1629284/148‑1 (MQ=255)
                                                                                 gcgcCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAg                                                                   <  4:1884272/149‑1 (MQ=255)
                                                                                    ccGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACg                                                               >  4:760217/1‑150 (MQ=255)
                                                                                    ccGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACg                                                               <  1:810920/150‑1 (MQ=255)
                                                                                     cGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGAt                                                             <  2:488278/151‑1 (MQ=255)
                                                                                      gTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATc                                                            >  1:1445254/1‑151 (MQ=255)
                                                                                      gTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATc                                                            >  1:847800/1‑151 (MQ=255)
                                                                                        aaTCTGGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCg                                                           <  4:577546/150‑1 (MQ=255)
                                                                                         aTCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGc                                                         >  4:1781862/1‑151 (MQ=255)
                                                                                              gcgcCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGtt                                                    <  1:1149104/151‑1 (MQ=255)
                                                                                              gcgcCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGtt                                                    <  1:1749887/151‑1 (MQ=255)
                                                                                              gcgcCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAATAAAATTGCAAGCACGATCGGCCAGtt                                                    >  3:221708/1‑151 (MQ=255)
                                                                                               cgcCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGtt                                                    >  4:728294/1‑150 (MQ=255)
                                                                                               cgcCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTg                                                   >  1:706967/1‑151 (MQ=255)
                                                                                                 ccATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGAc                                                 >  1:707279/1‑151 (MQ=255)
                                                                                                 ccATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGAc                                                 >  1:1623274/1‑151 (MQ=255)
                                                                                                       cGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAg                                           <  4:105199/151‑1 (MQ=255)
                                                                                                        gACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAgg                                          <  4:936455/151‑1 (MQ=255)
                                                                                                         aCCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAggg                                         <  2:437279/151‑1 (MQ=255)
                                                                                                           cATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGggtg                                       >  1:912527/1‑151 (MQ=255)
                                                                                                            aTTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGggtgg                                      <  4:762598/151‑1 (MQ=255)
                                                                                                               gccgccGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGgtggtg                                    >  4:527224/1‑150 (MQ=255)
                                                                                                                ccgccgCGCCGCCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTgag                                  <  4:1397114/151‑1 (MQ=255)
                                                                                                                   ccgcgccgcCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAAt                               <  1:831165/151‑1 (MQ=255)
                                                                                                                    cgcgccgcCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATc                              >  3:13805/1‑151 (MQ=255)
                                                                                                                     gcgccgcCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCg                             >  1:264334/1‑151 (MQ=255)
                                                                                                                     gcgccgcCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCg                             >  4:439835/1‑151 (MQ=255)
                                                                                                                     gcgccgcCAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCg                             <  4:1426964/151‑1 (MQ=255)
                                                                                                                            cAGGAGAGGAGCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAg                       >  4:242105/1‑150 (MQ=255)
                                                                                                                             aggagaggagCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTg                     >  1:718560/1‑151 (MQ=255)
                                                                                                                             aggagaggagCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTg                     <  4:1637500/151‑1 (MQ=255)
                                                                                                                              ggagaggagCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGa                    <  1:1275566/151‑1 (MQ=255)
                                                                                                                                 gaggagCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGt                 <  4:516663/151‑1 (MQ=255)
                                                                                                                                   ggggCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGttt               <  1:324803/148‑1 (MQ=255)
                                                                                                                                    gagCCCCAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGtttt              <  1:414824/151‑1 (MQ=255)
                                                                                                                                          cAGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCATCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCAAGATCGGCCAGTTGACGGCCAGGGTGGAGATAATCGAACCAGTCAGGTTTAGCGCa         >  3:128580/1‑150 (MQ=255)
                                                                                                                                           aGGCACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGTTTTGCGCAAt       >  2:74378/1‑151 (MQ=255)
                                                                                                                                              cACCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGTTTTGCGCAATCAt    <  4:1539604/151‑1 (MQ=255)
                                                                                                                                               aCCGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGTTTTGCGCAATCATg   >  4:1312299/1‑151 (MQ=255)
                                                                                                                                                ccGGCATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGTTTTGCGCAATCATGc  <  4:330518/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
ATCATGCGGGTGACCAGAACAGCGGCCCCCGCGACGAACAGCACTCGCAGATATTGCATAAACGCCACCAGGCGAATATCTGCGCCGTAATCTTGCGCCATAGCGACCATTGCCGCCGCGCCGCCAGGAGAGGAGCCCCAGGCACCGGTATTTCCAGGCAATGAGCTATAGCGCACCAATAACCAACCCACAATGGCGCTGGAAAGCAGCGTTACCAGTAAAATTGCAAGCACGATCGGCCAGTTGACGGCCAGGGTGGTGAGAATCGAACCAGTGAGGTTTTGCGCAATCATGC  >  NC_000913/747288‑747582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A