Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I1 R1 163 55.0 1534755 98.6% 1513268 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,568,898 A→G intergenic (‑75/+56) yddW ← / ← gadC liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,568,8980AG100.0% 212.2 / NA 58intergenic (‑75/+56)yddW/gadCliprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (24/34);  total (24/34)

AAAAGTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGA  >  NC_000913/1568753‑1569045
                                                                                                                                                 |                                                                                                                                                   
aaaaGTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGaa                                                                                                                                                 <  2:431165/150‑1 (MQ=255)
  aaGTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGaaaa                                                                                                                                               >  1:647175/1‑150 (MQ=255)
   aGTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGaaaa                                                                                                                                               >  1:596461/1‑149 (MQ=255)
   aGTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGaaaa                                                                                                                                               >  1:544859/1‑149 (MQ=255)
    gTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAgg                                                                                                                                            <  2:27946/151‑1 (MQ=255)
     tGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAggg                                                                                                                                           >  1:29482/1‑151 (MQ=255)
       ccAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAggg                                                                                                                                           >  1:767003/1‑149 (MQ=255)
          gTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCg                                                                                                                                       >  1:394386/1‑150 (MQ=255)
             cAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATg                                                                                                                                    >  1:35245/1‑150 (MQ=255)
               aCTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAAt                                                                                                                                 <  1:347314/151‑1 (MQ=255)
                 tAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAAtt                                                                                                                                >  2:648862/1‑150 (MQ=255)
                     aTCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGc                                                                                                                           <  1:43675/151‑1 (MQ=255)
                                   aaTCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTtata                                                                                                             <  2:457134/151‑1 (MQ=255)
                                   aaTCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTtat                                                                                                              <  1:522906/150‑1 (MQ=255)
                                    aTCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTtata                                                                                                             >  1:413835/1‑150 (MQ=255)
                                       gTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATaaac                                                                                                          >  1:334211/1‑148 (MQ=255)
                                          aaTTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTc                                                                                                      >  2:705466/1‑151 (MQ=255)
                                          aaTTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTc                                                                                                      >  1:298283/1‑151 (MQ=255)
                                             ttCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTc                                                                                                      >  2:587623/1‑148 (MQ=255)
                                                 tGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGAc                                                                                                  <  1:224764/148‑1 (MQ=255)
                                                 tGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACAt                                                                                                <  1:374131/150‑1 (MQ=255)
                                                 tGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACAt                                                                                                <  2:525509/150‑1 (MQ=255)
                                                   tttCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAATCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATgg                                                                                              >  1:116458/1‑150 (MQ=255)
                                                       gggAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAgt                                                                                         <  1:709820/151‑1 (MQ=255)
                                                       gggAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAgt                                                                                         <  1:277906/151‑1 (MQ=255)
                                                       gggAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAgt                                                                                         >  1:591798/1‑151 (MQ=255)
                                                       gggAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCGCCCTTGTCTTATAACCATTCAGACATGGTTAg                                                                                          <  2:476626/150‑1 (MQ=255)
                                                                   ccATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcat                                                                             <  2:339788/151‑1 (MQ=255)
                                                                     atatGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattc                                                                           <  2:451470/151‑1 (MQ=255)
                                                                      tatGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattc                                                                           >  2:319201/1‑150 (MQ=255)
                                                                      tatGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattc                                                                           >  2:760245/1‑150 (MQ=255)
                                                                              ggTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACaa                                                                    <  2:585856/149‑1 (MQ=255)
                                                                              ggTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAata                                                                  <  1:116316/151‑1 (MQ=255)
                                                                                 ttCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAatat                                                                 >  2:227390/1‑149 (MQ=255)
                                                                                  tCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAg                                                               <  1:480089/150‑1 (MQ=255)
                                                                                   ccGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAgt                                                              <  1:706528/150‑1 (MQ=255)
                                                                                   ccGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAgt                                                              <  1:717475/150‑1 (MQ=255)
                                                                                        aaaCAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTgtggtg                                                        <  2:637596/151‑1 (MQ=255)
                                                                                        aaaCAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTgtggt                                                         <  2:100102/150‑1 (MQ=255)
                                                                                         aaCAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTgtggtg                                                        >  1:658831/1‑150 (MQ=255)
                                                                                          aCAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGaa                                                      <  2:113585/151‑1 (MQ=255)
                                                                                          aCAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGaa                                                      <  1:160093/151‑1 (MQ=255)
                                                                                                gtgCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCa                                                <  1:140942/151‑1 (MQ=255)
                                                                                                  gcgcTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCAcg                                              <  2:405112/151‑1 (MQ=255)
                                                                                                  gcgcTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCAc                                               <  1:729767/150‑1 (MQ=255)
                                                                                                     cTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCgg                                           >  2:116629/1‑151 (MQ=255)
                                                                                                             cGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAg                                     <  2:238814/149‑1 (MQ=255)
                                                                                                                            tAAGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTg                    >  1:672527/1‑151 (MQ=255)
                                                                                                                              aGTCAATACGACCGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGCCCTTTTGGt                  <  2:212493/151‑1 (MQ=255)
                                                                                                                              aGTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGCAGAAGTGACCTTTTGGt                  >  2:633874/1‑151 (MQ=255)
                                                                                                                               gTCAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTg                 <  2:383943/151‑1 (MQ=255)
                                                                                                                                 cAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGc                <  2:625422/150‑1 (MQ=255)
                                                                                                                                 cAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCg               >  2:201588/1‑151 (MQ=255)
                                                                                                                                 cAATACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCg               <  2:23391/151‑1 (MQ=255)
                                                                                                                                   aTACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGtt             <  2:612956/151‑1 (MQ=255)
                                                                                                                                   aTACGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGtt             >  2:355028/1‑151 (MQ=255)
                                                                                                                                     aCGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCt           <  2:569929/151‑1 (MQ=255)
                                                                                                                                     aCGACAGCAAGCGCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCt           <  1:352038/151‑1 (MQ=255)
                                                                                                                                              agcgCGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGa  <  2:187909/151‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
AAAAGTGCCAGTGCAACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATTATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGA  >  NC_000913/1568753‑1569045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A