mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 24,819 | A→G | D810G (GAC→GGC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 34,120 | (T)9→8 | intergenic (+82/‑180) | carB → / → caiF | carbamoyl‑phosphate synthase large subunit/cai operon transcriptional activator |
| RA | 39,079 | C→T | A13T (GCC→ACC) | caiB ← | crotonobetainyl CoA:carnitine CoA transferase |
| RA | 49,990 | A→G | G56G (GGA→GGG) | folA → | dihydrofolate reductase |
| RA | 67,096 | T→C | K414K (AAA→AAG) | araA ← | L‑arabinose isomerase |
| RA | 92,775 | G→A | G455S (GGT→AGT) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 111,399 | A→G | N119S (AAT→AGT) | mutT → | dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 124,759 | A→G | A581A (GCA→GCG) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 158,903 | C→T | G75D (GGC→GAC) | pcnB ← | poly(A) polymerase |
| RA | 216,672 | A→G | V111A (GTC→GCC) | yaeF ← | putative lipoprotein |
| RA | 250,026 | A→G | pseudogene (45/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 276,808 | T→C | C32R (TGT→CGT) | mmuM → | CP4‑6 prophage; S‑methylmethionine:homocysteine methyltransferase |
| RA | 282,361 | C→T | G28G (GGC→GGT) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 304,787 | G→A | P140L (CCG→CTG) | ecpE ← | ECP production pilus chaperone |
| RA | 359,776 | T→A | R96R (CGT→CGA) | cynS → | cyanate aminohydrolase |
| RA | 384,316 | C→G | A101P (GCC→CCC) | yaiS ← | putative PIG‑L family deacetylase |
| RA | 393,298 | T→C | pseudogene (329/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 411,433 | A→G | L350P (CTG→CCG) | araJ ← | L‑arabinose‑inducible putative transporter, MFS family |
| RA | 415,168 | C→T | A196T (GCC→ACC) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 447,954 | A→G | I31I (ATT→ATC) | cyoD ← | cytochrome o ubiquinol oxidase subunit IV |
| RA | 471,711 | A→G | N359S (AAC→AGC) | mdlB → | putative multidrug ABC transporter ATPase |
| RA | 493,696 | G→A | L535L (CTG→CTA) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 496,700 | T→C | R527R (CGT→CGC) | htpG → | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 602,667 | G→A | D237N (GAT→AAT) | pheP → | phenylalanine transporter |
| RA | 613,368 | T→C | V211A (GTC→GCC) | fes → | enterobactin/ferrienterobactin esterase |
| RA | 624,671 | A→G | intergenic (‑161/‑214) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 648,555 | A→G | R339R (CGT→CGC) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 649,250 | C→T | V108I (GTA→ATA) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 649,679 | A→G | V271A (GTG→GCG) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 671,974 | G→A | D71D (GAC→GAT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 685,036 | T→C | K74E (AAG→GAG) | gltL ← | glutamate/aspartate ABC transporter ATPase |
| RA | 700,748 | T→C | K283E (AAG→GAG) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 702,903 | T→C | M237V (ATG→GTG) | nagB ← | glucosamine‑6‑phosphate deaminase |
| RA | 869,018 | G→A | G500E (GGG→GAG) | gsiA → | glutathione ABC transporter ATPase |
| RA | 914,373 | A→G | V162A (GTC→GCC) | ybjE ← | putative transporter |
| JC JC | 944,912 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | intergenic (+16/+14) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| RA | 953,431 | A→G | S42P (TCC→CCC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 1,022,355 | A→G | L510S (TTA→TCA) | yccS ← | putative transporter, FUSC superfamily inner membrane protein |
| RA | 1,091,158 | T→C | T378A (ACC→GCC) | pgaA ← | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein |
| RA | 1,097,218 | (G)7→8 | intergenic (+389/+347) | ycdU → / ← serX | putative inner membrane protein/tRNA‑Ser |
| RA | 1,109,893 | C→T | R187C (CGC→TGC) | opgG → | OPG biosynthetic periplasmic beta‑1,6 branching glycosyltransferase |
| RA | 1,122,826 | G→A | Q150* (CAA→TAA) | yceB ← | lipoprotein, DUF1439 family |
| RA | 1,124,108 | (G)6→7 | intergenic (‑54/+10) | grxB ← / ← mdtH | glutaredoxin 2 (Grx2)/multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| RA | 1,142,200 | C→T | R723H (CGT→CAT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,198,749 | A→G | I19V (ATT→GTT) | lit → | T4 phage exclusion protein; cell death peptidase, e14 prophage |
| RA | 1,236,437 | T→C | S269G (AGC→GGC) | ycgB ← | SpoVR family stationary phase protein |
| RA | 1,257,682 | A→G | V44A (GTA→GCA) | ychF ← | catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,279,364 | A→G | intergenic (+16/‑500) | narK → / → narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| RA | 1,297,861 | A→G | G87G (GGT→GGC) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| JC JC | 1,298,255 | IS5 (+) +4 bp | intergenic (‑134/‑340) | adhE ← / → ychE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase/UPF0056 family inner membrane protein |
| RA | 1,307,391 | T→C | T419A (ACA→GCA) | clsA ← | cardiolipin synthase 1 |
| RA | 1,356,140 | T→C | N324S (AAC→AGC) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| JC JC | 1,393,457 | IS186 (–) +5 bp | coding (231‑235/1614 nt) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,400,721 | A→G | F351F (TTT→TTC) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| RA | 1,405,951 | C→T | intergenic (+302/‑28) | abgR → / → smrA | putative DNA‑binding transcriptional regulator of abgABT operon/DNA endonuclease |
| RA | 1,429,684 | A→G | S212S (TCA→TCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,496,196 | A→G | R303R (CGA→CGG) | ydcJ → | putative metalloenzyme |
| RA | 1,514,041 | A→G | T71A (ACG→GCG) | ydcU → | putative ABC transporter permease |
| RA | 1,568,898 | A→G | intergenic (‑75/+56) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,636,093 | G→A | pseudogene (275/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,643,554 | C→T | E251K (GAA→AAA) | ydfU ← | Qin prophage; uncharacterized protein |
| RA | 1,686,077 | A→G | L171P (CTG→CCG) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,696,856 | T→C | D66G (GAC→GGC) | uidR ← | transcriptional repressor |
| RA | 1,729,436 | G→A | R117Q (CGG→CAG) | lhr → | putative ATP‑dependent helicase |
| RA | 1,756,709 | G→A | V338M (GTG→ATG) | pykF → | pyruvate kinase I |
| RA | 1,768,945 | A→G | intergenic (‑260/‑129) | ydiJ ← / → ydiK | putative FAD‑linked oxidoreductase/UPF0118 family inner membrane protein |
| RA | 1,787,381 | A→G | intergenic (‑269/‑64) | ppsA ← / → ppsR | phosphoenolpyruvate synthase/PEP synthase kinase and PEP synthase pyrophosphorylase |
| RA | 1,808,794 | T→C | H147R (CAC→CGC) | yniB ← | putative inner membrane protein |
| RA | 1,811,829 | T→C | V299A (GTG→GCG) | ydjN → | putative transporter |
| RA | 1,828,505 | G→A | P410P (CCC→CCT) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,907,238 | T→C | V66V (GTA→GTG) | cspC ← | stress protein, member of the CspA‑family |
| RA | 1,926,246 | A→G | I43V (ATT→GTT) | exoX → | exodeoxyribonuclease 10; DNA exonuclease X |
| RA | 1,931,374 | A→G | Q165R (CAG→CGG) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| RA | 1,951,184 | G→A | R118H (CGC→CAC) | yecD → | isochorismatase family protein |
| RA | 2,032,972 | C→T | T36T (ACG→ACA) | yedJ ← | putative HD superfamily phosphohydrolase |
| RA | 2,042,112 | T→C | intergenic (+87/‑256) | zinT → / → yodB | zinc and cadmium binding protein, periplasmic/cytochrome b561 homolog |
| RA | 2,105,749 | T→C | G103G (GGA→GGG) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
| RA | 2,150,746 | T→C | G80G (GGA→GGG) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,168,019 | G→A | V96V (GTC→GTT) | yegR ← | uncharacterized protein |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,178,383 | C→T | R61H (CGT→CAT) | fbaB ← | fructose‑bisphosphate aldolase class I |
| RA | 2,221,366 | T→C | K208K (AAA→AAG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,224,823 | A→G | A16A (GCT→GCC) | pbpG ← | D‑alanyl‑D‑alanine endopeptidase |
| RA | 2,232,230 | T→C | C129C (TGT→TGC) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,243,570 | A→G | V28A (GTG→GCG) | folE ← | GTP cyclohydrolase I |
| RA | 2,333,691 | A→G | pseudogene (712/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,346,802 | G→A | A646A (GCG→GCA) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| RA | 2,366,486 | G→A | A187T (GCT→ACT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,380,055 | T→C | T197A (ACT→GCT) | menF ← | isochorismate synthase 2 |
| RA | 2,386,502 | T→C | S215P (TCC→CCC) | yfbL → | putative M28A family peptidase |
| RA | 2,406,923 | T→C | intergenic (‑282/‑638) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,438,860 | A→G | D304G (GAC→GGC) | flk → | putative flagella assembly protein |
| RA | 2,448,157 | T→C | N95S (AAC→AGC) | prmB ← | N5‑glutamine methyltransferase |
| RA | 2,474,212 | A→G | T61A (ACT→GCT) | yfdQ → | CPS‑53 (KpLE1) prophage; uncharacterized protein |
| RA | 2,503,689 | A→G | I266T (ATT→ACT) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,555,942 | T→C | A153A (GCA→GCG) | eutL ← | putative ethanol utilization carboxysome structural protein |
| RA | 2,563,357 | A→G | intergenic (+240/‑235) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,704,016 | A→G | T16T (ACT→ACC) | rnc ← | RNase III |
| RA | 2,715,479 | G→A | T19T (ACG→ACA) | eamB → | cysteine and O‑acetylserine exporter |
| RA | 2,720,149 | T→C | L66S (TTG→TCG) | pka → | protein lysine acetyltransferase |
| RA | 2,809,774 | (T)7→6 | coding (158/738 nt) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,912,885 | A→G | I256T (ATC→ACC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,991,299 | A→T | N11I (AAT→ATT) | ygeG → | SycD‑like chaperone family TPR‑repeat‑containing protein |
| RA | 3,028,476 | T→C | G452G (GGT→GGC) | ghxQ → | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
| RA | 3,028,861 | G→A | A51V (GCG→GTG) | ygfS ← | putative 4Fe‑4S ferredoxin‑type oxidoreductase subunit |
| RA | 3,030,937 | T→C | intergenic (‑6/‑430) | ygfT ← / → uacT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit/uric acid permease |
| RA | 3,035,474 | T→A | I245F (ATC→TTC) | prfB ← | peptide chain release factor RF‑2 |
| RA | 3,062,799 | G→A | T650T (ACG→ACA) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,101,039 | (C)7→8 | coding (585/720 nt) | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,147,149 | A→G | pseudogene (124/417 nt) | yghX ← | pseudogene, dienlactone hydrolase family |
| RA | 3,157,770 | A→G | T41A (ACT→GCT) | yqhG → | DUF3828 family putative periplasmic protein |
| RA | 3,161,711 | A→G | V320A (GTG→GCG) | ftsP ← | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| RA | 3,166,544 | G→A | T392I (ACC→ATC) | ygiS ← | putative ABC transporter permease |
| RA | 3,280,131 | A→G | E406E (GAA→GAG) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| RA | 3,291,262 | T→C | F817L (TTT→CTT) | yraJ → | putative outer membrane protein |
| RA | 3,343,858 | T→C | V160A (GTA→GCA) | lptA → | lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein |
| RA | 3,372,102 | A→G | V158A (GTC→GCC) | nanT ← | sialic acid transporter |
| RA | 3,373,078 | T→C | T167A (ACC→GCC) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,376,927 | A→G | L165P (CTG→CCG) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| RA | 3,386,861 | A→G | L443P (CTG→CCG) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,390,865 | T→C | A388A (GCA→GCG) | tldD ← | putative peptidase |
| RA | 3,395,285 | T→C | D325G (GAC→GGC) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,423,401 | A→G | intergenic (+207/+22) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,431,635 | G→A | R110W (CGG→TGG) | yrdD ← | ssDNA‑binding protein, function unknown |
| RA | 3,505,488 | A→G | V178A (GTG→GCG) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,575,211 | T→C | A47A (GCT→GCC) | yhgN → | UPF0056 family inner membrane protein |
| RA | 3,591,608 | T→C | M240V (ATG→GTG) | ugpB ← | sn‑glycerol‑3‑phosphate ABC transporter periplasmic binding protein |
| RA | 3,592,873 | T→C | T189A (ACT→GCT) | livF ← | branched‑chain amino acid ABC transporter ATPase |
| RA | 3,614,870 | A→G | S402G (AGT→GGT) | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,619,262 | C→T | A24V (GCC→GTC) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,622,455 | T→C | S1088S (AGT→AGC) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,715,662 | T→C | T245A (ACC→GCC) | bisC ← | biotin sulfoxide reductase |
| RA | 3,811,334 | A→G | R28R (CGT→CGC) | rpmG ← | 50S ribosomal subunit protein L33 |
| RA | 3,815,808 | (A)8→7 | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,816,407 | G→A | pseudogene (143/669 nt) | rph ← | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,819,035 | T→C | Y54Y (TAT→TAC) | yicG → | UPF0126 family inner membrane protein |
| RA | 3,856,193 | G→A | L39F (CTT→TTT) | yidH ← | DUF202 family inner membrane protein |
| RA | 3,899,764 | C→T | G272S (GGC→AGC) | yieL ← | putative xylanase |
| RA | 3,929,378 | A→G | C76R (TGC→CGC) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,983,841 | A→G | Y295C (TAC→TGC) | aslB → | putative AslA‑specific sulfatase‑maturating enzyme |
| RA | 3,984,040 | C→T | A361A (GCC→GCT) | aslB → | putative AslA‑specific sulfatase‑maturating enzyme |
| RA | 4,040,701 | A→G | intergenic (+65/+205) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,128,197 | T→C | T67A (ACC→GCC) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,150,087 | A→G | V60A (GTA→GCA) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,223,586 | C→T | V15I (GTT→ATT) | iclR ← | transcriptional repressor |
| RA | 4,254,807 | C→T | D554N (GAT→AAT) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,270,398 | A→G | N54S (AAC→AGC) | yjbQ → | thiamine phosphate synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,334,684 | C→T | A303T (GCA→ACA) | eptA ← | lipid A phosphoethanolamine transferase |
| RA | 4,337,788 | A→G | S48P (TCC→CCC) | adiY ← | adi system transcriptional activator |
| RA | 4,390,985 | C→T | E175E (GAG→GAA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,399,151 | Δ1 bp | coding (1740/1848 nt) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,408,885 | (A)6→5 | coding (2232/2442 nt) | rnr → | exoribonuclease R, RNase R |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,431,878 | T→C | T36A (ACG→GCG) | ytfE ← | iron‑sulfur cluster repair protein RIC |
| RA | 4,440,765 | C→T | V151M (GTG→ATG) | ytfL ← | UPF0053 family inner membrane protein |
| RA | 4,503,797 | A→G | intergenic (‑366/‑261) | insG ← / → yjhB | IS4 transposase/putative MFS transporter, membrane protein |
| RA | 4,550,829 | C→T | L156L (CTG→CTA) | gntP ← | fructuronate transporter |
| RA | 4,571,430 | T→C | T49A (ACG→GCG) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| RA | 4,606,330 | (G)8→7 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| RA | 4,632,916 | A→G | T53A (ACT→GCT) | trpR → | transcriptional repressor, tryptophan‑binding |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 401045 | 401766 | 722 | 16 [15] | [14] 16 | iraP–[phoA] | iraP, [phoA] |
| * | * | ÷ | NC_000913 | 527360 | 527975 | 616 | 16 [15] | [15] 16 | [rhsD]–[rhsH] | [rhsD], ybbC, [rhsH] |
| * | * | ÷ | NC_000913 | 582484 | 584763 | 2280 | 17 [15] | [15] 16 | [ybcY]–[ompT] | [ybcY], ybcY, tfaX, appY, [ompT] |
| * | * | ÷ | NC_000913 | 618000 | 618495 | 496 | 16 [15] | [15] 16 | [entF]–[fepE] | [entF], [fepE] |
| * | * | ÷ | NC_000913 | 637283 | 637845 | 563 | 16 [15] | [15] 16 | [ybdO]–[dsbG] | [ybdO], [dsbG] |
| * | * | ÷ | NC_000913 | 707933 | 708309 | 377 | 16 [15] | [14] 16 | glnS/chiP | glutamyl‑tRNA synthetase/chitoporin, uptake of chitosugars |
| * | * | ÷ | NC_000913 | 900599 | 900743 | 145 | 16 [15] | [15] 16 | artJ/artM | arginine ABC transporter periplasmic binding protein/arginine ABC transporter permease |
| * | * | ÷ | NC_000913 | 1092368 | 1093270 | 903 | 16 [15] | [15] 16 | [ycdT] | [ycdT] |
| * | * | ÷ | NC_000913 | 1210496 | 1212862 | 2367 | 16 [15] | [15] 16 | [mcrA]–[ycgX] | [mcrA], icdC, iraM, [ycgX] |
| * | * | ÷ | NC_000913 | 1279443 | 1279724 | 282 | 16 [13] | [15] 17 | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| * | * | ÷ | NC_000913 | 1299258 | 1300988 | 1731 | 16 [15] | [15] 16 | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | * | ÷ | NC_000913 | 1432739–1433197 | 1433612–1433377 | 181–874 | 18 [15] | [15] 16 | [tfaR]–[pinR] | [tfaR], [pinR] |
| * | * | ÷ | NC_000913 | 1433685–1433970 | 1434500 | 531–816 | 16 [15] | [15] 16 | ynaE | ynaE |
| * | * | ÷ | NC_000913 | 1526802 | 1527726 | 925 | 16 [15] | [15] 16 | [yncG]–yncH | [yncG], yncH |
| * | * | ÷ | NC_000913 | 1529919 | 1531314 | 1396 | 16 [15] | [15] 16 | [rhsE]–[yncI] | [rhsE], ydcD, [yncI] |
| * | * | ÷ | NC_000913 | 1545838 | 1546325 | 488 | 16 [15] | [15] 17 | [yddL]–[yddG] | [yddL], [yddG] |
| * | * | ÷ | NC_000913 | 1634209–1634634 | 1634924–1634640 | 7–716 | 16 [14] | [15] 18 | [pinQ]–[stfQ] | [pinQ], tfaQ, [stfQ] |
| * | * | ÷ | NC_000913 | 1640343 | 1641269 | 927 | 16 [15] | [15] 16 | [ydfR]–essQ | [ydfR], essQ |
| * | * | ÷ | NC_000913 | 1754640 | 1755263 | 624 | 16 [14] | [15] 16 | ydhZ | ydhZ |
| * | * | ÷ | NC_000913 | 1812577 | 1813446 | 870 | 16 [15] | [15] 16 | [ydjO]–[cedA] | [ydjO], [cedA] |
| * | * | ÷ | NC_000913 | 1978231 | 1979712 | 1482 | 16 [15] | [15] 16 | insB1–insA | insB1, insA |
| * | * | ÷ | NC_000913 | 1986538 | 1986787 | 250 | 16 [15] | [15] 16 | araF/ftnB | L‑arabinose ABC transporter periplasmic binding protein/ferritin B, putative ferrous iron reservoir |
| * | * | ÷ | NC_000913 | 2033450 | 2034118 | 669 | 16 [15] | [15] 16 | [yedR]–[yedS] | [yedR], [yedS] |
| * | * | ÷ | NC_000913 | 2056641 | 2056923 | 283 | 16 [15] | [15] 16 | [yeeN] | [yeeN] |
| * | * | ÷ | NC_000913 | 2067950 | 2068685 | 736 | 16 [15] | [15] 17 | yoeH–[yoeA] | yoeH, [yoeA] |
| * | * | ÷ | NC_000913 | 2137482 | 2137832 | 351 | 16 [15] | [15] 16 | wza/yegH | colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein |
| * | * | ÷ | NC_000913 | 2192116 | 2192524 | 409 | 16 [14] | [15] 16 | [yehD]–[yehE] | [yehD], [yehE] |
| * | * | ÷ | NC_000913 | 2364335 | 2364600 | 266 | 16 [15] | [15] 16 | [nudI] | [nudI] |
| * | * | ÷ | NC_000913 | 2365570 | 2365912 | 343 | 16 [15] | [15] 17 | [ais] | [ais] |
| * | * | ÷ | NC_000913 | 2469106 | 2470694 | 1589 | 16 [15] | [15] 16 | [gtrB]–gtrS | [gtrB], gtrS |
| * | * | ÷ | NC_000913 | 2629505 | 2629962 | 458 | 16 [14] | [15] 16 | [yfgH] | [yfgH] |
| * | * | ÷ | NC_000913 | 2773329 | 2775379 | 2051 | 16 [15] | [15] 16 | [yfjW] | [yfjW] |
| * | * | ÷ | NC_000913 | 2783481 | 2785595 | 2115 | 17 [15] | [15] 17 | ypjC | ypjC |
| * | * | ÷ | NC_000913 | 2785642 | 2787079 | 1438 | 16 [15] | [15] 16 | ileY–[ygaQ] | ileY, [ygaQ] |
| * | * | ÷ | NC_000913 | 2903549 | 2903997 | 449 | 16 [15] | [15] 16 | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | * | ÷ | NC_000913 | 2989215 | 2990183 | 969 | 16 [15] | [15] 16 | [yqeI]–[yqeK] | [yqeI], yqeJ, yqeL, [yqeK] |
| * | * | ÷ | NC_000913 | 2994863 | 2996152 | 1290 | 16 [15] | [15] 16 | [ygeK]–[ygeO] | [ygeK], ygeN, ygeN, [ygeO] |
| * | * | ÷ | NC_000913 | 3171931 | 3172385 | 455 | 16 [15] | [15] 16 | [ygiZ] | [ygiZ] |
| * | * | ÷ | NC_000913 | 3360733 | 3361291 | 559 | 16 [13] | [15] 16 | [gltF] | [gltF] |
| * | * | ÷ | NC_000913 | 3423753–3424234 | 3424532–3424238 | 5–780 | 16 [15] | [14] 16 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| * | * | ÷ | NC_000913 | 3469718 | 3470155 | 438 | 16 [15] | [15] 16 | [chiA]–[tufA] | [chiA], [tufA] |
| * | * | ÷ | NC_000913 | 3581683 | 3583403 | 1721 | 16 [15] | [15] 16 | yhhZ–[yrhA] | yhhZ, [yrhA] |
| * | * | ÷ | NC_000913 | 3632443 | 3633286 | 844 | 16 [15] | [15] 16 | [yhiJ]–[yhiL] | [yhiJ], yhiL, [yhiL] |
| * | * | ÷ | NC_000913 | 3653254 | 3654013 | 760 | 16 [14] | [15] 16 | [yhiS]–[slp] | [yhiS], [slp] |
| * | * | ÷ | NC_000913 | 3721920 | 3722316 | 397 | 16 [15] | [14] 16 | [insK] | [insK] |
| * | * | ÷ | NC_000913 | 3751841 | 3752113 | 273 | 16 [15] | [15] 16 | [yiaT]–[yiaU] | [yiaT], [yiaU] |
| * | * | ÷ | NC_000913 | 3762322–3764071 | 3765176–3764078 | 8–2855 | 16 [15] | [15] 19 | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | * | ÷ | NC_000913 | 3768931 | 3770229 | 1299 | 17 [15] | [15] 16 | [yibW]–yibU | [yibW], yibW, yibV, yibV, yibU, yibU |
| * | * | ÷ | NC_000913 | 3796923 | 3803485 | 6563 | 16 [15] | [15] 16 | [waaC]–[waaB] | [waaC], waaL, waaU, waaZ, waaY, waaR, waaO, [waaB] |
| * | * | ÷ | NC_000913 | 3804072 | 3805363 | 1292 | 16 [15] | [15] 16 | [waaB]–[waaP] | [waaB], waaS, [waaP] |
| * | * | ÷ | NC_000913 | 3944160–3945567 | 3946120–3945569 | 3–1961 | 17 [15] | [15] 16 | rrlC | 23S ribosomal RNA of rrnC operon |
| * | * | ÷ | NC_000913 | 4002512 | 4003343 | 832 | 16 [14] | [15] 16 | [yigF]–[rarD] | [yigF], yigG, [rarD] |
| * | * | ÷ | NC_000913 | 4251210 | 4252049 | 840 | 16 [15] | [15] 16 | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| * | * | ÷ | NC_000913 | 4326816 | 4327165 | 350 | 16 [15] | [15] 16 | [crfC] | [crfC] |
| * | * | ÷ | NC_000913 | 4475859 | 4477214 | 1356 | 16 [15] | [15] 17 | yjgL | SopA‑central‑domain‑like hexapeptide repeat protein |
| * | * | ÷ | NC_000913 | 4556064 | 4556781 | 718 | 16 [14] | [15] 16 | [yjiC] | [yjiC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 6 (0.120) | 24 (0.550) | 23/266 | 1.2 | 77.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 9 (0.210) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 6 (0.120) | 22 (0.510) | 19/266 | 1.7 | 75.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 9 (0.210) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||