Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F50 I3 R1
|
105 |
107.9 |
3491495 |
95.1% |
3320411 |
150.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,405,949 |
G→A |
A231A (GCC→GCT) |
lrhA ← |
transcriptional repressor of flagellar, motility and chemotaxis genes |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,405,949 | 0 | G | A | 99.1%
| 416.7
/ NA
| 113 | A231A (GCC→GCT) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (59/53); minor base C (1/0); total (60/53) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 113 total aligned reads displayed.
CACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCGGCTCGCCTTT > NC_000913/2405805‑2406095
|
cACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCttt < 2:252172/150‑1 (MQ=255)
cACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAAACCAGCttt > 2:1237857/1‑150 (MQ=255)
aCCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGGAAACCATCTACTTCACTCAGCACACGCAGGTCCGGGCCCATCATCTCAACCGCCCTTGCCGTCACGCCAACACCAGCttt > 1:681977/1‑149 (MQ=255)
ccTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCa < 2:181545/150‑1 (MQ=255)
ccTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCAc < 2:501601/151‑1 (MQ=255)
gggCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTg < 3:79753/150‑1 (MQ=255)
ggCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGcc < 1:171219/151‑1 (MQ=255)
ccAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGc < 1:34708/151‑1 (MQ=255)
aGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCAc > 4:292618/1‑151 (MQ=255)
gCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACg > 1:99619/1‑151 (MQ=255)
cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAAc < 2:203686/151‑1 (MQ=255)
attattACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCCGGTCCGGGCTCATCATCTCAAACGGCCTTGCCGTCCCGCCAAAATCAGCTTTCACTGCCGCACGAAc > 1:816149/1‑150 (MQ=255)
attattACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAACCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAAc > 1:1155932/1‑150 (MQ=255)
attaCTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGc < 2:761836/150‑1 (MQ=255)
ttaCTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGcc > 1:937897/1‑150 (MQ=255)
taCTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTTACTGCCGCACCAACGGCCgg > 2:339791/1‑151 (MQ=255)
ggACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGc < 4:316496/151‑1 (MQ=255)
aCGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCg > 1:791107/1‑150 (MQ=255)
aCGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGt < 2:461762/151‑1 (MQ=255)
ggATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCCAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTc > 2:68184/1‑150 (MQ=255)
cATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGGCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGGAGCGTCGAgg > 3:118617/1‑150 (MQ=255)
aTAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGGCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCCAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAgg > 2:884977/1‑149 (MQ=255)
gCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAgg > 2:1001472/1‑146 (MQ=255)
gCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACa < 3:96022/151‑1 (MQ=255)
gCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAACCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGc > 1:263810/1‑147 (MQ=255)
cacaGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACa > 2:1090588/1‑150 (MQ=255)
acaGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGGCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACAt > 2:1031868/1‑150 (MQ=255)
caGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATaa < 3:232442/151‑1 (MQ=255)
aGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATa > 4:242878/1‑149 (MQ=255)
aGCAAATATTCGGTATCAGGTAGCGGCGGTAAACCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATa > 1:108652/1‑149 (MQ=255)
aaaTATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCCCTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATaa > 4:336173/1‑147 (MQ=255)
aaaTATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGcc > 2:965509/1‑150 (MQ=255)
aaaTATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGGCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGTGGCGACATAAGcc > 1:1021346/1‑150 (MQ=255)
aaTATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAg < 1:161921/151‑1 (MQ=255)
ttCGGTATCAGGTAGCGGCGGTAAGACATCTACTCCACTCAGCACACGCAGGTCCGTGCTCCTCATCTCAACCAGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGGCGAAACGACAAAAGCCAGt > 3:89456/1‑148 (MQ=255)
tCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGc < 1:617161/150‑1 (MQ=255)
cGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGcc > 4:189687/1‑150 (MQ=255)
cGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCa < 2:1203027/151‑1 (MQ=255)
cGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTAACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCa < 2:522943/151‑1 (MQ=255)
ggTATCAGGTAGCGGCGGTAAGCCCTCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGcc > 2:755174/1‑149 (MQ=255)
gTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCCTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACCAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCCTg > 2:837066/1‑151 (MQ=255)
aTCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATgg < 1:707484/150‑1 (MQ=255)
tCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGa > 3:54053/1‑150 (MQ=255)
cAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGaa < 2:930767/150‑1 (MQ=255)
ggTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAatat < 2:141689/151‑1 (MQ=255)
gTAGCGGCGGTAAGCCATCTACTCCACTCCGCACACCCAGGGCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCCAGACCCGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACCTAAGCCAGTCGCCACGGGatat > 3:125686/1‑150 (MQ=255)
tAGCGGCGGTAAGCCCTCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCCTGGAatat > 2:978461/1‑149 (MQ=255)
cggcggTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCt > 2:412929/1‑151 (MQ=255)
gcggTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCttt < 2:347232/151‑1 (MQ=255)
gcggTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCttt < 3:315592/151‑1 (MQ=255)
gTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTttatt > 1:879528/1‑151 (MQ=255)
gTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTttatt < 3:410308/151‑1 (MQ=255)
gCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGc < 4:4357/151‑1 (MQ=255)
ccATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCg > 2:308783/1‑151 (MQ=255)
aTCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGt > 2:360637/1‑150 (MQ=255)
aCTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCg < 2:60222/148‑1 (MQ=255)
cTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGcc > 1:826809/1‑149 (MQ=255)
cTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGcc > 1:958078/1‑149 (MQ=255)
cTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGcc > 1:147566/1‑149 (MQ=255)
tCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGc > 1:1127647/1‑151 (MQ=255)
ccACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAg < 2:970076/149‑1 (MQ=255)
ccACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGc < 1:1009262/150‑1 (MQ=255)
ccACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCa < 2:543380/151‑1 (MQ=255)
cAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCata < 2:1155722/151‑1 (MQ=255)
cacaCGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATcg < 2:653455/151‑1 (MQ=255)
cacaCGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATcg < 1:736886/151‑1 (MQ=255)
acacGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATcgc > 3:101881/1‑151 (MQ=255)
gCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGaaa < 2:945420/151‑1 (MQ=255)
aGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCCAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGACAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAAc > 1:918937/1‑150 (MQ=255)
ggTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACgg > 4:68058/1‑151 (MQ=255)
ccGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCt > 1:233545/1‑151 (MQ=255)
cGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTa < 1:1121562/151‑1 (MQ=255)
ggCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAgg > 2:772928/1‑151 (MQ=255)
tcatcaTCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGatc > 2:55193/1‑151 (MQ=255)
catcatCTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGatca < 1:1123423/151‑1 (MQ=255)
atcatcTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGatcat > 2:123046/1‑151 (MQ=255)
atcatcTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGatcat > 4:119949/1‑151 (MQ=255)
tcatcTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGatcatc > 1:120729/1‑151 (MQ=255)
atcTCAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAAGGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGATACGGGCTAGGatcatc > 1:866405/1‑149 (MQ=255)
ctcAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGc > 2:1076412/1‑151 (MQ=255)
tcAACCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGc > 1:1040717/1‑150 (MQ=255)
aaCCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCTCCATATCGCGAAACGGGCTAGGATCATCCAg < 1:1172339/147‑1 (MQ=255)
aaCCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAAt > 2:892167/1‑151 (MQ=255)
aCCGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATa < 3:292614/151‑1 (MQ=255)
ccGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATAc > 1:974057/1‑151 (MQ=255)
ccGGCCTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATAc < 1:411398/151‑1 (MQ=255)
cccTTGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGCGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAAt > 1:1265225/2‑146 (MQ=255)
ttGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAgg > 2:815098/1‑151 (MQ=255)
tGCCGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAagag < 2:525140/149‑1 (MQ=255)
ccGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGAt < 3:74861/151‑1 (MQ=255)
ccGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGAt < 1:35552/151‑1 (MQ=255)
cGTCACGCCAAGGCCAGCTTCCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTAGTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGAATCATCCAGCAATACAAGAGGGATc < 2:895141/151‑1 (MQ=255)
cGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATc > 3:214181/1‑151 (MQ=255)
cGTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATc < 3:15888/151‑1 (MQ=255)
gTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCg < 2:263774/151‑1 (MQ=255)
gTCACGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCg < 4:114838/151‑1 (MQ=255)
aCGCCAAGACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCGGc > 1:1089184/1‑150 (MQ=255)
aGACCAGCTTTCACGGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCGGCTCGCCtt < 2:681838/151‑1 (MQ=255)
gACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCGGCTCGCCttt < 1:1198718/151‑1 (MQ=255)
gACCAGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCGGCTCGCCttt > 1:1227196/1‑151 (MQ=255)
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CACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTCATCATCTCAACCGGCCTTGCCGTCACGCCAAGACCGGCTTTCACTGCCGCACGAACGGCCGGAAGCGTCGAGGCGACATAAGCCAGTCGCCATGGAATATCTGCTTTATTAAGCGTCGCCAGCACCATATCGCGAAACGGGCTAGGATCATCCAGCAATACAAGAGGGATCGGCTCGCCTTT > NC_000913/2405805‑2406095
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
