Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I3 R1 160 117.2 4331776 85.4% 3699336 149.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,306,946 (A)6→7 coding (205/330 nt) yciU ← UPF0263 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,306,9401.A100.0% 360.3 / NA 88A71S (GCC→TCC) yciUUPF0263 family protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (52/36);  total (52/36)

AGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGC‑AAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCG  >  NC_000913/1306793‑1307082
                                                                                                                                                    |                                                                                                                                              
aGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGC‑aa                                                                                                                                              >  4:1321173/1‑150 (MQ=255)
     tttttCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGC‑aaaaaa                                                                                                                                          >  4:1155644/1‑149 (MQ=255)
      ttttCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGC‑aaaaaaagt                                                                                                                                       >  4:693357/1‑148 (MQ=255)
      ttttCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGC‑aaaaaaag                                                                                                                                        >  4:160639/1‑148 (MQ=255)
         tCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCg                                                                                                                                     >  4:1397922/1‑151 (MQ=255)
             gCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGtt                                                                                                                                 >  2:568475/1‑151 (MQ=255)
             gCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGtt                                                                                                                                 >  2:1231835/1‑151 (MQ=255)
                 aaaGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCaaa                                                                                                                             <  2:707983/151‑1 (MQ=255)
                   aGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATc                                                                                                                           <  3:74569/151‑1 (MQ=255)
                    gCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCg                                                                                                                          <  2:1091762/151‑1 (MQ=255)
                     cGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCg                                                                                                                          >  4:466910/1‑150 (MQ=255)
                     cGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCg                                                                                                                          >  4:255037/1‑150 (MQ=255)
                     cGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGa                                                                                                                         <  2:1670029/151‑1 (MQ=255)
                       attattTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGaa                                                                                                                        >  2:1231726/1‑150 (MQ=255)
                          atttattCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATc                                                                                                                     <  4:1329228/150‑1 (MQ=255)
                                tCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATg                                                                                                               <  2:1289819/150‑1 (MQ=255)
                                 cccGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAGCATGtt                                                                                                             >  4:334052/1‑151 (MQ=255)
                                 cccGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGtt                                                                                                             >  2:1017254/1‑151 (MQ=255)
                                 cccGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGtt                                                                                                             >  4:279984/1‑151 (MQ=255)
                                   cGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTcc                                                                                                           <  4:1473457/151‑1 (MQ=255)
                                    gCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCt                                                                                                          >  4:220672/1‑151 (MQ=255)
                                      cAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGc                                                                                                        >  4:1248380/1‑151 (MQ=255)
                                      cAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGc                                                                                                        <  4:1363978/151‑1 (MQ=255)
                                         atgatATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGcc                                                                                                       >  1:115736/1‑149 (MQ=255)
                                         atgatATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAg                                                                                                     <  3:221378/151‑1 (MQ=255)
                                          tgatATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGt                                                                                                    >  4:1179298/1‑151 (MQ=255)
                                           gatATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTTTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTc                                                                                                   <  1:253977/151‑1 (MQ=255)
                                            atatGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCt                                                                                                  >  4:983572/1‑151 (MQ=255)
                                             tatGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCtt                                                                                                 >  4:1332707/1‑151 (MQ=255)
                                              atGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTc                                                                                                >  3:110050/1‑151 (MQ=255)
                                                ggCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTcc                                                                                               <  1:270852/150‑1 (MQ=255)
                                                  cAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTccgcc                                                                                            >  2:988318/1‑151 (MQ=255)
                                                         tgtgATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCg                                                                                      >  1:227488/1‑150 (MQ=255)
                                                          gtgATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGa                                                                                     >  4:338055/1‑150 (MQ=255)
                                                          gtgATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGa                                                                                     >  2:1236905/1‑150 (MQ=255)
                                                             aTCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATa                                                                                  >  4:1069363/1‑150 (MQ=255)
                                                                tttttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTc                                                                              >  1:249087/1‑151 (MQ=255)
                                                                 ttttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAAc                                                                                <  2:1125815/148‑1 (MQ=255)
                                                                 ttttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTcc                                                                             >  2:392099/1‑151 (MQ=255)
                                                                 ttttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTc                                                                              <  3:242300/150‑1 (MQ=255)
                                                                  tttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTcc                                                                             <  2:741866/150‑1 (MQ=255)
                                                                  tttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTcc                                                                             <  3:408795/150‑1 (MQ=255)
                                                                  tttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTcc                                                                             <  4:1680940/150‑1 (MQ=255)
                                                                  tttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCcg                                                                            >  2:438419/1‑151 (MQ=255)
                                                                   ttCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATTAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCcg                                                                            <  3:46062/150‑1 (MQ=255)
                                                                     cgcgGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCgcgc                                                                         >  2:229933/1‑151 (MQ=255)
                                                                      gcgGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgcc                                                                        >  2:126511/1‑151 (MQ=255)
                                                                         gCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgcc                                                                     >  4:26347/1‑151 (MQ=255)
                                                                          cATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgcc                                                                     >  2:463272/1‑150 (MQ=255)
                                                                           aTAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgccgc                                                                   >  4:1543643/1‑151 (MQ=255)
                                                                               cAGCATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGctc                                                               >  2:659496/1‑151 (MQ=255)
                                                                                aGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGctct                                                              <  2:157961/151‑1 (MQ=255)
                                                                                  aaTGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTc                                                            <  4:1484518/151‑1 (MQ=255)
                                                                                   aTGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTc                                                            >  4:693838/1‑150 (MQ=255)
                                                                                     tcGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTACGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaa                                                          >  2:1101182/2‑150 (MQ=255)
                                                                                     gCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaa                                                          >  4:124636/1‑150 (MQ=255)
                                                                                       gggCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACt                                                       >  4:683665/1‑151 (MQ=255)
                                                                                           aaaaaCATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGa                                                     >  3:436070/1‑149 (MQ=255)
                                                                                           aaaaaCATCGTTGATTTCACCATCTTCACTGCCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAg                                                   <  2:103092/151‑1 (MQ=255)
                                                                                             aaaCATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTACTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAAc                                                        >  1:218090/1‑144 (MQ=255)
                                                                                                cATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGa                                              <  3:219823/151‑1 (MQ=255)
                                                                                                 aTCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGaa                                             <  4:60816/151‑1 (MQ=255)
                                                                                                       gATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAAcagc                                         >  2:1081068/1‑149 (MQ=255)
                                                                                                        aTTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAAcagc                                         >  3:164921/1‑148 (MQ=255)
                                                                                                          ttCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGaa                                     <  2:1102935/150‑1 (MQ=255)
                                                                                                          ttCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAAc                                    >  4:579702/1‑151 (MQ=255)
                                                                                                            cACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGaaaa                                   <  4:742776/150‑3 (MQ=255)
                                                                                                            cACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACAt                                  >  1:217339/1‑151 (MQ=255)
                                                                                                            cACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACAt                                  <  1:392580/151‑1 (MQ=255)
                                                                                                            cACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACAt                                  >  2:628227/1‑151 (MQ=255)
                                                                                                               cATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAg                               <  2:668980/151‑1 (MQ=255)
                                                                                                                aTCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGc                              >  4:991073/1‑151 (MQ=255)
                                                                                                                 tCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCt                             >  3:466076/1‑151 (MQ=255)
                                                                                                                    tCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCt                             <  4:1209179/148‑1 (MQ=255)
                                                                                                                    tCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCt                             <  3:108902/148‑1 (MQ=255)
                                                                                                                    tCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTgg                           >  1:430724/1‑150 (MQ=255)
                                                                                                                        tGTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCg                       >  2:448309/1‑150 (MQ=255)
                                                                                                                         gTCCGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCg                       >  4:1352025/1‑149 (MQ=255)
                                                                                                                           ccGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGAt                   <  3:323010/151‑1 (MQ=255)
                                                                                                                            cGCCAGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGAtt                  <  3:265616/151‑1 (MQ=255)
                                                                                                                              ccAGATCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGt                >  1:435561/1‑151 (MQ=255)
                                                                                                                                aGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCg              <  2:430180/151‑1 (MQ=255)
                                                                                                                                aGACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCg              <  4:963240/151‑1 (MQ=255)
                                                                                                                                 gACCAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCgg             <  4:311460/151‑1 (MQ=255)
                                                                                                                                    cAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGc            >  4:1018369/1‑149 (MQ=255)
                                                                                                                                    cAATCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGc            >  3:355900/1‑149 (MQ=255)
                                                                                                                                       tCACCACTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGcc        >  2:1492057/1‑150 (MQ=255)
                                                                                                                                        caccacTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCa       <  1:412965/150‑1 (MQ=255)
                                                                                                                                        caccacTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAg      <  2:815729/151‑1 (MQ=255)
                                                                                                                                             cTTCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCg  <  2:160368/150‑1 (MQ=255)
                                                                                                                                               tCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCg  >  4:1018390/1‑148 (MQ=255)
                                                                                                                                               tCGGCAAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCg  >  3:358617/1‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                              
AGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGC‑AAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCG  >  NC_000913/1306793‑1307082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A