mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 25,559 | A→G | H118R (CAC→CGC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
| RA | 34,120 | (T)9→8 | intergenic (+82/‑180) | carB → / → caiF | carbamoyl‑phosphate synthase large subunit/cai operon transcriptional activator |
| RA | 54,593 | A→G | V37A (GTG→GCG) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
| RA | 57,698 | G→A | R112H (CGC→CAC) | djlA → | membrane‑anchored DnaK co‑chaperone, DNA‑binding protein |
| RA | 77,913 | C→T | A98V (GCA→GTA) | setA → | broad specificity sugar efflux system |
| RA | 92,324 | A→G | E304E (GAA→GAG) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 205,820 | G→A | R232H (CGT→CAT) | dnaE → | DNA polymerase III alpha subunit |
| RA | 230,758 | C→T | E42K (GAG→AAG) | yafC ← | LysR family putative transcriptional regulator |
| RA | 257,644 | A→G | D373G (GAC→GGC) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 311,012 | T→C | S109G (AGC→GGC) | ecpR ← | putative transcriptional regulator for the ecp operon |
| RA | 322,322 | C→T | R239C (CGC→TGC) | ykgE → | cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
| RA | 379,275 | A→G | R99R (CGT→CGC) | frmA ← | alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 396,507 | A→G | intergenic (‑220/‑132) | ampH ← / → sbmA | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase/peptide antibiotic transporter |
| RA | 428,067 | A→G | T141A (ACC→GCC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 455,102 | A→G | intergenic (+313/‑31) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 456,232 | T→C | V367A (GTG→GCG) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 489,636 | A→G | H1034R (CAC→CGC) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 511,225 | A→G | L52P (CTG→CCG) | copA ← | copper transporter |
| RA | 554,198 | A→G | R80R (CGT→CGC) | ppiB ← | peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
| RA | 562,993 | C→T | P220S (CCT→TCT) | sfmH → | FimA homolog, function unknown |
| RA | 592,031 | T→C | Y383C (TAT→TGT) | nfrB ← | bacteriophage N4 receptor, inner membrane subunit |
| RA | 667,766 | T→C | Y151C (TAC→TGC) | mrdA ← | penicillin‑binding protein 2, transpeptidase involved in peptidoglycan synthesis |
| RA | 699,271 | T→C | intergenic (‑94/+303) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 724,758 | T→C | E74E (GAA→GAG) | kdpC ← | potassium translocating ATPase, subunit C |
| RA | 756,306 | A→G | T134A (ACT→GCT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 759,716 | T→C | R337R (CGT→CGC) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 768,193 | T→C | R72R (CGT→CGC) | mngB → | alpha‑mannosidase |
| RA | 804,844 | C→T | R448C (CGC→TGC) | ybhJ → | aconitase family protein |
| RA | 808,658 | C→T | A200A (GCG→GCA) | bioA ← | 7,8‑diaminopelargonic acid synthase, PLP‑dependent |
| RA | 886,797 | T→C | A181A (GCA→GCG) | ybjJ ← | putative drug efflux MFS transporter, inner membrane protein |
| RA | 887,114 | T→C | T76A (ACA→GCA) | ybjJ ← | putative drug efflux MFS transporter, inner membrane protein |
| JC JC | 944,912 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | intergenic (+16/+14) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| RA | 976,248 | A→G | E209E (GAA→GAG) | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 981,315 | A→G | Y90C (TAT→TGT) | ldtD → | murein L,D‑transpeptidase |
| RA | 994,513 | A→G | V107A (GTG→GCG) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 1,007,093 | G→A | Q170* (CAA→TAA) | ycbX ← | 6‑N‑hydroxylaminopurine detoxification oxidoreductase |
| RA | 1,007,235 | C→T | W122* (TGG→TGA) | ycbX ← | 6‑N‑hydroxylaminopurine detoxification oxidoreductase |
| RA | 1,061,552 | G→A | R766Q (CGA→CAA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,071,745 | A→G | P7P (CCT→CCC) | rutD ← | putative reactive intermediate detoxifying aminoacrylate hydrolase |
| RA | 1,072,993 | A→G | V340A (GTG→GCG) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| RA | 1,109,596 | T→C | Y88H (TAC→CAC) | opgG → | OPG biosynthetic periplasmic beta‑1,6 branching glycosyltransferase |
| RA | 1,111,899 | A→G | D346G (GAT→GGT) | opgH → | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| RA | 1,147,646 | A→G | D9G (GAT→GGT) | plsX → | putative phosphate acyltransferase |
| RA | 1,163,318 | C→T | P20L (CCG→CTG) | thiK → | thiamine kinase |
| RA | 1,228,980 | C→T | R56C (CGC→TGC) | ycgN → | UPF0153 family cysteine cluster protein |
| RA | 1,233,845 | A→G | R291R (CGT→CGC) | nhaB ← | sodium:proton antiporter |
| RA | 1,260,214 | (A)6→5 | coding (590/1680 nt) | dauA ← | C4‑dicarboxylic acid transporter |
| RA | 1,306,946 | (A)6→7 | coding (205/330 nt) | yciU ← | UPF0263 family protein |
| RA | 1,307,362 | C→T | W428* (TGG→TGA) | clsA ← | cardiolipin synthase 1 |
| RA | 1,325,092 | T→C | V116A (GTG→GCG) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,370,044 | (T)9→8 | intergenic (+41/‑172) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 1,379,556 | T→C | L558P (CTG→CCG) | ycjT → | putative family 65 glycosyl hydrolase |
| RA | 1,399,186 | T→C | Q114R (CAG→CGG) | fnr ← | oxygen‑sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor |
| RA | 1,416,148 | A→G | H413H (CAT→CAC) | recE ← | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| RA | 1,419,242 | A→G | F24L (TTC→CTC) | ydaF ← | uncharacterized protein, Rac prophage |
| RA | 1,476,832 | T→C | Y563Y (TAT→TAC) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
| RA | 1,541,618 | C→T | D325N (GAC→AAC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,582,994 | T→C | K232E (AAG→GAG) | ydeO ← | UV‑inducible global regulator, EvgA‑, GadE‑dependent |
| RA | 1,585,827 | A→G | G220G (GGT→GGC) | ydeP ← | putative oxidoreductase |
| RA | 1,594,132 | (C)8→9 | pseudogene (3856/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,618,206 | A→G | E393E (GAA→GAG) | ydeA → | arabinose efflux transporter, arabinose‑inducible |
| RA | 1,684,983 | T→C | V242A (GTC→GCC) | tus → | inhibitor of replication at Ter, DNA‑binding protein |
| RA | 1,693,262 | G→A | G334G (GGC→GGT) | uidB ← | glucuronide transporter |
| RA | 1,698,899 | T→C | G94G (GGA→GGG) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,703,968 | A→G | L114P (CTG→CCG) | ydgJ ← | putative oxidoreductase |
| RA | 1,797,110 | G→A | R279W (CGG→TGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,816,806 | A→G | R110R (CGT→CGC) | chbG ← | chito‑oligosaccharide deacetylase |
| RA | 1,867,340 | A→T | N145Y (AAC→TAC) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,920,830 | T→C | V203A (GTG→GCG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,925,601 | A→G | R54R (CGA→CGG) | yobB → | C‑N hydrolase family protein |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,003,932 | A→G | S21G (AGC→GGC) | fliD → | flagellar filament capping protein |
| RA | 2,093,269 | A→G | Q291R (CAG→CGG) | hisC → | histidinol‑phosphate aminotransferase |
| RA | 2,150,798 | T→C | D63G (GAC→GGC) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,170,145 | T→C | pseudogene (23/475 nt) | gatR ← | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,206,043 | A→G | T117A (ACG→GCG) | yehM → | uncharacterized protein |
| RA | 2,213,613 | A→T | G344G (GGT→GGA) | yehU ← | inner membrane putative sensory kinase in two‑component system with YehT |
| RA | 2,315,572 | C→T | C695C (TGC→TGT) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,315,727 | G→A | G747D (GGC→GAC) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,371,563 | T→C | V219A (GTT→GCT) | arnT → | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| RA | 2,373,305 | T→C | E78E (GAA→GAG) | pmrD ← | inactive two‑component system connector protein |
| RA | 2,413,228 | T→C | intergenic (‑96/‑242) | yfbV ← / → ackA | UPF0208 family inner membrane protein/acetate kinase A and propionate kinase 2 |
| RA | 2,461,278 | A→G | intergenic (‑344/‑28) | yfcZ ← / → fadL | UPF0381 family protein/long‑chain fatty acid outer membrane transporter |
| RA | 2,479,993 | T→C | R264R (CGT→CGC) | dsdA → | D‑serine dehydratase |
| RA | 2,484,572 | A→G | T67A (ACG→GCG) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 2,490,592 | A→G | S453S (AGT→AGC) | oxc ← | oxalyl CoA decarboxylase, ThDP‑dependent |
| RA | 2,521,359 | (T)6→7 | intergenic (+31/+234) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,527,479 | G→A | G178G (GGG→GGA) | yfeH → | putative inorganic ion transporter |
| RA | 2,550,463 | T→C | D28G (GAC→GGC) | yfeX ← | porphyrinogen oxidase, cytoplasmic |
| RA | 2,596,461 | T→C | T93A (ACC→GCC) | ypfJ ← | putative neutral zinc metallopeptidase |
| RA | 2,621,017 | A→G | intergenic (‑145/‑180) | upp ← / → purM | uracil phosphoribosyltransferase/phosphoribosylaminoimidazole synthetase |
| RA | 2,700,875 | T→C | T42A (ACG→GCG) | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,711,683 | T→C | W422R (TGG→CGG) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,712,443 | A→G | W108R (TGG→CGG) | trmN ← | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| RA | 2,733,986 | T→C | D63G (GAT→GGT) | clpB ← | protein disaggregation chaperone |
| RA | 2,734,168 | A→G | R2R (CGT→CGC) | clpB ← | protein disaggregation chaperone |
| RA | 2,809,774 | (T)7→6 | coding (158/738 nt) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,821,424 | G→C | G196G (GGC→GGG) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,838,061 | G→A | C15C (TGC→TGT) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| RA | 2,896,700 | G→A | P391S (CCG→TCG) | ygcS ← | putative MFS sugar transporter; membrane protein |
| RA | 2,905,028 | T→C | T131A (ACC→GCC) | queE ← | 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 2,908,834 | T→C | Q278R (CAG→CGG) | pyrG ← | CTP synthetase |
| RA | 2,912,357 | T→C | H432R (CAC→CGC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,915,854 | T→C | R266R (CGT→CGC) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,947,095 | G→A | R28R (CGC→CGT) | mltA ← | membrane‑bound lytic murein transglycosylase A |
| RA | 3,044,702 | T→C | S347S (TCT→TCC) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,085,843 | C→T | Q23Q (CAG→CAA) | speA ← | biosynthetic arginine decarboxylase, PLP‑binding |
| RA | 3,089,713 | A→G | intergenic (+35/‑42) | galP → / → yggI | D‑galactose transporter/Zn‑dependent metalloprotease‑related protein |
| RA | 3,094,280 | C→T | V267V (GTG→GTA) | yggR ← | putative PilT family AAA+ ATPase |
| RA | 3,124,632 | A→G | S276S (AGT→AGC) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,179,085 | T→C | V324A (GTG→GCG) | tolC → | transport channel |
| RA | 3,197,294 | T→C | E783G (GAA→GGA) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,206,722 | T→C | F87S (TTC→TCC) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,214,171 | G→A | A375A (GCG→GCA) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,243,419 | T→C | E441E (GAA→GAG) | uxaC ← | uronate isomerase |
| RA | 3,297,157 | T→C | T328A (ACA→GCA) | yraQ ← | putative inner membrane permease |
| RA | 3,297,214 | T→C | S309G (AGT→GGT) | yraQ ← | putative inner membrane permease |
| RA | 3,332,634 | T→C | E34E (GAA→GAG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,340,559 | C→A | T95T (ACC→ACA) | yrbG → | putative calcium/sodium:proton antiporter |
| RA | 3,352,312 | G→A | R238R (CGC→CGT) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,377,215 | A→G | L69P (CTG→CCG) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| RA | 3,485,341 | A→G | E284E (GAA→GAG) | prkB → | putative phosphoribulokinase |
| RA | 3,523,544 | T→C | V225A (GTG→GCG) | mrcA → | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,545,025 | T→C | H48H (CAT→CAC) | gntX → | DNA catabolic protein |
| RA | 3,550,505 | T→C | T657A (ACG→GCG) | malP ← | maltodextrin phosphorylase |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,616,605 | G→A | A142T (GCC→ACC) | nikC → | nickel ABC transporter permease |
| RA | 3,627,512 | G→A | A676V (GCC→GTC) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,636,906 | C→T | A169T (GCG→ACG) | yhiN ← | putative oxidoreductase |
| RA | 3,641,005 | G→A | S48S (TCG→TCA) | dtpB → | dipeptide and tripeptide permease B |
| RA | 3,655,517 | A→G | V129A (GTG→GCG) | yhiD ← | putative Mg(2+) transport ATPase, inner membrane protein |
| RA | 3,676,463 | T→C | T630A (ACG→GCG) | yhjG ← | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,703,956 | A→G | V269A (GTG→GCG) | dppC ← | dipeptide/heme ABC transporter permease |
| RA | 3,714,446 | T→C | Q650R (CAG→CGG) | bisC ← | biotin sulfoxide reductase |
| RA | 3,724,462 | G→A | A286V (GCA→GTA) | glyQ ← | glycine tRNA synthetase, alpha subunit |
| RA | 3,727,916 | T→C | intergenic (‑168/+1) | yiaB ← / ← xylB | YiaAB family inner membrane protein/xylulokinase |
| RA | 3,728,118 | (C)8→7 | coding (1254/1455 nt) | xylB ← | xylulokinase |
| RA | 3,789,720 | T→C | N121S (AAC→AGC) | waaH ← | LPS(HepIII)‑glucuronic acid glycosyltransferase |
| RA | 3,815,808 | (A)8→7 | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,832,490 | T→C | H683R (CAC→CGC) | yicI ← | putative alpha‑glucosidase |
| RA | 3,885,467 | A→G | Y131C (TAT→TGT) | yidC → | membrane protein insertase |
| RA | 3,903,442 | G→A | A87V (GCG→GTG) | bglB ← | cryptic phospho‑beta‑glucosidase B |
| RA | 3,932,390 | C→T | H359Y (CAC→TAC) | kup → | potassium transporter |
| RA | 3,939,197 | T→C | L324P (CTG→CCG) | rbsR → | transcriptional repressor of ribose metabolism |
| RA | 3,987,439 | G→A | A148A (GCC→GCT) | hemY ← | putative protoheme IX synthesis protein |
| RA | 4,128,247 | C→T | R50H (CGT→CAT) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,181,472 | C→T | G76G (GGC→GGT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,200,185 | (A)7→6 | intergenic (+91/‑96) | yjaG → / → hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,360,430 | A→G | V502A (GTA→GCA) | cadC ← | cadBA operon transcriptional activator |
| RA | 4,364,174 | A→G | V290A (GTG→GCG) | dsbD ← | thiol:disulfide interchange protein and activator of DsbC |
| RA | 4,388,960 | C→T | S137S (TCG→TCA) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,399,151 | Δ1 bp | coding (1740/1848 nt) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,442,003 | A→G | R58R (CGT→CGC) | msrA ← | methionine sulfoxide reductase A |
| RA | 4,573,096 | A→G | pseudogene (683/1503 nt) | yjiT → | pseudogene |
| RA | 4,575,931 | A→G | pseudogene (2013/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
| RA | 4,582,590 | A→G | R153R (CGT→CGC) | hsdM ← | DNA methyltransferase M |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423726–3424234 | 3424572–3424238 | 5–847 | 71 [68] | [69] 70 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| * | * | ÷ | NC_000913 | 3943470–3943987 | 3945515–3944061 | 75–2046 | 70 [67] | [68] 72 | [gltU]–[rrlC] | [gltU], [rrlC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 15 (0.130) | 70 (0.660) | 59/266 | 1.8 | 82.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 17 (0.160) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 16 (0.130) | 95 (0.900) | 80/266 | 0.3 | 85.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 17 (0.160) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 91 (0.790) | 81/290 | 0.6 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||