Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I3 R1
|
160 |
117.2 |
4331776 |
85.4% |
3699336 |
149.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,003,932 |
A→G |
S21G (AGC→GGC) |
fliD → |
flagellar filament capping protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,003,932 | 0 | A | G | 99.1%
| 394.9
/ NA
| 105 | S21G (AGC→GGC) | fliD | flagellar filament capping protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (47/57); total (47/58) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 105 total aligned reads displayed.
AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATCTT > NC_000913/2003784‑2004078
|
aaaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGc < 4:132400/151‑1 (MQ=255)
aaaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGc > 2:925383/1‑151 (MQ=255)
aaaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGcc > 2:1492369/1‑151 (MQ=255)
aaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCt < 4:164231/151‑1 (MQ=255)
aaaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCt > 4:1462259/1‑151 (MQ=255)
aaaaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTc > 2:505165/1‑151 (MQ=255)
aaaCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCAc > 4:645273/1‑151 (MQ=255)
aCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCAccg > 4:910507/1‑151 (MQ=255)
aCAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCAccg > 4:1232450/1‑151 (MQ=255)
cAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCAccgc > 2:841127/1‑151 (MQ=255)
aaTTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCAccgcc < 1:1439/151‑1 (MQ=255)
aTTAAACGTAAACTTTGCGCAATTCAGTCCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCAccgccg < 4:1198757/151‑1 (MQ=255)
tAAACGTAAACTTTGCGAAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACcgccgc < 2:1389121/150‑1 (MQ=255)
aCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCaa < 2:28210/151‑1 (MQ=255)
aCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCa > 3:21085/1‑150 (MQ=255)
aCGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCa > 4:280153/1‑150 (MQ=255)
gTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCaaa > 3:343963/1‑150 (MQ=255)
gTAAACTTCGCGCAATTCAGAACGATATCTGCGGTATTCGTTTTACGTGGCGAAAGATAAAAGGAAATCGTATGGCAAGTATTTCTTCGCTGGGCTTCGGGTCAGGTCTGGATTTAAGCGCCATCCTTCATGGCCCCACCGCCGCGCaaaa < 1:41855/151‑1 (MQ=255)
aaaCTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCaaaaa < 4:551413/150‑1 (MQ=255)
aaCTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGc < 2:694941/151‑1 (MQ=255)
aCTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCg < 2:1600705/151‑1 (MQ=255)
tttGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGAc > 2:438585/1‑151 (MQ=255)
ttGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACg > 4:196562/1‑151 (MQ=255)
tGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACg < 2:576261/150‑1 (MQ=255)
gcgcAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGc < 4:282339/150‑1 (MQ=255)
gcAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTaa < 4:1285820/151‑1 (MQ=255)
cAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAAccccc > 4:114410/1‑150 (MQ=255)
cAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAAcccca < 2:626273/150‑2 (MQ=255)
gATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCa > 4:863325/1‑150 (MQ=255)
gATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCa > 4:303378/1‑150 (MQ=255)
aTAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCaaa < 2:864228/151‑1 (MQ=255)
tAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAAt > 2:74312/1‑151 (MQ=255)
aaCCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAAt < 4:205954/150‑1 (MQ=255)
aaCCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAAt < 2:1355596/150‑1 (MQ=255)
ccGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCa < 1:255567/151‑1 (MQ=255)
gttATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTTTTCTTTGGGAGAAGGGTCCGGCCCCCACTAAATTTCCATCCTTGCCAGCCTCTCTGCCCCGCAAAAAGCGTCGCTAAccc < 2:696888/131‑1 (MQ=255)
aTTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAAtcgt < 2:138485/151‑1 (MQ=255)
aTTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAAtcgt < 4:136933/151‑1 (MQ=255)
cGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATcgtcgt < 2:1396428/151‑1 (MQ=255)
gTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGtt > 2:330160/1‑151 (MQ=255)
tttACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGttt > 4:223461/1‑150 (MQ=255)
aCGTGTCGAAAGATAAAAGGAAAGCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTAcc < 2:794299/150‑1 (MQ=255)
tCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTaa > 3:413019/1‑150 (MQ=255)
tgAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAAc > 1:45242/2‑151 (MQ=255)
cGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTaaa < 4:192746/150‑1 (MQ=255)
cGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAAc < 3:113355/151‑1 (MQ=255)
aaGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACtt > 2:1170304/1‑150 (MQ=255)
aGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAg < 2:1551568/151‑1 (MQ=255)
gATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAgc > 4:1096200/1‑151 (MQ=255)
aTAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAgc < 2:1462700/150‑1 (MQ=255)
aaaaGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAgcgc < 2:712291/150‑1 (MQ=255)
gAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACgg < 3:312041/151‑1 (MQ=255)
aaaTCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGt < 4:1524596/151‑1 (MQ=255)
aTCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTAc > 4:92190/1‑151 (MQ=255)
cGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACg < 2:597538/150‑1 (MQ=255)
aTGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTg > 2:666605/1‑150 (MQ=255)
aTGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGa < 4:1054232/151‑1 (MQ=255)
ggCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGaa < 2:883755/150‑1 (MQ=255)
ggCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGaa < 4:1318079/150‑1 (MQ=255)
gCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGaaaa < 2:19845/151‑1 (MQ=255)
aaGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAgc > 4:1401794/1‑151 (MQ=255)
aaGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAgc > 3:307328/1‑151 (MQ=255)
aaGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAgc > 2:943705/1‑151 (MQ=255)
aGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAgcg < 2:398048/151‑1 (MQ=255)
tttCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCt > 1:56913/1‑151 (MQ=255)
tttCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCt > 4:124178/1‑151 (MQ=255)
tCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCt < 2:245761/149‑1 (MQ=255)
tCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTg > 2:1298254/1‑150 (MQ=255)
aTCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTgacg > 4:1064030/1‑151 (MQ=255)
tCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTgacg > 1:361843/1‑150 (MQ=255)
cGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTgacga < 2:685543/150‑1 (MQ=255)
cGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTgacga < 1:413002/150‑1 (MQ=255)
gCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACt > 2:1504561/1‑151 (MQ=255)
tggAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTc > 2:1545195/2‑151 (MQ=255)
gggAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACttt < 4:636460/150‑1 (MQ=255)
aGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTcc > 2:988800/1‑149 (MQ=255)
aGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAg < 4:39009/151‑1 (MQ=255)
gTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTcc > 2:1407566/1‑148 (MQ=255)
cGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGAcc > 1:426699/1‑151 (MQ=255)
cGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGAcc < 2:1460432/151‑1 (MQ=255)
gggTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCCCCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGAcc < 4:1506674/150‑1 (MQ=255)
gggTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCCCCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGAcc < 2:1534803/150‑1 (MQ=255)
ggTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGa > 1:199979/1‑123 (MQ=255)
ggTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGa < 3:199993/123‑1 (MQ=255)
gTCAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGcc > 4:1470739/1‑151 (MQ=255)
cAGGTCTGGATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCa < 4:1409326/150‑1 (MQ=255)
ggATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACt < 1:206872/148‑1 (MQ=255)
ggATTTAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGc < 2:644402/150‑1 (MQ=255)
aTTTAAGTCCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAACCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAt < 2:581691/150‑1 (MQ=255)
tttAAGTTCCATCCTTGATGGCCTCCCCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAt < 2:625083/149‑1 (MQ=255)
tttAAGTTCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCAtt < 4:818136/150‑1 (MQ=255)
ttCCATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTaa < 2:995500/150‑1 (MQ=255)
ccATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAACCTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAg < 2:400090/150‑1 (MQ=255)
cATCCTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGcc < 4:201402/151‑1 (MQ=255)
ccTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGa < 4:926574/150‑1 (MQ=255)
ccTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGAt > 4:459717/1‑151 (MQ=255)
cTTGATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATc > 4:1430183/1‑151 (MQ=255)
gATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAACCTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATCtt < 1:209859/150‑1 (MQ=255)
gATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATc < 2:1640608/148‑1 (MQ=255)
gATGGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATCtt < 4:849533/150‑1 (MQ=255)
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AAAAAAAACAATTAAACGTAAACTTTGCGCAATTCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCATGGCAAGTATTTCATCGCTGGGAGTCGGGTCAGGTCTGGATTTAAGTTCCATCCTTGATAGCCTCACCGCCGCGCAAAAAGCGACGCTAACCCCCATTTCAAATCAGCAATCGTCGTTTACCGCTAAACTTAGCGCCTACGGTACGCTGAAAAGCGCGCTGACGACTTTCCAGACCGCCAATACTGCATTGTCTAAAGCCGATCTT > NC_000913/2003784‑2004078
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
